mRNA_P-fluviatile_contig12.1566.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1566.1
Unique NamemRNA_P-fluviatile_contig12.1566.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1566.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-8
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 3 
Query:  840 ELKHPAHPSPHGAVSTAAEDAVPLHAIDERIDDIGRWTRAGVKPGEIFKLPQMDQEGKV*CRDGKKKV 1043
            +L+H  +  P GAVS A E  +PL  ID+R+DDI +WT A +   EIFKL   D E ++ CR GKKKV
Sbjct:  181 DLRH--NHDPRGAVSKAQEKVLPLSFIDDRMDDIRKWTAANLGAQEIFKLLHADGENRLLCRQGKKKV 246
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BLAST of mRNA_P-fluviatile_contig12.1566.1 vs. uniprot
Match: A0A6H5LGH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGH1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.590e-8
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:  867 PHGAVSTAAEDAVPLHAIDERIDDIGRWTRAGVKPGEIFKLPQMDQEGKV*CRDGKKKV 1043
            P GAVS A    +PL  +DER  DI +WT AGV P +IFKL +MD +GK+  + GK+KV
Sbjct:  863 PRGAVSRAQAHVLPLEVVDERYADIRKWTAAGVAPTDIFKLLEMDHDGKILDKVGKRKV 921
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BLAST of mRNA_P-fluviatile_contig12.1566.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.660e-8
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 3 
Query:  840 ELKHPAHPSPHGAVSTAAEDAVPLHAIDERIDDIGRWTRAGVKPGEIFKLPQMDQEGKV*CRDGKKKV 1043
            +L+H  +  P GAVS A E  +PL  ID+R+DDI +WT A +   EIFKL   D E ++ CR GKKKV
Sbjct:  879 DLRH--NHDPRGAVSKAQEKVLPLSFIDDRMDDIRKWTAANLGAQEIFKLLHADGENRLLCRQGKKKV 944
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BLAST of mRNA_P-fluviatile_contig12.1566.1 vs. uniprot
Match: A0A6H5K991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K991_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-7
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    4 DGSQEDGGVDPNPDIRTLRRRAKRYQEMAAKFESKGEMDI 123
            DGSQE GGVDPNP IRTLRRRAK YQEMAAKFESK  +++
Sbjct:  482 DGSQEGGGVDPNPYIRTLRRRAKGYQEMAAKFESKVGLEL 521
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BLAST of mRNA_P-fluviatile_contig12.1566.1 vs. uniprot
Match: A0A6H5L3G4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.740e-5
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 3 
Query:  903 VPLHAIDERIDDIGRWTRAGVKPGEIFKLPQMDQEGKV*CRDGKKKV 1043
            +P   +DER DD+ +WT AGVKP + FKL +MD +G    +DGKKK+
Sbjct:  306 LPPTMVDERFDDVRKWTAAGVKPTDTFKLLEMDYDGLCLAKDGKKKL 352
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KG54_9PHAE3.510e-850.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGH1_9PHAE3.590e-852.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGK0_9PHAE3.660e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K991_9PHAE1.560e-780.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L3G4_9PHAE3.740e-551.06MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3077340..3080365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1043
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1566.1prot_P-fluviatile_contig12.1566.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3077458..3079855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.3620377-UTR-P-fluviatile_contig12:3077339..30774571622815488.3620377-UTR-P-fluviatile_contig12:3077339..3077457Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3077340..3077457 -
