mRNA_P-fluviatile_contig12.1553.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1553.1
Unique NamemRNA_P-fluviatile_contig12.1553.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2938830..2939141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.4926147-CDS-P-fluviatile_contig12:2938829..29391411622815490.4926147-CDS-P-fluviatile_contig12:2938829..2939141Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2938830..2939141 +
1693562048.310478-CDS-P-fluviatile_contig12:2938829..29391411693562048.310478-CDS-P-fluviatile_contig12:2938829..2939141Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2938830..2939141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1553.1prot_P-fluviatile_contig12.1553.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2938830..2939141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1553.1

>prot_P-fluviatile_contig12.1553.1 ID=prot_P-fluviatile_contig12.1553.1|Name=mRNA_P-fluviatile_contig12.1553.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
LAFKDYCELKPWQCTSVSTMIRHFRRNVRIAPEPPSIRFSRALQQNLSGS
QNPISRQSIEIEHKQTLLGQCTAVRTLQAAPTQFSNESGLIAAVYDFVGY
VVC*
back to top

mRNA from alignment at P-fluviatile_contig12:2938830..2939141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1553.1 ID=mRNA_P-fluviatile_contig12.1553.1|Name=mRNA_P-fluviatile_contig12.1553.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=312bp|location=Sequence derived from alignment at P-fluviatile_contig12:2938830..2939141+ (Porterinema fluviatile SAG_2381)
CTTGCCTTCAAGGACTACTGCGAGTTAAAACCTTGGCAGTGCACCTCTGT
CAGTACAATGATTCGACATTTCCGCCGCAACGTGCGAATCGCTCCAGAGC
CGCCTTCCATAAGATTTTCAAGAGCGCTGCAGCAAAACCTTTCAGGTTCT
CAAAACCCGATCTCCAGGCAATCGATCGAAATCGAGCACAAACAGACCCT
TCTTGGACAGTGCACTGCCGTGCGTACCCTCCAGGCAGCTCCAACCCAAT
TTTCAAATGAATCTGGCCTTATTGCAGCCGTGTATGATTTTGTCGGTTAC
GTTGTTTGCTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:2938830..2939141+

>mRNA_P-fluviatile_contig12.1553.1 ID=mRNA_P-fluviatile_contig12.1553.1|Name=mRNA_P-fluviatile_contig12.1553.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig12:2938830..2939141+ (Porterinema fluviatile SAG_2381)
CTTGCCTTCAAGGACTACTGCGAGTTAAAACCTTGGCAGTGCACCTCTGT
CAGTACAATGATTCGACATTTCCGCCGCAACGTGCGAATCGCTCCAGAGC
CGCCTTCCATAAGATTTTCAAGAGCGCTGCAGCAAAACCTTTCAGGTTCT
CAAAACCCGATCTCCAGGCAATCGATCGAAATCGAGCACAAACAGACCCT
TCTTGGACAGTGCACTGCCGTGCGTACCCTCCAGGCAGCTCCAACCCAAT
TTTCAAATGAATCTGGCCTTATTGCAGCCGTGTATGATTTTGTCGGTTAC
GTTGTTTGCTGACTTGCCTTCAAGGACTACTGCGAGTTAAAACCTTGGCA
GTGCACCTCTGTCAGTACAATGATTCGACATTTCCGCCGCAACGTGCGAA
TCGCTCCAGAGCCGCCTTCCATAAGATTTTCAAGAGCGCTGCAGCAAAAC
CTTTCAGGTTCTCAAAACCCGATCTCCAGGCAATCGATCGAAATCGAGCA
CAAACAGACCCTTCTTGGACAGTGCACTGCCGTGCGTACCCTCCAGGCAG
CTCCAACCCAATTTTCAAATGAATCTGGCCTTATTGCAGCCGTGTATGAT
TTTGTCGGTTACGTTGTTTGCTGA
back to top