mRNA_P-fluviatile_contig12.1546.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1546.1
Unique NamemRNA_P-fluviatile_contig12.1546.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1546.1 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 1.620e-100
Identity = 191/269 (71.00%), Postives = 212/269 (78.81%), Query Frame = 2 
Query:  260 MLSSPSAGGRRIAGNYA-RGSPGVVRRASSKPIAIIRSTSVPGQLQDRSLAGDPEAGGGSGGKTTSRRGLHFRDRSLQHDFNISGAGARHGIAQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQASVESFTSECGALSTSLKTNRLYAASCPANLGAHFGRPPGSKISSMPVLEEGSPDEEE---AREGRRSTEPKSITALSILESFSSAAGQKTAAPADGSAVDAESVESADSGAEE-LHVEDDVFDLE-LDG---DLEVLSLSERG 1039
            MLSSPSAGG R+AGNYA RGSPGVVRR +S+PI+IIRSTSVP QLQDR+ AGDP+  GGSGG   +RRGLH RDRSLQHDFN   AG  +GI QSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQA   SF S+CGALSTSLK NRLYA SCPAN+GAHFGRPPGS++ SM VL EGS DEEE   A EG  ++  K ITALSILES S    Q  AAP DGS VDAESVES  +  +E L +EDDVF+L+ L+G   +LE LSLSE G
Sbjct:    1 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQAD-NSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEGSLDEEEEEAAEEGAEAS--KRITALSILESLS----QTPAAPVDGSRVDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLSEAG 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G904_ECTSI1.620e-10071.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2891515..2894833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002420.1
Exons5
Model size1912
Cds size846
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.975955-UTR-P-fluviatile_contig12:2891514..28917191622815524.975955-UTR-P-fluviatile_contig12:2891514..2891719Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2891515..2891719 +
1693562133.9263153-UTR-P-fluviatile_contig12:2891514..28917191693562133.9263153-UTR-P-fluviatile_contig12:2891514..2891719Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2891515..2891719 +
1622815525.0509307-UTR-P-fluviatile_contig12:2893972..28948331622815525.0509307-UTR-P-fluviatile_contig12:2893972..2894833Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2893973..2894833 +
1693562133.982127-UTR-P-fluviatile_contig12:2893972..28948331693562133.982127-UTR-P-fluviatile_contig12:2893972..2894833Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2893973..2894833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.9903245-CDS-P-fluviatile_contig12:2891719..28918371622815524.9903245-CDS-P-fluviatile_contig12:2891719..2891837Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2891720..2891837 +
1693562133.9341595-CDS-P-fluviatile_contig12:2891719..28918371693562133.9341595-CDS-P-fluviatile_contig12:2891719..2891837Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2891720..2891837 +
