mRNA_P-fluviatile_contig12.1570.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1570.1
Unique NamemRNA_P-fluviatile_contig12.1570.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3109719..3110171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1570.1prot_P-fluviatile_contig12.1570.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3109805..3110140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.54154-UTR-P-fluviatile_contig12:3109718..31098041622815490.54154-UTR-P-fluviatile_contig12:3109718..3109804Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3109719..3109804 +
1693562048.3209162-UTR-P-fluviatile_contig12:3109718..31098041693562048.3209162-UTR-P-fluviatile_contig12:3109718..3109804Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3109719..3109804 +
1622815490.566553-UTR-P-fluviatile_contig12:3110140..31101711622815490.566553-UTR-P-fluviatile_contig12:3110140..3110171Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3110141..3110171 +
1693562048.3415377-UTR-P-fluviatile_contig12:3110140..31101711693562048.3415377-UTR-P-fluviatile_contig12:3110140..3110171Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3110141..3110171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.55417-CDS-P-fluviatile_contig12:3109804..31101401622815490.55417-CDS-P-fluviatile_contig12:3109804..3110140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3109805..3110140 +
1693562048.3299308-CDS-P-fluviatile_contig12:3109804..31101401693562048.3299308-CDS-P-fluviatile_contig12:3109804..3110140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3109805..3110140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1570.1

>prot_P-fluviatile_contig12.1570.1 ID=prot_P-fluviatile_contig12.1570.1|Name=mRNA_P-fluviatile_contig12.1570.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
MINGQSPTIGRFRYFQGCAAQEIGLPSQLMSRRTAALAPFLRCPRAAFPR
QNAICAPRMRACHAQSLGAHAATVTHLSVRFCGACRLSSCAYAMISFDWV
CMLPRCTGSPS*
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mRNA from alignment at P-fluviatile_contig12:3109719..3110171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1570.1 ID=mRNA_P-fluviatile_contig12.1570.1|Name=mRNA_P-fluviatile_contig12.1570.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=453bp|location=Sequence derived from alignment at P-fluviatile_contig12:3109719..3110171+ (Porterinema fluviatile SAG_2381)
AAAATGTCTTCGTGTTGTAGATCCCGCGGGTGTTTGAAAAGCGGGCGTCG
TGTCGACCAACACAACGATCGAAGCTTGTGACCGGAATGATCAACGGTCA
ATCGCCGACGATTGGGCGTTTCCGTTATTTCCAAGGTTGCGCCGCCCAAG
AGATTGGCCTCCCCTCACAACTTATGTCAAGGAGAACTGCTGCTCTTGCG
CCTTTCTTGCGGTGCCCCCGTGCCGCCTTTCCCCGGCAAAATGCAATATG
TGCTCCTCGCATGCGCGCTTGCCATGCGCAGAGTCTTGGTGCACACGCCG
CGACAGTCACGCACCTATCTGTGCGCTTTTGTGGTGCGTGCCGGTTGTCC
TCATGTGCGTATGCGATGATTTCCTTTGACTGGGTTTGTATGCTTCCCAG
GTGCACTGGTTCTCCATCGTGAACTCGCTGCTGATCGTGTTGTTCCTCAC
GGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3109719..3110171+

>mRNA_P-fluviatile_contig12.1570.1 ID=mRNA_P-fluviatile_contig12.1570.1|Name=mRNA_P-fluviatile_contig12.1570.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=672bp|location=Sequence derived from alignment at P-fluviatile_contig12:3109719..3110171+ (Porterinema fluviatile SAG_2381)
ATGATCAACGGTCAATCGCCGACGATTGGGCGTTTCCGTTATTTCCAAGG
TTGCGCCGCCCAAGAGATTGGCCTCCCCTCACAACTTATGTCAAGGAGAA
CTGCTGCTCTTGCGCCTTTCTTGCGGTGCCCCCGTGCCGCCTTTCCCCGG
CAAAATGCAATATGTGCTCCTCGCATGCGCGCTTGCCATGCGCAGAGTCT
TGGTGCACACGCCGCGACAGTCACGCACCTATCTGTGCGCTTTTGTGGTG
CGTGCCGGTTGTCCTCATGTGCGTATGCGATGATTTCCTTTGACTGGGTT
TGTATGCTTCCCAGGTGCACTGGTTCTCCATCGTGAATGATCAACGGTCA
ATCGCCGACGATTGGGCGTTTCCGTTATTTCCAAGGTTGCGCCGCCCAAG
AGATTGGCCTCCCCTCACAACTTATGTCAAGGAGAACTGCTGCTCTTGCG
CCTTTCTTGCGGTGCCCCCGTGCCGCCTTTCCCCGGCAAAATGCAATATG
TGCTCCTCGCATGCGCGCTTGCCATGCGCAGAGTCTTGGTGCACACGCCG
CGACAGTCACGCACCTATCTGTGCGCTTTTGTGGTGCGTGCCGGTTGTCC
TCATGTGCGTATGCGATGATTTCCTTTGACTGGGTTTGTATGCTTCCCAG
GTGCACTGGTTCTCCATCGTGA
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