mRNA_P-fluviatile_contig12.1580.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1580.1
Unique NamemRNA_P-fluviatile_contig12.1580.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Match: D7G8Z0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z0_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.740e-10
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = -3 
Query:  240 LWRGVGTMFAGCVPAHALYFSVLEDCKV*NGVGA-GKRTAHGFLPSLVP 383
            LWRGVGTMF GCVPAHALYFSVLE CKV +     G ++ +   PS  P
Sbjct:   83 LWRGVGTMFTGCVPAHALYFSVLEYCKVRSSTSRDGSKSVYEVHPSAEP 131
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BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Match: A0A6H5KLW9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.690e-9
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = -3 
Query:  288 LWRGVGTMFAGCVPAHALYFSVLEDCKV*NGV 383
            LWRGVGTMF GCVPAHALYFSVLE+CK   GV
Sbjct:   83 LWRGVGTMFTGCVPAHALYFSVLENCKDRLGV 114
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BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Match: A0A835Z185_9STRA (Mitoferrin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z185_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.120e-8
Identity = 25/35 (71.43%), Postives = 26/35 (74.29%), Query Frame = -3 
Query:  279 LWRGVGTMFAGCVPAHALYFSVLEDCKV*NGVGAG 383
            LWRGVGTMF GCVPAHA YFS+LE CK   G   G
Sbjct:   78 LWRGVGTMFVGCVPAHAAYFSILELCKERFGANGG 112
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BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Match: A0A835YZ17_9STRA (Mitoferrin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ17_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.160e-7
Identity = 26/35 (74.29%), Postives = 26/35 (74.29%), Query Frame = -3 
Query:  279 LWRGVGTMFAGCVPAHALYFSVLEDCKV*NGVGAG 383
            LWRGVGTMF GCVPAHA YFSVLE  K   G  AG
Sbjct:   78 LWRGVGTMFMGCVPAHAAYFSVLEASKSRFGANAG 112
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BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Match: A0A6U4JHL9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JHL9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.260e-6
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = -3 
Query:  303 LWRGVGTMFAGCVPAHALYFSVLEDCK 383
            LWRGVGTMF GCVPAHALYFS+ E  +
Sbjct:   94 LWRGVGTMFGGCVPAHALYFSIFEHLR 120
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BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Match: A0A7S2JA49_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JA49_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 2.940e-5
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = -3 
Query:  303 LWRGVGTMFAGCVPAHALYFSVLEDCK 383
            +WRGV TMF+GCVPAHA YFSV E  K
Sbjct:   90 MWRGVQTMFSGCVPAHAAYFSVYEGSK 116
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BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Match: A0A7S2PDH0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PDH0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 8.570e-5
Identity = 31/82 (37.80%), Postives = 37/82 (45.12%), Query Frame = -3 
Query:  180 LWRGVGTMFAGCVPAHALYFSVLEDCK-----------V*NGVGAGKRTA---HGFLPSLVPAVLSLAGKTGERLM*FVSGP 383
            LWRGV TMF GC+PAHALYFS  E  K           + N     K T+   H  + +L P     AG     L  F+  P
Sbjct:  275 LWRGVQTMFVGCIPAHALYFSSYESIKSICLDHNHSNHISNXXXXXKETSQQHHVGIDTLSPLQAMAAGGVATLLHDFIMTP 356
