mRNA_P-fluviatile_contig12.1568.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1568.1
Unique NamemRNA_P-fluviatile_contig12.1568.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: D7G927_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G927_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 1.290e-126
Identity = 190/201 (94.53%), Postives = 196/201 (97.51%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQVSWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTVS 603
            MKVVSICT+RYNRDT EPVMLSQVN+LSS+GFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAF+LLTQ   LLEQYAEQVSWQSEIRHEAIRFPPM+KMIVDYQDPAKADKITKIQRDL+ETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCC VS
Sbjct:    1 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQ---LLEQYAEQVSWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 198
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A836CN50_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN50_9STRA)

HSP 1 Score: 292 bits (748), Expect = 1.540e-94
Identity = 144/200 (72.00%), Postives = 173/200 (86.50%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQVSWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTV 600
            MK+++I  +RY  DT E ++LSQ +DLSSFGFFQR GIKEMCTFFSKTIVKRT  GQRQ+VQHEDYNVHVY+R DGLA T+TAD+EYP RVAF+LL     +++Q++EQ+ WQ+E R EAI F PM++ IVDYQDPAKADKITKIQRDL++TT VLH+TI++VLERGV+LD+LVDRSD LSRQSKMFYKQA+KTNSCC V
Sbjct:    1 MKILAITMLRYGADTPEAIVLSQASDLSSFGFFQRAGIKEMCTFFSKTIVKRTPAGQRQTVQHEDYNVHVYVRHDGLAATITADMEYPMRVAFVLLMN---MMDQFSEQIQWQAETREEAIVFAPMQQAIVDYQDPAKADKITKIQRDLDDTTNVLHKTIESVLERGVKLDDLVDRSDSLSRQSKMFYKQAKKTNSCCVV 197
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A7S2V281_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V281_9STRA)

HSP 1 Score: 273 bits (698), Expect = 5.900e-87
Identity = 135/203 (66.50%), Postives = 170/203 (83.74%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHE--DYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQV-SWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTV 600
            MK++S+  +RY RDT EPVMLSQ  DLSS GFFQR G+KE+ TFF++ +VKRT PG RQ+VQH   DYNVHVY+R DGLAG VT+D+EYPPRVAF++LTQ   LL+Q+A  V  W++EIR EAI++PP+ + ++ YQDPA+ADK+TKIQRDL++TTE+LH+TIDNVLERG +LD LV+RSDDLSRQSK+FY QARK NSCC +
Sbjct:    1 MKLISVAILRYMRDTAEPVMLSQAADLSSIGFFQRNGVKELLTFFARMLVKRTSPGMRQTVQHNEFDYNVHVYVRADGLAGAVTSDMEYPPRVAFVMLTQ---LLDQFALDVRGWETEIRSEAIQWPPLGEALIRYQDPAEADKVTKIQRDLDQTTEILHKTIDNVLERGEKLDSLVERSDDLSRQSKLFYSQARKANSCCLI 200
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: W7TQ86_9STRA (Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ86_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.560e-86
Identity = 132/202 (65.35%), Postives = 170/202 (84.16%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQVS-WQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTVS 603
