mRNA_P-fluviatile_contig12.1550.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1550.1
Unique NamemRNA_P-fluviatile_contig12.1550.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1550.1 vs. uniprot
Match: D7G907_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G907_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.130e-11
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   34 FKELVNKTKNGLGKLRRSLSPGKNKGGSSKTPLAEGVGAVLDAIDELVAEGQAVAGKANKKMKE 225
            FK+   KTKNGLGK+R+SL+  K+K    + PL EGV AVLDAIDE VAEG+   GKA + +K+
Sbjct:   32 FKKFFTKTKNGLGKVRKSLAVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKK 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G907_ECTSI4.130e-1156.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2925357..2926763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002380.1
Exons2
Model size498
Cds size498
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.283757-CDS-P-fluviatile_contig12:2925356..29254791622815488.283757-CDS-P-fluviatile_contig12:2925356..2925479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2925357..2925479 +
1693562046.7836392-CDS-P-fluviatile_contig12:2925356..29254791693562046.7836392-CDS-P-fluviatile_contig12:2925356..2925479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2925357..2925479 +
1622815488.310034-CDS-P-fluviatile_contig12:2926388..29267631622815488.310034-CDS-P-fluviatile_contig12:2926388..2926763Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2926389..2926763 +
1693562046.7962234-CDS-P-fluviatile_contig12:2926388..29267631693562046.7962234-CDS-P-fluviatile_contig12:2926388..2926763Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2926389..2926763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1550.1prot_P-fluviatile_contig12.1550.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2925357..2926763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1550.1

>prot_P-fluviatile_contig12.1550.1 ID=prot_P-fluviatile_contig12.1550.1|Name=mRNA_P-fluviatile_contig12.1550.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=166bp
MRTVPCWPNRFFKELVNKTKNGLGKLRRSLSPGKNKGGSSKTPLAEGVGA
VLDAIDELVAEGQAVAGKANKKMKETAGGTKESVKDATGVSKDKLDAASA
EVKSTADAAVASAAAGVDSYREGIEDLAAKGDTSAETAAESAVAASEELQ
DAVEKSVEAATEALAE
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mRNA from alignment at P-fluviatile_contig12:2925357..2926763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1550.1 ID=mRNA_P-fluviatile_contig12.1550.1|Name=mRNA_P-fluviatile_contig12.1550.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1407bp|location=Sequence derived from alignment at P-fluviatile_contig12:2925357..2926763+ (Porterinema fluviatile SAG_2381)
ATGCGGACGGTCCCCTGCTGGCCTAACAGATTTTTCAAGGAGCTCGTGAA
CAAAACTAAGAACGGCCTGGGCAAATTGCGGCGAAGTCTATCACCGGGCA