1693562046.8092709-UTR-P-fluviatile_contig12:3077339..30774571693562046.8092709-UTR-P-fluviatile_contig12:3077339..3077457Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3077340..3077457 -
1622815488.472703-UTR-P-fluviatile_contig12:3079855..30799281622815488.472703-UTR-P-fluviatile_contig12:3079855..3079928Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3079856..3079928 -
1693562046.8893676-UTR-P-fluviatile_contig12:3079855..30799281693562046.8893676-UTR-P-fluviatile_contig12:3079855..3079928Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3079856..3079928 -
1622815488.4867072-UTR-P-fluviatile_contig12:3080257..30803651622815488.4867072-UTR-P-fluviatile_contig12:3080257..3080365Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3080258..3080365 -
1693562046.8989697-UTR-P-fluviatile_contig12:3080257..30803651693562046.8989697-UTR-P-fluviatile_contig12:3080257..3080365Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3080258..3080365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.376712-CDS-P-fluviatile_contig12:3077457..30775111622815488.376712-CDS-P-fluviatile_contig12:3077457..3077511Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3077458..3077511 -
1693562046.8175902-CDS-P-fluviatile_contig12:3077457..30775111693562046.8175902-CDS-P-fluviatile_contig12:3077457..3077511Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3077458..3077511 -
1622815488.3874357-CDS-P-fluviatile_contig12:3077843..30779091622815488.3874357-CDS-P-fluviatile_contig12:3077843..3077909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3077844..3077909 -
1693562046.8260932-CDS-P-fluviatile_contig12:3077843..30779091693562046.8260932-CDS-P-fluviatile_contig12:3077843..3077909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3077844..3077909 -
1622815488.4051845-CDS-P-fluviatile_contig12:3078089..30782061622815488.4051845-CDS-P-fluviatile_contig12:3078089..3078206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3078090..3078206 -
1693562046.8400798-CDS-P-fluviatile_contig12:3078089..30782061693562046.8400798-CDS-P-fluviatile_contig12:3078089..3078206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3078090..3078206 -
1622815488.4206676-CDS-P-fluviatile_contig12:3078395..30786021622815488.4206676-CDS-P-fluviatile_contig12:3078395..3078602Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3078396..3078602 -
1693562046.8520386-CDS-P-fluviatile_contig12:3078395..30786021693562046.8520386-CDS-P-fluviatile_contig12:3078395..3078602Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3078396..3078602 -
1622815488.4311488-CDS-P-fluviatile_contig12:3078775..30788471622815488.4311488-CDS-P-fluviatile_contig12:3078775..3078847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3078776..3078847 -
1693562046.8619914-CDS-P-fluviatile_contig12:3078775..30788471693562046.8619914-CDS-P-fluviatile_contig12:3078775..3078847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3078776..3078847 -
1622815488.4425669-CDS-P-fluviatile_contig12:3079269..30793441622815488.4425669-CDS-P-fluviatile_contig12:3079269..3079344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3079270..3079344 -