            MK+V+I   RY RDT EP++LS V +L SFG+FQR GI+EMC F SKT++KR QPGQRQ++QHE+YNVH ++R DGL GTV ADLEYPPRVAF+LL   S LLE++A  ++ W S  + E++ +PP+++ I +YQDPAKADKITKI+RDL+ETT++LH+TID VLERGV+LDELV+RS+DLS QSK+FYKQARKTNSCC++S
Sbjct:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLL---STLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A6T5MNT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MNT8_HETAK)

HSP 1 Score: 265 bits (676), Expect = 1.250e-83
Identity = 133/204 (65.20%), Postives = 165/204 (80.88%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHE--DYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQVS--WQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTV 600
            MK+VSI  +RY RD  EPVML+Q  DLSS GFFQR G++E+ TFFSK +VKRT+PG RQ+VQH   DYNVH Y+R DGL+GTVTAD+EYP RVAF+LLTQ   LL+QYA ++S  W+ E R+E I FPP ++ +V YQDPA ADK+TKIQRDL++TTE+L+ TIDNVL RG +LD LV+RSD+LSRQSKMFY QA++ NSCC +
Sbjct:    1 MKIVSIAILRYGRDVEEPVMLTQACDLSSLGFFQRSGVRELLTFFSKLMVKRTEPGTRQTVQHNEFDYNVHTYVRADGLSGTVTADMEYPARVAFLLLTQ---LLDQYATELSGVWERETRNEVIAFPPADQALVQYQDPAAADKVTKIQRDLDQTTEILYNTIDNVLARGEKLDNLVERSDELSRQSKMFYSQAKRANSCCLI 201
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A6U0IUG2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IUG2_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.470e-81
Identity = 131/203 (64.53%), Postives = 163/203 (80.30%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQV--SWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTVS 603
            MKVVSI  +R   D  EP+ +S   +LSS+GFFQRQG+KEM TFFSKT  KRT PGQRQS++HE Y VH Y+R DGLAGTVT DLEYP RVAF+LLTQ   LL+++ + V  SW+S    E++ FP +E+ +  YQDPA ADK+TKIQ+DL+ETT++LH+TID+VLERGV+LD LV+RS+DLS QSKMFYKQA+KTNSCCT+S
Sbjct:   16 MKVVSIAILRTGPDVAEPIPVSMACELSSYGFFQRQGVKEMLTFFSKTFTKRTDPGQRQSIEHESYVVHCYVRSDGLAGTVTTDLEYPARVAFVLLTQ---LLDEFQQTVGDSWRSVTTPESVTFPKIEEYLQKYQDPAAADKVTKIQQDLDETTQILHKTIDSVLERGVKLDSLVERSNDLSAQSKMFYKQAKKTNSCCTIS 215
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A6T5VLC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5VLC8_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.900e-79
Identity = 129/202 (63.86%), Postives = 162/202 (80.20%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQV--SWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTV 600
            MKVV +  +R      EP+ L+  NDLSSFG+FQRQG+ EM TFFSKT  KRTQPGQRQSV HE Y VH Y+R DGLAGTVT+DLEYP RVAF++LTQ   +L+ + +Q   SW+ E R E++ FP ME+ +  +Q+PA+ADK++KIQ+DL+ETTE+LH+TID+VLERGV+LD LV+RSDDLSRQSKMFYKQA+KTNSCC +
Sbjct:    1 MKVVGLSILRTGPSLDEPLPLAVANDLSSFGYFQRQGVSEMLTFFSKTFSKRTQPGQRQSVTHESYIVHCYVRGDGLAGTVTSDLEYPARVAFVMLTQ---MLDDFVQQFGDSWKRETRPESMTFPKMEEYLEKFQNPAEADKLSKIQKDLDETTEILHQTIDSVLERGVKLDALVERSDDLSRQSKMFYKQAKKTNSCCII 199
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A7R9W5E6_9STRA (Hypothetical protein n=4 Tax=Eupodiscales TaxID=33838 RepID=A0A7R9W5E6_9STRA)

HSP 1 Score: 253 bits (646), Expect = 9.650e-79
