mRNA_P-fluviatile_contig12.1544.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1544.1 vs. uniprot
Match: D7G900_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G900_ECTSI) HSP 1 Score: 433 bits (1114), Expect = 1.870e-135 Identity = 273/535 (51.03%), Postives = 343/535 (64.11%), Query Frame = 2
Query: 773 SNDGVFGAGATS---YSIYEDRDTELDPIAPVTATLTVAFIPPEEGSEDGGAPKPCVRFFVVDDLPQNRRRGSRASVDGIPAVLMECAPAKTETELLSDISSSAAAAASAGRAPMKGSAERA-SNEQDQPLRKSSRASTMAHSKAASGPARLYD-LSPPSSKAPLEAADTVLLVGDH-PNVLKRTAAWLQKLLGEEVSLLGGISSCALAIGEQVFPG--DKARRSSQLGVPVPVAVGVALRGVYAMGVSAKGFEGVGPVFRVETTAGADGAPQARAGKLIQNVAVVSEAGADVRRSTALSIFLNEVRLCPAFGINGFNQCDMYLGLGSSPAELLETRQSSLGDQDHVEGFDEEAARGIPPVIVISASGQTIGLASDVQPGQYGRFLRTTPQLVLKDTNRTHKACKRRSARQGGVVLSSIHFVCSVRPDYVEMHG---QQQQEEQLPQPVGGEEGNAIEPRVMALHQQEIVSFCKTLKAPAAGVFCEGELGPLATLVGGIHAATAGAHLQSYTSCNAVLCWNPGSLVAKSRASSVS 2344
S+ GV+GAG + YS YE RD ELDP P T LTVA+IPPE G DGG P+P V+ F+ QN R SVDG+ V ECAPA T L+ ++ ++ A E A S+ QP+R+S RA+T+ SK AS R+Y L+PPSS PLE ADTV LV DH P ++ RTA WLQKLLGE+ +LGG ++CAL IG QVFP +K S+ + V VGVALRGV+A+ +SAKG+EGVGPVF+++TTA G PQA GKL+++V VVS G VR+STALSIF +EV C A G + + LG+ +SPAELL R S +D + +EEA G PPV V G+ + L DV PGQ+ RFLR+T +LVL+D + AC RR R+GGVVLSSI F C VR D+VE+ G QQ++E+ G +G+A+ RVMALHQQE+V F KTL APAAGVFC+ E GP+A + GIH TA + Q YTSC AVLCWNPGS+ KSRASSVS
Sbjct: 62 SDSGVYGAGVSGEGDYSTYEGRDIELDPPPPTTCVLTVAYIPPE-GGIDGGLPQPRVKTFIASHSFQNTRNDG-PSVDGVAPVFTECAPAVTFGTKLAAVNGENKPGGTSSSASCTNLTEPAGSSGPPQPVRRSIRATTVTKSKVASQ--RVYPKLTPPSSSVPLEDADTVFLVDDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQVFPDPDEKVGNHSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGKLLRDVTVVSSEGVAVRKSTALSIFQHEV--CQASGESYPEKIS--LGVSASPAELLRCRSGSGRCEDLDDEIEEEAT-GAPPVAVNWTFGEAVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRLDHVELSGRRVQQEREQXXXXXPDGGDGDAVVTRVMALHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVS 587
BLAST of mRNA_P-fluviatile_contig12.1544.1 vs. uniprot
Match: A0A6H5KTS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTS4_9PHAE) HSP 1 Score: 216 bits (551), Expect = 8.450e-59 Identity = 140/279 (50.18%), Postives = 182/279 (65.23%), Query Frame = 2
Query: 773 SNDGVFGAGAT---SYSIYEDRDTELDPIAPVTATLTVAFIPPEEGSEDGGAPKPCVRFFVVDDLPQNRRRGSRASVDGIPAVLMECAPAKTETELLSDISSSAAAAASAGRAPMKGSAERA-SNEQDQPLRKSSRASTMAHSKAASGPARLYD-LSPPSSKAPLEAADTVLLVGDH-PNVLKRTAAWLQKLLGEEVSLLGGISSCALAIGEQVFPG--DKARRSSQLGVPVPVAVGVALRGVYAMGVSAKGFEGVGPVFRVETTAGADGAPQARAGKL 1585
S+ GV+GAG + ++S YE RD ELDP P T LTVA+IPPE GS DGG P+P V+ F+ QN R SVDG+ V ECAPA T L+ ++ ++ A E A S+ QP+R+SSRA+T+A+SK AS R+Y L+PPSS PLE ADTV LVGDH P ++ RTA WLQKLLGE+ +LGG ++CAL IG Q+FP +K R S+ + V VGVALRGV+A+ +SAKG+EGVGPVF+++TTA G PQA G++
Sbjct: 49 SDSGVYGAGVSGEGNHSTYEGRDIELDPPPPTTCVLTVAYIPPEGGS-DGGLPQPRVKTFIASHNFQNTRNDG-PSVDGVAPVFTECAPAVTFGTKLAAVNGENKPGGTSSSASGTNLTEPAGSSGPPQPVRRSSRATTVANSKVASQ--RVYPKLTPPSSSVPLEDADTVFLVGDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQMFPDPEEKVRNYSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGEV 323
BLAST of mRNA_P-fluviatile_contig12.1544.1 vs. uniprot
Match: A0A6H5KRG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG6_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 8.060e-18 Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 2
Query: 2144 IVSFCKTLKAPAAGVFCEGELGPLATLVGGIHAATAGAHLQSYTSCNAVLCWNPGSLVAKSRASSVS 2344
+V F KTL APAAGVFC+ E GP+A + GIH TA + Q YTSC AVLCWNPGS KSRASSVS
Sbjct: 1 MVKFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSFGTKSRASSVS 67 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1544.1 >prot_P-fluviatile_contig12.1544.1 ID=prot_P-fluviatile_contig12.1544.1|Name=mRNA_P-fluviatile_contig12.1544.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=624bp MRLFSSPPRRKVKSQFASFRRASELCSCKFSFSCHGLFNHHPIEISRCPHback to top mRNA from alignment at P-fluviatile_contig12:2856831..2862332- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1544.1 ID=mRNA_P-fluviatile_contig12.1544.1|Name=mRNA_P-fluviatile_contig12.1544.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5502bp|location=Sequence derived from alignment at P-fluviatile_contig12:2856831..2862332- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:2856831..2862332- >mRNA_P-fluviatile_contig12.1544.1 ID=mRNA_P-fluviatile_contig12.1544.1|Name=mRNA_P-fluviatile_contig12.1544.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3744bp|location=Sequence derived from alignment at P-fluviatile_contig12:2856831..2862332- (Porterinema fluviatile SAG_2381)back to top |