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G8Z0_ECTSI1.740e-1061.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLW9_9PHAE5.690e-984.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z185_9STRA9.120e-871.43Mitoferrin-like protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ17_9STRA3.160e-774.29Mitoferrin-like protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4JHL9_9STRA5.260e-677.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2JA49_9EUKA2.940e-574.07Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2PDH0_9STRA8.570e-537.80Hypothetical protein (Fragment) n=2 Tax=Skeletonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3181642..3182026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size386
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.7336757-CDS-P-fluviatile_contig12:3181641..31819711622815490.7336757-CDS-P-fluviatile_contig12:3181641..3181971Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3181642..3181971 +
1693562048.5778599-CDS-P-fluviatile_contig12:3181641..31819711693562048.5778599-CDS-P-fluviatile_contig12:3181641..3181971Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3181642..3181971 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.7442653-UTR-P-fluviatile_contig12:3181971..31820261622815490.7442653-UTR-P-fluviatile_contig12:3181971..3182026Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3181972..3182026 +
1693562048.5864055-UTR-P-fluviatile_contig12:3181971..31820261693562048.5864055-UTR-P-fluviatile_contig12:3181971..3182026Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3181972..3182026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1580.1prot_P-fluviatile_contig12.1580.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3181642..3181971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1580.1

>prot_P-fluviatile_contig12.1580.1 ID=prot_P-fluviatile_contig12.1580.1|Name=mRNA_P-fluviatile_contig12.1580.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
SREVCRFDHTHFHFVLECACPHFLKTVRRVRALEKIRARAARPRTPMRQC
FVFVVCCAPEGPETNYISLSPVLPARERTAGTREGRKPCAVLLPAPTPFH
TLQSSRTLK*
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mRNA from alignment at P-fluviatile_contig12:3181642..3182026+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1580.1 ID=mRNA_P-fluviatile_contig12.1580.1|Name=mRNA_P-fluviatile_contig12.1580.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=385bp|location=Sequence derived from alignment at P-fluviatile_contig12:3181642..3182026+ (Porterinema fluviatile SAG_2381)
TCGAGGGAAGTTTGTCGGTTTGACCACACACATTTTCACTTCGTGTTAGA
GTGTGCTTGTCCTCACTTTTTGAAAACAGTGCGGCGGGTTCGCGCTCTCG
AAAAAATAAGAGCCCGCGCAGCGCGCCCCCGCACACCGATGAGGCAATGC
TTCGTCTTCGTGGTGTGCTGTGCACCGGAGGGGCCAGAGACAAATTACAT
CAGCCTCTCTCCCGTTTTACCTGCAAGAGAAAGAACAGCAGGCACGAGAG
AGGGGAGAAAACCATGTGCAGTCCTCTTGCCTGCCCCGACCCCATTTCAT
ACCTTGCAGTCCTCCAGAACGCTGAAGTAGAGGGCGTGAGCCGGAACGCA
CCCCGCGAACATAGTGCCCACCCCGCGCCACAGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3181642..3182026+

>mRNA_P-fluviatile_contig12.1580.1 ID=mRNA_P-fluviatile_contig12.1580.1|Name=mRNA_P-fluviatile_contig12.1580.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig12:3181642..3182026+ (Porterinema fluviatile SAG_2381)
TCGAGGGAAGTTTGTCGGTTTGACCACACACATTTTCACTTCGTGTTAGA
GTGTGCTTGTCCTCACTTTTTGAAAACAGTGCGGCGGGTTCGCGCTCTCG
AAAAAATAAGAGCCCGCGCAGCGCGCCCCCGCACACCGATGAGGCAATGC
TTCGTCTTCGTGGTGTGCTGTGCACCGGAGGGGCCAGAGACAAATTACAT
CAGCCTCTCTCCCGTTTTACCTGCAAGAGAAAGAACAGCAGGCACGAGAG
AGGGGAGAAAACCATGTGCAGTCCTCTTGCCTGCCCCGACCCCATTTCAT
ACCTTGCAGTCCTCCAGAACGCTGAAGTAGTCGAGGGAAGTTTGTCGGTT
TGACCACACACATTTTCACTTCGTGTTAGAGTGTGCTTGTCCTCACTTTT
TGAAAACAGTGCGGCGGGTTCGCGCTCTCGAAAAAATAAGAGCCCGCGCA
GCGCGCCCCCGCACACCGATGAGGCAATGCTTCGTCTTCGTGGTGTGCTG
TGCACCGGAGGGGCCAGAGACAAATTACATCAGCCTCTCTCCCGTTTTAC
CTGCAAGAGAAAGAACAGCAGGCACGAGAGAGGGGAGAAAACCATGTGCA
GTCCTCTTGCCTGCCCCGACCCCATTTCATACCTTGCAGTCCTCCAGAAC
GCTGAAGTAG
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