Identity = 127/203 (62.56%), Postives = 159/203 (78.33%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQV--SWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTVS 603
            +KVV I  +R   D  +P+ L    +LSSFGFFQRQG+KEM TFFSKT  KRTQPGQRQS+ HE Y VH Y+R DGLAG VT DLEYP RVAF+LLTQ   +L+++   V  SW++    E++ FPP+E  +  YQDPA ADK+TKIQ+DL+ETT++LH+TID+VLERG +LD+LV+RSDDLS+QSKMFYKQA+KTNSCC +S
Sbjct:   29 VKVVGISILRTGSDLPDPIPLCMACELSSFGFFQRQGVKEMLTFFSKTFTKRTQPGQRQSITHEQYVVHCYVRSDGLAGAVTTDLEYPARVAFVLLTQ---ILDEFTGAVGDSWKTVTTPESVSFPPIENYLQKYQDPATADKVTKIQKDLDETTQILHKTIDSVLERGSKLDDLVERSDDLSKQSKMFYKQAKKTNSCCVIS 228
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A7S2I938_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I938_9STRA)

HSP 1 Score: 253 bits (646), Expect = 2.670e-78
Identity = 127/203 (62.56%), Postives = 159/203 (78.33%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQV--SWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTVS 603
            MK+V +  +R  +D  EP+ L+   DLSS+G+FQRQG+KEM TFFSKT  KRT PGQRQS+ HE Y VH Y+R DGLAG VT+D EYP RVAF+LLTQ   LLE++ + V  SW++    E++ FPP+E  +  YQDPA ADK+TKIQ+DL+ETT VLH+TID+VLERG +LD LV++SDDLSRQSKMFYKQA+KTNSCC +S
Sbjct:   60 MKIVGLTILRTGKDVEEPIPLTTACDLSSYGYFQRQGVKEMLTFFSKTFTKRTAPGQRQSITHESYVVHCYVRSDGLAGVVTSDAEYPSRVAFVLLTQ---LLEEFLQTVGDSWKTVTAPESVAFPPIETYLQKYQDPAAADKVTKIQQDLDETTSVLHKTIDSVLERGEKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVIS 259
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BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Match: A0A7S2LY35_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY35_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.110e-77
Identity = 132/204 (64.71%), Postives = 159/204 (77.94%), Query Frame = 1 
Query:    1 MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQASCLLEQYAEQV--SWQS-EIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLNETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTVS 603
            MKVVSI  +R    + EP  ++   DLSS+GFFQRQG+KEM TFFSKT  KRT+PGQRQS+ HE Y VH Y+R DGLAG+VT D EYPPRVAF+LLTQ   LL+++      SW+S     E+  FPP+E+ IV YQDPA ADK+TKIQ DL ETT++LH+TID+VLERGV+LD LV++SDDLSRQSKMFYKQA+KTNSCC VS
Sbjct:   40 MKVVSITILR-TTPSAEPTPIAMACDLSSYGFFQRQGVKEMLTFFSKTFTKRTEPGQRQSISHESYVVHCYVRSDGLAGSVTTDAEYPPRVAFVLLTQ---LLDEFLSTNGDSWKSMPTLTESTVFPPLEEYIVKYQDPASADKVTKIQNDLEETTQILHKTIDSVLERGVKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVVS 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G927_ECTSI1.290e-12694.53Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A836CN50_9STRA1.540e-9472.00Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2V281_9STRA5.900e-8766.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TQ86_9STRA1.560e-8665.35Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae Ta... [more]