AGAACAAAGGAGGAAGTTCGAAGGTGAGTCTGGCACGCTTCGTGCATGCG
GTACAGATTCGTGGTATCCAAAGGCGCTAGCTACACACGTTTGCGCTACA
TGTCAAGAAAGACTGATTGTTTACGCCATCTTGAGGTAAAGGGGCTTCCT
TTCCGCTCCTTTTGCGGTAGAGGTTGGACACACATACTGCATATTTTGTG
CACAAATATTCTACAGGCTACTTTCGATCCAGCTCAAAAATCGCCTCGAT
GCCTTAAAGCCCATGACGATCGTATCCTGCTTGAAGGAAACGCGGCGGTG
GGCGGAAGATGGTCCTACATGATTTTTTGGCGGTAGAAGTGTTTGGTTTA
GTGATTGCCCGAAGCCAATGTGTTTCAACTGAGTTTACCACTTCTCGCGT
TTTCATCATCTGCGTCAAAGTCTCGGAGGATACGCGGTGTCGACAACAAC
TACAAAAATTCCGCCTGAAACCAGCTTTGGATGACCATCGTTCCCCCTAC
GACAAACAATAATGTACATTACGGACGGCAAACGTTTCCCGCGTCAAGCG
AGTTGACCGCATGTTACACATGTGTTGCTAGCTACGTGGTGCGACATATT
CCGGTCACGGCGTGACAAGAGCCCGGAACAGAAGCATTGATAGGGTGTTT
ACGCAGACCTCCGCACGAAAAACCAGTAGTTGGCACACGTTTTCGCTCAG
ATTCGGCGCCATCATGGGGCCATTTTCGCAGGTTCTTCCCGTTTCCTTTT
TGTTGAAGCCACCGAATTTCCCATTTGTCTTGATGACAATCGGCTAGATC
ATCTTTACCCTATGCCATCGGGCACGACACGCGAGTGTGTGATTTCTATG
GGAAGAAGAAAGGAAGATCACGTTGTGTTCATGACACTGAGTTATCATCT
GCCGTCGCTTTCAATCCCTTTTCGTCCTCAAGACCCCACTGGCAGAAGGA
GTTGGTGCAGTACTCGATGCGATCGATGAGTTGGTAGCAGAGGGACAGGC
AGTCGCGGGCAAAGCAAACAAGAAGATGAAGGAGACTGCGGGCGGCACCA
AGGAATCGGTTAAAGATGCAACAGGTGTTTCCAAGGACAAGCTAGATGCT
GCGAGTGCGGAAGTGAAGTCAACGGCGGACGCAGCCGTTGCGAGTGCTGC
AGCCGGAGTAGATTCGTATAGGGAAGGTATCGAGGATCTGGCAGCCAAGG
GCGACACGTCTGCCGAAACGGCCGCCGAATCTGCTGTGGCAGCTTCTGAG
GAGCTACAAGATGCTGTGGAAAAGTCAGTCGAGGCAGCCACCGAGGCATT
GGCTGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2925357..2926763+

>mRNA_P-fluviatile_contig12.1550.1 ID=mRNA_P-fluviatile_contig12.1550.1|Name=mRNA_P-fluviatile_contig12.1550.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=996bp|location=Sequence derived from alignment at P-fluviatile_contig12:2925357..2926763+ (Porterinema fluviatile SAG_2381)
ATGCGGACGGTCCCCTGCTGGCCTAACAGATTTTTCAAGGAGCTCGTGAA
CAAAACTAAGAACGGCCTGGGCAAATTGCGGCGAAGTCTATCACCGGGCA
AGAACAAAGGAGGAAGTTCGAAGATGCGGACGGTCCCCTGCTGGCCTAAC
AGATTTTTCAAGGAGCTCGTGAACAAAACTAAGAACGGCCTGGGCAAATT
GCGGCGAAGTCTATCACCGGGCAAGAACAAAGGAGGAAGTTCGAAGACCC
CACTGGCAGAAGGAGTTGGTGCAGTACTCGATGCGATCGATGAGTTGGTA
GCAGAGGGACAGGCAGTCGCGGGCAAAGCAAACAAGAAGATGAAGGAGAC
TGCGGGCGGCACCAAGGAATCGGTTAAAGATGCAACAGGTGTTTCCAAGG
ACAAGCTAGATGCTGCGAGTGCGGAAGTGAAGTCAACGGCGGACGCAGCC
GTTGCGAGTGCTGCAGCCGGAGTAGATTCGTATAGGGAAGGTATCGAGGA
TCTGGCAGCCAAGGGCGACACGTCTGCCGAAACGGCCGCCGAATCTGCTG
TGGCAGCTTCTGAGGAGCTACAAGATGCTGTGGAAAAGTCAGTCGAGGCA
GCCACCGAGGCATTGGCTGAGACCCCACTGGCAGAAGGAGTTGGTGCAGT
ACTCGATGCGATCGATGAGTTGGTAGCAGAGGGACAGGCAGTCGCGGGCA
AAGCAAACAAGAAGATGAAGGAGACTGCGGGCGGCACCAAGGAATCGGTT
AAAGATGCAACAGGTGTTTCCAAGGACAAGCTAGATGCTGCGAGTGCGGA
AGTGAAGTCAACGGCGGACGCAGCCGTTGCGAGTGCTGCAGCCGGAGTAG
ATTCGTATAGGGAAGGTATCGAGGATCTGGCAGCCAAGGGCGACACGTCT
GCCGAAACGGCCGCCGAATCTGCTGTGGCAGCTTCTGAGGAGCTACAAGA
TGCTGTGGAAAAGTCAGTCGAGGCAGCCACCGAGGCATTGGCTGAG
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