1622815525.0017493-CDS-P-fluviatile_contig12:2892060..28923681622815525.0017493-CDS-P-fluviatile_contig12:2892060..2892368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2892061..2892368 +
1693562133.9424734-CDS-P-fluviatile_contig12:2892060..28923681693562133.9424734-CDS-P-fluviatile_contig12:2892060..2892368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2892061..2892368 +
1622815525.012105-CDS-P-fluviatile_contig12:2892906..28929721622815525.012105-CDS-P-fluviatile_contig12:2892906..2892972Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2892907..2892972 +
1693562133.9513786-CDS-P-fluviatile_contig12:2892906..28929721693562133.9513786-CDS-P-fluviatile_contig12:2892906..2892972Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2892907..2892972 +
1622815525.024589-CDS-P-fluviatile_contig12:2893240..28935491622815525.024589-CDS-P-fluviatile_contig12:2893240..2893549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2893241..2893549 +
1693562133.9609706-CDS-P-fluviatile_contig12:2893240..28935491693562133.9609706-CDS-P-fluviatile_contig12:2893240..2893549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2893241..2893549 +
1622815525.0384297-CDS-P-fluviatile_contig12:2893927..28939721622815525.0384297-CDS-P-fluviatile_contig12:2893927..2893972Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2893928..2893972 +
1693562133.9711196-CDS-P-fluviatile_contig12:2893927..28939721693562133.9711196-CDS-P-fluviatile_contig12:2893927..2893972Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2893928..2893972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1546.1prot_P-fluviatile_contig12.1546.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2891720..2893972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1546.1

>prot_P-fluviatile_contig12.1546.1 ID=prot_P-fluviatile_contig12.1546.1|Name=mRNA_P-fluviatile_contig12.1546.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=282bp
MEDNSRGATAKNQPKSSAMLSSPSAGGRRIAGNYARGSPGVVRRASSKPI
AIIRSTSVPGQLQDRSLAGDPEAGGGSGGKTTSRRGLHFRDRSLQHDFNI
SGAGARHGIAQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQASVESFTS
ECGALSTSLKTNRLYAASCPANLGAHFGRPPGSKISSMPVLEEGSPDEEE
AREGRRSTEPKSITALSILESFSSAAGQKTAAPADGSAVDAESVESADSG
AEELHVEDDVFDLELDGDLEVLSLSERGKDV*
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mRNA from alignment at P-fluviatile_contig12:2891515..2894833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1546.1 ID=mRNA_P-fluviatile_contig12.1546.1|Name=mRNA_P-fluviatile_contig12.1546.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3319bp|location=Sequence derived from alignment at P-fluviatile_contig12:2891515..2894833+ (Porterinema fluviatile SAG_2381)
ACCACGGGTTGAGGTTTCATACTAGGGCGTCCTCACCTGAATCACCAAGG
GGTCACCCGCAGCTCAAGTGCGTATCGCTACCCGTGTCGACGGCATTATT