A0A6T5MNT8_HETAK1.250e-8365.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U0IUG2_9STRA2.470e-8164.53Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6T5VLC8_9STRA1.900e-7963.86Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7R9W5E6_9STRA9.650e-7962.56Hypothetical protein n=4 Tax=Eupodiscales TaxID=33... [more]
A0A7S2I938_9STRA2.670e-7862.56Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2LY35_9STRA3.110e-7764.71Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3093213..3097899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue6.1e-103
Seed eggNOG ortholog2880.D7G927
Preferred nameYKT6
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623,ko:K08516,ko:K18999
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04130,ko04138,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04130,map04138
KEGG ModuleM00001,M00003,M00165,M00167
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016409,GO:0016417,GO:0016482,GO:0016740,GO:0016746,GO:0016747,GO:0019706,GO:0019707,GO:0022406,GO:0030133,GO:0030425,GO:0030659,GO:0031090,GO:0031201,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0036477,GO:0042144,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097440,GO:0097441,GO:0097447,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0861@2759
EC3.1.3.16,4.1.2.13
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03021,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-15_002130.1
Exons6
Model size1366
Cds size606
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.89055-UTR-P-fluviatile_contig12:3093212..30939721622815527.89055-UTR-P-fluviatile_contig12:3093212..3093972Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3093213..3093972 -
1693562138.9826539-UTR-P-fluviatile_contig12:3093212..30939721693562138.9826539-UTR-P-fluviatile_contig12:3093212..3093972Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3093213..3093972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.9075286-CDS-P-fluviatile_contig12:3093972..30941101622815527.9075286-CDS-P-fluviatile_contig12:3093972..3094110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3093973..3094110 -
1693562138.9965916-CDS-P-fluviatile_contig12:3093972..30941101693562138.9965916-CDS-P-fluviatile_contig12:3093972..3094110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3093973..3094110 -
1622815527.9208624-CDS-P-fluviatile_contig12:3094555..30946211622815527.9208624-CDS-P-fluviatile_contig12:3094555..3094621Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3094556..3094621 -
1693562139.0054524-CDS-P-fluviatile_contig12:3094555..30946211693562139.0054524-CDS-P-fluviatile_contig12:3094555..3094621Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3094556..3094621 -
1622815527.9371228-CDS-P-fluviatile_contig12:3094940..30950391622815527.9371228-CDS-P-fluviatile_contig12:3094940..3095039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3094941..3095039 -
1693562139.0144277-CDS-P-fluviatile_contig12:3094940..30950391693562139.0144277-CDS-P-fluviatile_contig12:3094940..3095039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3094941..3095039 -