1693562046.8711472-CDS-P-fluviatile_contig12:3079269..30793441693562046.8711472-CDS-P-fluviatile_contig12:3079269..3079344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3079270..3079344 -
1622815488.4585905-CDS-P-fluviatile_contig12:3079702..30798551622815488.4585905-CDS-P-fluviatile_contig12:3079702..3079855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3079703..3079855 -
1693562046.8799713-CDS-P-fluviatile_contig12:3079702..30798551693562046.8799713-CDS-P-fluviatile_contig12:3079702..3079855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3079703..3079855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1566.1

>prot_P-fluviatile_contig12.1566.1 ID=prot_P-fluviatile_contig12.1566.1|Name=mRNA_P-fluviatile_contig12.1566.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=248bp
MRSNLDDECEIVSYDVFMDDGTRLETVPASAVEADVDHGRELKARGTSQG
KEDDDSDSKKDSHGLQTGGGERKMTNEDDGSDSDNSSGPHSKDGARKSQQ
DSGSSEDPPNKERKEKRWGGGDAEGVARVGRMFDAKGSPDATWDHVFSTL
LGELAEKGHHTLLSRKKKRTADKRRYSYCEIICKHAGVPRKRAEPAPGTK
SRKCTNQEIGCPFKLAITWRVEAPSPSITSRSGVDSRGGRCPVTRHR*
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mRNA from alignment at P-fluviatile_contig12:3077340..3080365-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1566.1 ID=mRNA_P-fluviatile_contig12.1566.1|Name=mRNA_P-fluviatile_contig12.1566.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3026bp|location=Sequence derived from alignment at P-fluviatile_contig12:3077340..3080365- (Porterinema fluviatile SAG_2381)
GAGGACGGTAGCCAGGAGGACGGAGGCGTGGACCCGAACCCTGATATTCG
TACACTCCGGCGCAGGGCCAAAAGATATCAGGAAATGGCTGCCAAGTTCG
AGTCTAAGGTGGGGTTGGAGTTGTGAGGATATACGGGGTATTTCACGCTC
CATGGCATGAGGTGGACGAAAATCAGGATTTCTTACCTTCATTGAAGGTT
GAAGCAGAGGTCTCCTGCGCATGTTGAGAGCACACGCTCCTCAGTATTTT
CCCCCTATGTTATGTGTAGGGCACGGTGCCTGCGTTTGGATGTGTCTGTT
CCGAAGCGATATTCTTTGACGTTTCGTTGCGCAATGCCGAGAGTGGATGA
ATGCTCGGTTAGCCGTCGAGTCGGCGGTGTATTGTGGGAAGTAAACGGAC
GACTCCAACCTCCTTTCCGCTGATCATTTGCATGCAGGGGGAAATGGACA
TCACGGCAGGCACTCGCTTCCACACTGGCGGTTGGTCGGCGGACGGGGGT
GGGGACAGTAATGCGAAGCAACCTAGACGACGAGTGTGAGATAGTGTCGT
ACGATGTCTTTATGGACGATGGCACGCGACTGGAGACGGTACCCGCCTCC
GCGGTCGAGGCAGACGTAGACCACGGCAGAGAATTGAAGGCGCGGGGAAC
CAGCCAAGGGAAGGTGAGCCGCGTGTAACGTTAATGAAGCGGGCATTTAT
CGGGGTGGGTGCGTTTGTAGTTCCTTACCCTAAGACTTACGGGATATTGG
TGCGACTGTTTTGTCCGTTTCATCCAGTCTGATTGCAGGAGTTTTGCAGG
TGGCCACGGGTTAAACGTGATGATTCACGGGGCTGTCGGGATCGTACTCA
TCGTGACGTTTCCCCCCCTCCTAGTGTGTTGTGCCTTTTTCTTCATACAC
GCGGTCAACCACAACTCAAAAAGCAGACAAAGACGACGACCTGATGACCG
AATACCAGCGTTTCCCGTGGTAGTGGCAGGGTTTTCACAATCGTGGCACT
GTCGTTGCGCCGTGAAAACAGGAGGATGACGACTCCGACAGCAAGAAAGA
TTCACACGGCCTTCAGACCGGGGGTGGAGAGCGCAAGATGACAAATGTGA
GCCTTGCCGTAGCTCCGGCGCGCAGGTATTGCCTCTTGTCGTGTGGCATA
TCCCGGGCGCACAGGTGTCGTCTGGCATTGCGGTTGCTCCCGATATGGTA
GTGGTGTCACAACTGGCAATCGTAACGTCCTACCTACCGTTATGTTGTCT
CCGTGCCGAGCTAGCAGGAGGACCACGACCCCGACACGGAGAAAGAGTCA
GACGGGCGGCAGAGCGGGGTGGAGGGCCAGATATAAAAACGTGAGCTTCC
CAAATGTTTGGCCATGAAAATGTTCGAGGTGTGGCCATCCACATTCTTTT
GGGTCTATTCTATTTGGCGCGTGTTCGTCGTGGCTCGCCGAATTTGCCGA
AGTCTTAGGTATATTGTCAAACTTGAGTTCTTTGGCACGGTCGTGGTGGC
GTCGTCCGATGGAAACAGGAGGACGACGGATCAGACAGCGACAATTCGTC
CGGACCTCATAGCAAGGATGGCGCACGAAAAAGCCAGCAGGCATTCGGCA
CGCACGTCTCACGTACTGATTCAGGGAATGTCTCCACGTACGTGTTCGTT
CAACATCGACTAGTCGTGAAAGGTTAGGGGGCAAGCGTGGGACCATTGAC
ATTGATATCGGTTCCTCTGTTGAATGTTTTCCTGTTGGCCCGTTTCTGTT