TCTCTTTGCAGTTGTTCAATCCACACTGCTGTCTTCTGTACGCCACTTCC
CTGTGCTCTCTCTCTCTCACCCAGGTTGGTGTTCAAGGGTGAACAACTGC
CGTACATGGAAGATAATTCCAGAGGGGCAACCGCCAAGAACCAACCCAAA
TCATCAGCTATGCTATCTAGTCCTTCTGCCGGGGGGCGGCGAATCGCCGG
AAACTACGCCCGTGGGTCTCCCGGTAAGGATTTGTTGTGTACTCATGCAC
GCTTGCGTTTGTCGCGAACAGTTTTCGCGTAAAAAGTTGCACACGTGAAC
CAGCAACTAGTCGGATCACTCGCGGAGAGAGCTTCCCTCTTGTGGGCGAA
AAAATAAAAAAAATCTCTCTCGGCTTGTGTAGCTGGACGGAGATCGAGCT
TACCACCACCGTACGTGCGGCTTGTCTCGAATCTGTTCCCGACCAGGCGT
GGTGCGACGGGCGAGTAGCAAACCGATTGCGATCATCCGCTCTACATCGG
TCCCCGGGCAGCTCCAAGATAGGTCCCTAGCCGGCGACCCAGAAGCGGGA
GGTGGCAGCGGAGGCAAAACGACCAGCAGGAGGGGGCTTCACTTTAGGGA
CAGGAGTTTACAGCACGATTTCAACATCAGCGGGGCAGGAGCGCGTCATG
GGATCGCACAGTCTCTCCCGCCTCCGCAAGCTCCGCTGCTGGCGGGCTCC
CTCCCCCCGTCGCGATTTTTGGATGACTTGCCACCCCTCTCGTTGGGACC
GCAGGTGTATTGGACGAATGAGACGAAACGGGACGTCATCCTTCCGTCAT
TTGTCGGAACATCTTAGTTTCACTTGATGTAAATGTCGTGGATTGACTAT
ATGACATGTGTTTCGATTTTTTGTACTAGAGAAGTATTTGATTGCGTGAA
TATCGAACTATCGAATGCCGCTATCAACCCATCTCGGTATTTGCAGGACA
ACAGTCCAGGTAGTGTTGGTGCGAATCAGCGCCAAAGTGTTGTGTTTATT
GCTCAGCATTGTCGAGCGGTGAGAAGAAGCCGCCAAGGCTCTGCCAACGA
GGTTGCTGAAGCGTAGAAACTTGTCGGCGATTTCAATAATATGGTTTTCC
TTCGTTTTCAGTGGTGGTGATACGATGTACGAGTGCAACGGATTGAGATT
CCCAGTTGCGGGCCTACCAGGTGAAGTCTGTCGTTGAACATATGTTTGAA
ATCTTGGAAGAAAAAAGGTTGCACGCAATCCCTCGTCTCTAATCCTTACA
ACTCATTGGTGGTGTCGCACGATCCTTGTTTCGCTGGCGCAGGCTAGCGT
CGAATCGTTTACATCCGAATGCGGTGCGCTTTCGACTTCGTTGAAGACAA
ACCGCTTGGTGAGTGGGCCCCTCCGCTGTTTGGTTACCATGATAATTTTG
AACGGTTTATGTCAAGTTCAAAGAGAAAGAGTGGACCGAAAAACATGCTT
CGAAGGAGTTGCTTCCGCGCTGCTGCACTCGAGTCGCTGGATGGAACTTA
ACCCACGGAACACTGCTGGTGCATTACAACGAATAGCTCACCATTGGTCG
CGCTTGCGATATCTTTGTCTCACCACTGTCCTCTTCGACAACACTGTGTG
CCGACTCCGGTGTGGGCAACAATCAGTACGCGGCGTCTTGCCCGGCGAAC
CTCGGAGCGCATTTCGGTCGCCCACCAGGATCGAAGATCAGTTCCATGCC
TGTGCTCGAGGAGGGGTCGCCCGACGAGGAGGAAGCGAGAGAGGGGAGAC
GTTCGACGGAGCCGAAGAGCATTACCGCTCTGTCTATCTTAGAATCCTTT
TCTTCCGCGGCGGGGCAGAAAACTGCCGCGCCCGCCGATGGCTCTGCCGT
GGACGCGGAATCCGTCGAAAGCGCCGACAGCGGCGCAGAAGAGTTGCATG
TCGAGGACGACGTGTTCGATCTCGAGCTCGATGGGGTGAGTAGCTAGCGT
ATCATAGCGTGGGAAATGATGCCATTGTCAGTTTCGACAATGATTTTGGC
GAAGGGCCGATCCGATCAGTTTTTGTTGGACTGGCGCGGAAAAGTTGGCT
CGGTCAGGCTCGTGGAGTGTTTACGAGAATTTCGCAAGGGCGACCCTACA
CGTGCGATGCGGTCGAATATTTGCACAACATCGGATATCAGGTACGCCGG
GAACACGCGGACGCTTTTAGTGATAATTCTCCCAGATATTGCAGTGAAGT
GGTCGTCGAGAGATGTCAAAGTCTTGCGCGTCCACTTTGACCGCAATGGA
TCATGGTTGTGGTCTTCCACTGTCACTCACCGAAAATCTGTGGTCAAATC
ATGCTGTCTTCAGGATCTGGAGGTGCTTTCTCTTTCCGAACGAGGCAAGG
ATGTGTGACTCTCTTAAGGCCTGCTTCATGTGGACTGCTCACGAACTGCA
AACGTGTAATTATCACGCTCCTTTTGAGCCGCTTCAATGGCAGGCTCTGG
GCTCCCCTGCTTTGCGACCCCGCGGTGAACGCTGCGTTGCACATGTAATC
CCAAAAGAAAAGAAGTCAACTACTGGATTGTTCGTTTTTGATGCGTGTTT
CGGGCTCTTGAGTGTGTGTGTGTGTTGAGTGCAACAACTCGCCGGTCGAA
ACGGTCACACGCACAGACGGCGGTGTGGTCGGACAGGAATCGGTACTGCG