1622815527.948294-CDS-P-fluviatile_contig12:3095392..30955021622815527.948294-CDS-P-fluviatile_contig12:3095392..3095502Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3095393..3095502 -
1693562139.023434-CDS-P-fluviatile_contig12:3095392..30955021693562139.023434-CDS-P-fluviatile_contig12:3095392..3095502Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3095393..3095502 -
1622815527.9625902-CDS-P-fluviatile_contig12:3095854..30959371622815527.9625902-CDS-P-fluviatile_contig12:3095854..3095937Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3095855..3095937 -
1693562139.0322332-CDS-P-fluviatile_contig12:3095854..30959371693562139.0322332-CDS-P-fluviatile_contig12:3095854..3095937Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3095855..3095937 -
1622815527.9766338-CDS-P-fluviatile_contig12:3097789..30978991622815527.9766338-CDS-P-fluviatile_contig12:3097789..3097899Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3097790..3097899 -
1693562139.0409858-CDS-P-fluviatile_contig12:3097789..30978991693562139.0409858-CDS-P-fluviatile_contig12:3097789..3097899Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3097790..3097899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1568.1prot_P-fluviatile_contig12.1568.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3093973..3097899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1568.1

>prot_P-fluviatile_contig12.1568.1 ID=prot_P-fluviatile_contig12.1568.1|Name=mRNA_P-fluviatile_contig12.1568.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=202bp
MKVVSICTVRYNRDTTEPVMLSQVNDLSSFGFFQRQGIKEMCTFFSKTIV
KRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFMLLTQAS
CLLEQYAEQVSWQSEIRHEAIRFPPMEKMIVDYQDPAKADKITKIQRDLN
ETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCTV
S*
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mRNA from alignment at P-fluviatile_contig12:3093213..3097899-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1568.1 ID=mRNA_P-fluviatile_contig12.1568.1|Name=mRNA_P-fluviatile_contig12.1568.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4687bp|location=Sequence derived from alignment at P-fluviatile_contig12:3093213..3097899- (Porterinema fluviatile SAG_2381)
ATGAAGGTGGTGTCAATTTGCACTGTGCGTTACAACCGCGACACCACTGA
ACCTGTGATGTTGTCGCAAGTCAACGACCTTTCATCGTTTGGGTTCTTCC
AACGTCAAGGGTGAGTGCGACTTTCTCTTATTTGGCATATGTGTTGTACA
CGTGGGTGTACATGACCCGTTTTCCGTGCTGCCGAACACGTCAACCAACG
ACCCTCTCAGCTCTCACATACATCTGTGAAATTTCAAGTGATGTATTGAT
TTGCGTCAAGTTCACTTGTCGTTGGAAAGGGGTGGCAGTGAACTACGCCC
CCCCCTTGGAGAGAGCGACACTCCCCCAACAATGACCGCCATCTCTTCTC
GCTCGCTCTCTCGCCCACTTTCTCTCCTAGTTTCGTCACTCGCTCTCGCC
TTTGTGTCTGATTCCGGATCGGATGCAGTCTTCTCGGTCCTCAGTCTTAT
AGCAGAACAATAGAAGTTTGGTGTGACACCACACGATGTGCCAATTTGTG
TCGTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCCCTCTCTCCGTTTCGAAGGTGTTTTTGTACAGGAGTTGAAC
