mRNA_P-fluviatile_contig12.1572.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1572.1
Unique NamemRNA_P-fluviatile_contig12.1572.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3117103..3117685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.6468103-UTR-P-fluviatile_contig12:3117102..31171961622815490.6468103-UTR-P-fluviatile_contig12:3117102..3117196Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3117103..3117196 +
1693562048.3597376-UTR-P-fluviatile_contig12:3117102..31171961693562048.3597376-UTR-P-fluviatile_contig12:3117102..3117196Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3117103..3117196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.6603396-CDS-P-fluviatile_contig12:3117196..31176851622815490.6603396-CDS-P-fluviatile_contig12:3117196..3117685Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3117197..3117685 +
1693562048.3673449-CDS-P-fluviatile_contig12:3117196..31176851693562048.3673449-CDS-P-fluviatile_contig12:3117196..3117685Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3117197..3117685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1572.1prot_P-fluviatile_contig12.1572.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3117197..3117685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1572.1

>prot_P-fluviatile_contig12.1572.1 ID=prot_P-fluviatile_contig12.1572.1|Name=mRNA_P-fluviatile_contig12.1572.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=163bp
MESSPPAKRQQCYQGRGEGHKQRRKRTTKPNCPHDLKCEYATRERDKRKQ
NITRKANRSHRQHNPSSCLGGAANGGGRGKSKVTENSIHNTACHLVRFFS
LAFLPRRFPPPPSRPFGWRRISTTLLSARFLVCSSLSAIASPSSMCLAVM
NLSALCSTPECHG
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mRNA from alignment at P-fluviatile_contig12:3117103..3117685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1572.1 ID=mRNA_P-fluviatile_contig12.1572.1|Name=mRNA_P-fluviatile_contig12.1572.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=583bp|location=Sequence derived from alignment at P-fluviatile_contig12:3117103..3117685+ (Porterinema fluviatile SAG_2381)
CAAACGGGTTACACACCCCCTGATTGTATCTTGGTACCCTCGTAAATGCC
GGGATGTTCCGTGCCGGGTTGTCACCGGCCAGGCAAATATATAAATGGAG
TCCTCCCCACCGGCTAAAAGGCAACAATGCTATCAAGGAAGGGGAGAGGG
GCACAAGCAACGAAGAAAGCGGACAACAAAACCGAATTGTCCCCATGATC
TTAAATGCGAATATGCTACAAGGGAGAGAGACAAAAGAAAACAGAACATT
ACACGAAAAGCAAACAGATCACATAGACAGCACAACCCATCATCCTGCCT
GGGAGGTGCAGCAAACGGGGGGGGGCGAGGGAAAAGCAAAGTCACTGAAA
ATTCGATCCACAACACAGCGTGCCACCTGGTACGCTTCTTCTCGCTTGCT
TTCCTCCCTCGCCGTTTCCCTCCGCCCCCCTCCCGCCCCTTTGGCTGGCG
CCGTATCTCTACTACTCTTCTTTCTGCCCGTTTTCTCGTTTGTAGCTCGT
TGTCGGCTATAGCCTCCCCTTCGTCCATGTGCCTGGCGGTCATGAACCTT
TCAGCTCTCTGCAGTACCCCGGAGTGCCACGGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3117103..3117685+

>mRNA_P-fluviatile_contig12.1572.1 ID=mRNA_P-fluviatile_contig12.1572.1|Name=mRNA_P-fluviatile_contig12.1572.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=978bp|location=Sequence derived from alignment at P-fluviatile_contig12:3117103..3117685+ (Porterinema fluviatile SAG_2381)
ATGGAGTCCTCCCCACCGGCTAAAAGGCAACAATGCTATCAAGGAAGGGG
AGAGGGGCACAAGCAACGAAGAAAGCGGACAACAAAACCGAATTGTCCCC
ATGATCTTAAATGCGAATATGCTACAAGGGAGAGAGACAAAAGAAAACAG
AACATTACACGAAAAGCAAACAGATCACATAGACAGCACAACCCATCATC
CTGCCTGGGAGGTGCAGCAAACGGGGGGGGGCGAGGGAAAAGCAAAGTCA
CTGAAAATTCGATCCACAACACAGCGTGCCACCTGGTACGCTTCTTCTCG
CTTGCTTTCCTCCCTCGCCGTTTCCCTCCGCCCCCCTCCCGCCCCTTTGG
CTGGCGCCGTATCTCTACTACTCTTCTTTCTGCCCGTTTTCTCGTTTGTA
GCTCGTTGTCGGCTATAGCCTCCCCTTCGTCCATGTGCCTGGCGGTCATG
AACCTTTCAGCTCTCTGCAGTACCCCGGAGTGCCACGGTATGGAGTCCTC
CCCACCGGCTAAAAGGCAACAATGCTATCAAGGAAGGGGAGAGGGGCACA
AGCAACGAAGAAAGCGGACAACAAAACCGAATTGTCCCCATGATCTTAAA
TGCGAATATGCTACAAGGGAGAGAGACAAAAGAAAACAGAACATTACACG
AAAAGCAAACAGATCACATAGACAGCACAACCCATCATCCTGCCTGGGAG
GTGCAGCAAACGGGGGGGGGCGAGGGAAAAGCAAAGTCACTGAAAATTCG
ATCCACAACACAGCGTGCCACCTGGTACGCTTCTTCTCGCTTGCTTTCCT
CCCTCGCCGTTTCCCTCCGCCCCCCTCCCGCCCCTTTGGCTGGCGCCGTA
TCTCTACTACTCTTCTTTCTGCCCGTTTTCTCGTTTGTAGCTCGTTGTCG
GCTATAGCCTCCCCTTCGTCCATGTGCCTGGCGGTCATGAACCTTTCAGC
TCTCTGCAGTACCCCGGAGTGCCACGGT
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