AGCGTGGAGGTCTGGGGTCACCGTTTTTTAGCGCAGCAGCGCGATGCACC
CCTGTGTTAAATGGCCCACGCAATTTATTTATTTATTTTAGTTTCGCGCC
GCAGTCCCCTTGTGTGGGCGACAGGGTGTATGATTGAAATTGCAATTTTT
TTTTGTCAACAGGATCATTTTTAAATAGCAAAAAATCGCGGGTTTTGCCA
CTTTCAGATCGGGAAAGAAGTAGCGGCATCGGCTTAAGCTGCGGCGTGAC
AATAAATGAGTTGGAACTGGTTGGATCGTGCCGTCATCTCGTGAGGGGAA
CAGGGCGCTGAGGATTGGCTCGGTTCGTGAGCGTTCAACTGTAGAAAGAT
GACCGCTCACATTGGTGGCAAGTTCGACTTGTAGTCGGCGGCAGCAAGCT
GTTATCACTCAAACATCCCGTTTGATGACCCATGGTATGCAAGGGATAAG
ACAAAAGTGGTGGAGGGTCGCTGATAAGGCACGGGCTGTGGCGTTTCTTT
TCGACGGTCGGTGTGATGGGGTGCAGCAGGTAGATGCGATCTTGCTATCC
GTTTACGATGCAAAGTGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2891515..2894833+

>mRNA_P-fluviatile_contig12.1546.1 ID=mRNA_P-fluviatile_contig12.1546.1|Name=mRNA_P-fluviatile_contig12.1546.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1692bp|location=Sequence derived from alignment at P-fluviatile_contig12:2891515..2894833+ (Porterinema fluviatile SAG_2381)
ATGGAAGATAATTCCAGAGGGGCAACCGCCAAGAACCAACCCAAATCATC
AGCTATGCTATCTAGTCCTTCTGCCGGGGGGCGGCGAATCGCCGGAAACT
ACGCCCGTGGGTCTCCCGATGGAAGATAATTCCAGAGGGGCAACCGCCAA
GAACCAACCCAAATCATCAGCTATGCTATCTAGTCCTTCTGCCGGGGGGC
GGCGAATCGCCGGAAACTACGCCCGTGGGTCTCCCGGCGTGGTGCGACGG
GCGAGTAGCAAACCGATTGCGATCATCCGCTCTACATCGGTCCCCGGGCA
GCTCCAAGATAGGTCCCTAGCCGGCGACCCAGAAGCGGGAGGTGGCAGCG
GAGGCAAAACGACCAGCAGGAGGGGGCTTCACTTTAGGGACAGGAGTTTA
CAGCACGATTTCAACATCAGCGGGGCAGGAGCGCGTCATGGGATCGCACA
GTCTCTCCCGCCTCCGCAAGCTCCGCTGCTGGCGGGCTCCCTCCCCCCGT
CGCGATTTTTGGATGACTTGCCACCCCTCTCGTTGGGACCGCAGGCGTGG
TGCGACGGGCGAGTAGCAAACCGATTGCGATCATCCGCTCTACATCGGTC
CCCGGGCAGCTCCAAGATAGGTCCCTAGCCGGCGACCCAGAAGCGGGAGG
TGGCAGCGGAGGCAAAACGACCAGCAGGAGGGGGCTTCACTTTAGGGACA
GGAGTTTACAGCACGATTTCAACATCAGCGGGGCAGGAGCGCGTCATGGG
ATCGCACAGTCTCTCCCGCCTCCGCAAGCTCCGCTGCTGGCGGGCTCCCT
CCCCCCGTCGCGATTTTTGGATGACTTGCCACCCCTCTCGTTGGGACCGC
AGGCTAGCGTCGAATCGTTTACATCCGAATGCGGTGCGCTTTCGACTTCG
TTGAAGACAAACCGCTTGGCTAGCGTCGAATCGTTTACATCCGAATGCGG
TGCGCTTTCGACTTCGTTGAAGACAAACCGCTTGTACGCGGCGTCTTGCC
CGGCGAACCTCGGAGCGCATTTCGGTCGCCCACCAGGATCGAAGATCAGT
TCCATGCCTGTGCTCGAGGAGGGGTCGCCCGACGAGGAGGAAGCGAGAGA
GGGGAGACGTTCGACGGAGCCGAAGAGCATTACCGCTCTGTCTATCTTAG
AATCCTTTTCTTCCGCGGCGGGGCAGAAAACTGCCGCGCCCGCCGATGGC
TCTGCCGTGGACGCGGAATCCGTCGAAAGCGCCGACAGCGGCGCAGAAGA
GTTGCATGTCGAGGACGACGTGTTCGATCTCGAGCTCGATGGGTACGCGG
CGTCTTGCCCGGCGAACCTCGGAGCGCATTTCGGTCGCCCACCAGGATCG
AAGATCAGTTCCATGCCTGTGCTCGAGGAGGGGTCGCCCGACGAGGAGGA
AGCGAGAGAGGGGAGACGTTCGACGGAGCCGAAGAGCATTACCGCTCTGT
CTATCTTAGAATCCTTTTCTTCCGCGGCGGGGCAGAAAACTGCCGCGCCC
GCCGATGGCTCTGCCGTGGACGCGGAATCCGTCGAAAGCGCCGACAGCGG
CGCAGAAGAGTTGCATGTCGAGGACGACGTGTTCGATCTCGAGCTCGATG
GGGATCTGGAGGTGCTTTCTCTTTCCGAACGAGGCAAGGATGTGTGAGAT
CTGGAGGTGCTTTCTCTTTCCGAACGAGGCAAGGATGTGTGA
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