ATGAAAAGCCCTTGCGCGCCGAGTCCGCCATCGGGTCGAGAGTCGCGATT
TCGATTGCTGTTATATCGGTGCGTTGATTGACTGGACGAATGTGCAATGT
GTTGCTCAAGCTGTTGGTATTTATAGTGGGCACCAAAGTGACGAAAACCC
GTTGACCCCAATCAAGTAATGACACGGGGTTTGGACATGCCGATGTCAAG
ACTGAAAATCATTCCGCGTACAACGTTCAGAGCAGTTCCATGATGCGCGA
CCGCGTGTGGACCTCGACCAGTGAGGAGGTGCACTCAAGTGGTGGCACGC
TTTAAAGGATGTTTCTGGTACAGTTTTCCACACACGGAAATCGATTTTCT
GTACGCGGGACCTAGGCGTCAGTTGCCACAAGATGCGATCTGCCCAGCAG
GATCTTCCGCGACTGGAGACACAGCAGTCGTGCCGGTAACACTGCTGTTG
AGGTCAATCGCCGAAATAGCCAGCGGCACCACACTCCAACGTGTTGTATT
TGACGCTGTTGCTCCAACACGCTCCCTCAGCCTCAGTCGACGGGAACACG
AAGCTTACTCAAATGTCACCGCCGAGGAGGGTACCCTTTGTATCCGGTAA
AATTGTCATTCAACGAGTGAACAGGTTTGTGCCTTGATAGAGACCTCGTT
TTTTCATATGTTGCACACATTTGGATGACTTTGTTCTTGGATAGATGAAA
GTCTGACCATTAGGAACACTGTCGATATTAAGACGCCTTTTCAAAGCTCT
CGAAGGGAGAATCTCGACATTCGCTCAATGATTTGCCTCGGTGTGATTGG
CGGTGGCGGTGACTACGTAGAGTTTGGTATCTGTCCTCTGATGCGATGCT
GCCTGCAAGGCGGCACTCAAAACCATCATGCGGGATGCGGCTCCCGCGTT
CTCTGACGGTAAAGGTAGCTCGCATCAAGGAGCCAACCAGCCGGGCGGGA
AACACCTTTTTAATTGCTTTTCACCTAAAATGATCAATGCCGCGCTGAAG
ATTTGGAGCACACAAACCGGCCCCCGTAGCCTTACTTTTTCTGCCCCTGA
GCTGATCAGATCCTCTCACCCATCTCGATTTACTTTGACATTTTTTTCAT
CAGCGTCAACGGTTGCAACTTTCATGGCCCCTTGATGTTACTGGCTTGCT
GGAGTGAAGGCATCGGTAAGAATTGCCGGTGAACGTTGCCTTCCACCCTG
TCTCCATTTCATCTATTCACGTGTCACCTGCGCTCGGCAACGCCCCTCTG
CAACATGTGTTGCATCGACGATTTCTATACGCCCACCCTCTTCGCTTGTC
ACTATTTTTCAGAATCAAGGAGATGTGCACCTTCTTCAGCAAGACCATCG
TCAAGCGCACCCAACCCGGACAGCGGCAAAGCGTCCAGCACGAGGGTGAG
ACACCGGATCAGAAGTTTGTCGGCAACAGTATGTTGCCGTCTCGAAAGCG
CCGGTACGCGAGCCCTTCTGCCTCCTACTGCCTCGAACGACCGGGAGAAA
CAATCTTTGTGTTCCCACCCTCTCTGGCGGCCGTCTTGCTAGCTAACGTA
CGTGCACGTGAATCGTCGATACTGCAACTTCTCGGTCAGCTTGCCCGCTT
TCGCTTCTATGGGACGGCCGTTCAGCTCTGGTCGGCGAGCTCTTTGATGA
CTCCGCTGCCCCTCTTGCGGCGTGCTGCGTTGCCCTTCCTATGGTGTTGT
GATGCGTTTGGTGTGCGACGTCAACCTTTTCCTACCGCGCCTCGAAGACT
ACAACGTGCACGTATACATGCGGCAAGACGGCTTAGCGGGGACGGTGACT
GCGGATCTGGAATACCCACCACGAGTGGCGTTCATGTTGCTCACACAGGC
GAGCTGCGTTGGATGAAGTCGATATCGGATGTTTCGTGTCAGTTGTTGCC
AGAACTGAGCTTGAAATCACTCCTCGAAGAAGCAAGAATAACGTGTGTTG
GAGAGGGTAAGAGTGAGTTTTCTGGGCTCAACGCGACACGATCTTTGTGC
GGTCTTGCGAGACGCGCGACACCTGGTTTTCAGGCACGAGGTCGATGTTT
AAGACCCGCCATGCCGAGCTTCTGTAGTAATGATTTCGAAGCGAGAAATT
TGCCTCTTGCGCCGATATTCAGACCCGCAGTGACGTTTGGCATCGCCTTT
TCCTTGTCTCTGCTGGCATAATTTTTGTACTGGTCCTTCGCATTCCTCTG
CTTTTCACAGCTGTTGGAGCAATACGCGGAGCAAGTTTCGTGGCAATCTG
AGATCCGACACGAGGCTATTAGGTTTCCTCCTATGGAAAAGATGATTGTG
GATTACCAGGTGAGACGGACGGCGAACGGGGTGGATGAGCACATCTAGCG
GTTTCCGTTCGGTCTGGGACCATTACTCGACGGCTTCCGCTGTTGTAAAC
GCCTGTTCAGCGGCGAGTAATGGTTTACGATGATGAGTGCTTTGAACAGC
GCGTGCTTGGGTAGTTTGGTGCTCTGCCCAGTAAAGATTGGATAGTTTTT
TGTACCGCTCGCGGTGTTTTTTTCAAAATTGTCGTTGTCTTTCTCGAATG
CGTGCTTGCGTAAGCGACCAACAACGGTGTCACCTGGCCGTGTGCTGCAC
GTGGCCACTCAAACGTACGTCCTCTCAGGACCCCGCGAAGGCCGACAAGA
TAACCAAAATTCAGCGGGATCTGAACGAGACGACAGAAGTACTGGTGAGC
AGACCCCCAATCCCCGTTTTGGCGGCCATTTCATGTTGCGGATCCCTCCC
TGAATTCGTAGGGTGCTTCTTCGTCGAGCTCGACCCTTGCTCCCGGAAGG