TCGCTTGAGCCAGGACAGCGGCAGCAGCGAAGACCCCCCAAACAAGGAAC
GGAAAGAGAAGCGGTGGGGTGGGGGGGACGCGGAAGGGGTAGCGAGAGTT
GGGCGTATGTTCGATGCGAAGGGTTCCCCGGACGCGACTTGGGACCACGT
GTTCTCAACGCTTCTTGGCGAGCTTGCAGAGAAAGGGCATCACACCCTCT
TGAGCAGAAAAAAAAAGAGGGTGAGTCCTGACTGGTGCACTTGGTGACGG
CTACTGGGCGGCTTATTTCGTTGGTTGAGATTTCTTTCGGTCGCTCGTTT
TTGCTCGCTTTTGCTTGCCATGAGGCTATCAAAGGTCCCCAAGAGTATTC
GCATGATTCCTGAGTAACCCCTGCGACTGCTCTGTTCACCGATGCATACG
CATACGCAGACTGCAGACAAGCGGAGATACAGCTACTGCGAGATCATCTG
CAAACACGCTGGAGTGCCGCGTAAGAGGGCAGAACCCGCACCTGGGACGA
AGAGCAGAAAGTGCACAAACCAGGAGGTGAGTCTGCTGTTGTGCCGTCGG
AACTGTACTGGAACGGTTTGAAGGCAGCCTGCGTGGGCGCACCGCGCGTT
ACTCGCGGGTCGTAGAGTCTTTCAAAGATCATGGCCACAAAGAGTCTGAG
CGTCTGACATCGCAGCTCGTGCGCGCCCCTCACCTACGTCTTCGTAACTG
TGACAGATCGGATGCCCGTTCAAGCTGGCAATAACTTGGCGAGTTGAAGC
ACCCAGCCCATCCATCACCTCAGTGAGTCGTGGCCAAGACGCGTTGTCGG
AGCGACGCCCTTGACGTTTCGTTTGGCTGGGATCTGAAGGGTTTTGTCGT
TTTTATCCCTACGTATTCATGTTCGATTTCCGTATTCCGATTTTCGTTTT
CGGGGCTGCCGTACGACCAGGTCGTGTTCCATTGGGCCGTTCCATTGCGA
CACAAATCAAGCGCTGATTTCAGGTCGTGAACCACTTTGGAATCGGAATC
CTTGAAGCGTACGCGTGATTGTTGGGACCCGTTGTATGTCGCCGCTCCGT
CCCCGCCCTGCCTCCTTAACGGAAGTCATACTGCGGGCACAACCACAATC
CCAGCGGAGCGGTGTCGACAGCCGCGGAGGACGCTGTCCCGTTACACGCC
ATCGATGAGAGGATAGACGACATTGGAAGGTGGACACGAGCGGGTGTGAA
GCCTGGAGAAATCTTCAAGCTACCTCAAATGGATCAAGAGGGCAAGGTTT
AGTGCAGGGACGGGAAGAAGAAGGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3077340..3080365-

>mRNA_P-fluviatile_contig12.1566.1 ID=mRNA_P-fluviatile_contig12.1566.1|Name=mRNA_P-fluviatile_contig12.1566.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1488bp|location=Sequence derived from alignment at P-fluviatile_contig12:3077340..3080365- (Porterinema fluviatile SAG_2381)
ATGCGAAGCAACCTAGACGACGAGTGTGAGATAGTGTCGTACGATGTCTT
TATGGACGATGGCACGCGACTGGAGACGGTACCCGCCTCCGCGGTCGAGG
CAGACGTAGACCACGGCAGAGAATTGAAGGCGCGGGGAACCAGCCAAGGG
AAGATGCGAAGCAACCTAGACGACGAGTGTGAGATAGTGTCGTACGATGT
CTTTATGGACGATGGCACGCGACTGGAGACGGTACCCGCCTCCGCGGTCG
AGGCAGACGTAGACCACGGCAGAGAATTGAAGGCGCGGGGAACCAGCCAA
GGGAAGGAGGATGACGACTCCGACAGCAAGAAAGATTCACACGGCCTTCA
GACCGGGGGTGGAGAGCGCAAGATGACAAATGAGGATGACGACTCCGACA
GCAAGAAAGATTCACACGGCCTTCAGACCGGGGGTGGAGAGCGCAAGATG
ACAAATGAGGACGACGGATCAGACAGCGACAATTCGTCCGGACCTCATAG
CAAGGATGGCGCACGAAAAAGCCAGCAGGAGGACGACGGATCAGACAGCG
ACAATTCGTCCGGACCTCATAGCAAGGATGGCGCACGAAAAAGCCAGCAG
GACAGCGGCAGCAGCGAAGACCCCCCAAACAAGGAACGGAAAGAGAAGCG
GTGGGGTGGGGGGGACGCGGAAGGGGTAGCGAGAGTTGGGCGTATGTTCG
ATGCGAAGGGTTCCCCGGACGCGACTTGGGACCACGTGTTCTCAACGCTT
CTTGGCGAGCTTGCAGAGAAAGGGCATCACACCCTCTTGAGCAGAAAAAA
AAAGAGGGACAGCGGCAGCAGCGAAGACCCCCCAAACAAGGAACGGAAAG
AGAAGCGGTGGGGTGGGGGGGACGCGGAAGGGGTAGCGAGAGTTGGGCGT
ATGTTCGATGCGAAGGGTTCCCCGGACGCGACTTGGGACCACGTGTTCTC
AACGCTTCTTGGCGAGCTTGCAGAGAAAGGGCATCACACCCTCTTGAGCA
GAAAAAAAAAGAGGACTGCAGACAAGCGGAGATACAGCTACTGCGAGATC
ATCTGCAAACACGCTGGAGTGCCGCGTAAGAGGGCAGAACCCGCACCTGG
GACGAAGAGCAGAAAGTGCACAAACCAGGAGACTGCAGACAAGCGGAGAT
ACAGCTACTGCGAGATCATCTGCAAACACGCTGGAGTGCCGCGTAAGAGG
GCAGAACCCGCACCTGGGACGAAGAGCAGAAAGTGCACAAACCAGGAGAT
CGGATGCCCGTTCAAGCTGGCAATAACTTGGCGAGTTGAAGCACCCAGCC
CATCCATCACCTCAATCGGATGCCCGTTCAAGCTGGCAATAACTTGGCGA
GTTGAAGCACCCAGCCCATCCATCACCTCACGGAGCGGTGTCGACAGCCG
CGGAGGACGCTGTCCCGTTACACGCCATCGATGACGGAGCGGTGTCGACA
GCCGCGGAGGACGCTGTCCCGTTACACGCCATCGATGA
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