GCCGTATCATGGCCCGGACTACAAATTCATGGATGCGCACCACACATGAG
CCTCCCCTGTTGTGGGTCTCGCACCGAACACACATGATTTGGTGCACGTG
AGTTCCTGTCTCCCTCTTTGCTTGTCCAGAGTTTTCGTGTCGTTCGACTT
GTTCCTTCATCGCCAATGTCGTTGATCAGCGTCACTCAGACCGACGTCCG
TGGATGTCTCAGTTTAGAACATGTATTTGGGGTTGACACACCAGTTTGAA
CATGAATTTTGACAAGGAAGGGACACACTAATCCTCGCCTTTCGGTGCAT
TCTCTGCGCTGTGCTTTGTGTTCGACACCTCAACCGCAGCACCGAACCAT
CGACAACGTGTTGGAGCGAGGGGTGAGGCTGGATGAGCTCGTGGACCGAT
CGGACGACTTGAGCCGGCAGTCCAAGATGTTCTACAAGCAAGCACGGAAA
ACAAACAGCTGTTGCACCGTGAGCTAAACGTTCAAGAGGGTAGCTCCTTG
GGACAGCAACGTTGCGGCGAAAAAATTGTTCTGCTGACGCTTTCAAAACC
AGTCATGGAGCCTTGGGCGGGCAAGCGATTTGTGTTTGCCTGACCTTTCG
CCCCACCCTTTTTTCTGGATGATAGCCCTCTGTTGAAACGGGCCAGGCGT
CCGAAGCGCCGCTAGCGTACCCAGCGATTGAATTAGCTGGAAAAATGCGA
GGGGGTTGAAATATATTTTCCATAAGCACCCGCTACCTCGGTACCCGCCG
GTGTCGCTATCCCCTTGTTGCGATTTTTTTGGCGGTTGATGGTTTGTGTT
GTACTCAGAGTATCACTTTAAATTGTCTTCGTTGTATCGTAGTTGTCGGT
GAAGGTTGCGGGCACTCTTTCCGTGGTGTAAGTCCCTGTCGTGTTCTCGG
AACGATGTTTTGTACGAAGTGATGGACGCGGTGGATGGTGCTATAATTCG
CGCTGTTGTCAAGGCTTTTGTTGGGTGTCAGGACCAGGCGGATGTGTTGT
GTTTGTCGTTGCGGATTGCGTTTGTGGTCTACAAGGCATGCATCGTGACA
ACAGGGAGCGTGCCTTGATTGTACAGATGCACCTACGTGTCGATGCACCT
TTTCTAACGCCGGCGTGCAGTATCTGATTTGGCTTGCGGAATAACAAATA
CTCTGGAGTATCTTCTTGGAGGCACGGGGAGTACAAAAATGTTGTACCAG
ACGTGCCCGAGAAGCCGCTTACAGTGAACGATGTACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3093213..3097899-

>mRNA_P-fluviatile_contig12.1568.1 ID=mRNA_P-fluviatile_contig12.1568.1|Name=mRNA_P-fluviatile_contig12.1568.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1212bp|location=Sequence derived from alignment at P-fluviatile_contig12:3093213..3097899- (Porterinema fluviatile SAG_2381)
ATGAAGGTGGTGTCAATTTGCACTGTGCGTTACAACCGCGACACCACTGA
ACCTGTGATGTTGTCGCAAGTCAACGACCTTTCATCGTTTGGGTTCTTCC
AACGTCAAGGATGAAGGTGGTGTCAATTTGCACTGTGCGTTACAACCGCG
ACACCACTGAACCTGTGATGTTGTCGCAAGTCAACGACCTTTCATCGTTT
GGGTTCTTCCAACGTCAAGGAATCAAGGAGATGTGCACCTTCTTCAGCAA
GACCATCGTCAAGCGCACCCAACCCGGACAGCGGCAAAGCGTCCAGCACG
AGGAATCAAGGAGATGTGCACCTTCTTCAGCAAGACCATCGTCAAGCGCA
CCCAACCCGGACAGCGGCAAAGCGTCCAGCACGAGGACTACAACGTGCAC
GTATACATGCGGCAAGACGGCTTAGCGGGGACGGTGACTGCGGATCTGGA
ATACCCACCACGAGTGGCGTTCATGTTGCTCACACAGGCGAGCTGCACTA
CAACGTGCACGTATACATGCGGCAAGACGGCTTAGCGGGGACGGTGACTG
CGGATCTGGAATACCCACCACGAGTGGCGTTCATGTTGCTCACACAGGCG
AGCTGCCTGTTGGAGCAATACGCGGAGCAAGTTTCGTGGCAATCTGAGAT
CCGACACGAGGCTATTAGGTTTCCTCCTATGGAAAAGATGATTGTGGATT
ACCAGCTGTTGGAGCAATACGCGGAGCAAGTTTCGTGGCAATCTGAGATC
CGACACGAGGCTATTAGGTTTCCTCCTATGGAAAAGATGATTGTGGATTA
CCAGGACCCCGCGAAGGCCGACAAGATAACCAAAATTCAGCGGGATCTGA
ACGAGACGACAGAAGTACTGGACCCCGCGAAGGCCGACAAGATAACCAAA
ATTCAGCGGGATCTGAACGAGACGACAGAAGTACTGCACCGAACCATCGA
CAACGTGTTGGAGCGAGGGGTGAGGCTGGATGAGCTCGTGGACCGATCGG
ACGACTTGAGCCGGCAGTCCAAGATGTTCTACAAGCAAGCACGGAAAACA
AACAGCTGTTGCACCGTGAGCTAACACCGAACCATCGACAACGTGTTGGA
GCGAGGGGTGAGGCTGGATGAGCTCGTGGACCGATCGGACGACTTGAGCC
GGCAGTCCAAGATGTTCTACAAGCAAGCACGGAAAACAAACAGCTGTTGC
ACCGTGAGCTAA
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