mRNA_P-fluviatile_contig12.1537.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1537.1
Unique NamemRNA_P-fluviatile_contig12.1537.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2783236..2783600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.3465939-UTR-P-fluviatile_contig12:2783235..27832671622815490.3465939-UTR-P-fluviatile_contig12:2783235..2783267Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2783236..2783267 +
1693562048.272921-UTR-P-fluviatile_contig12:2783235..27832671693562048.272921-UTR-P-fluviatile_contig12:2783235..2783267Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2783236..2783267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.3635504-CDS-P-fluviatile_contig12:2783267..27836001622815490.3635504-CDS-P-fluviatile_contig12:2783267..2783600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2783268..2783600 +
1693562048.2801964-CDS-P-fluviatile_contig12:2783267..27836001693562048.2801964-CDS-P-fluviatile_contig12:2783267..2783600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2783268..2783600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1537.1prot_P-fluviatile_contig12.1537.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2783268..2783600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1537.1

>prot_P-fluviatile_contig12.1537.1 ID=prot_P-fluviatile_contig12.1537.1|Name=mRNA_P-fluviatile_contig12.1537.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MTHTQSRRRSRLRAASVFRRMSRCHMLRSFILQQPRAHTPPLRPACVSSD
TLAFARLTSTPPLSSGQGCRPLFPSKHRPVNARFTPARFHTTCIAVHTRQ
RVSSTSSFTNE
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mRNA from alignment at P-fluviatile_contig12:2783236..2783600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1537.1 ID=mRNA_P-fluviatile_contig12.1537.1|Name=mRNA_P-fluviatile_contig12.1537.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=365bp|location=Sequence derived from alignment at P-fluviatile_contig12:2783236..2783600+ (Porterinema fluviatile SAG_2381)
GACTGCTCTGCCGGCGTGTGAGTTGCTTGCTTATGACGCACACACAATCT
CGTCGTCGTTCTCGTTTACGGGCAGCCTCAGTTTTTCGCCGGATGTCTCG
TTGTCATATGCTTCGTAGTTTTATTTTGCAGCAACCTCGTGCGCACACGC
CTCCTTTGCGACCAGCCTGTGTATCATCGGACACTCTTGCGTTTGCGCGG
TTAACGAGCACGCCGCCCCTCAGCTCGGGGCAAGGCTGCCGCCCCCTATT
CCCTTCGAAGCACCGTCCGGTGAACGCCCGATTTACCCCTGCTCGTTTCC
ATACGACGTGCATAGCTGTGCATACGAGGCAACGGGTGTCGAGCACCTCC
TCGTTTACCAACGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2783236..2783600+

>mRNA_P-fluviatile_contig12.1537.1 ID=mRNA_P-fluviatile_contig12.1537.1|Name=mRNA_P-fluviatile_contig12.1537.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig12:2783236..2783600+ (Porterinema fluviatile SAG_2381)
ATGACGCACACACAATCTCGTCGTCGTTCTCGTTTACGGGCAGCCTCAGT
TTTTCGCCGGATGTCTCGTTGTCATATGCTTCGTAGTTTTATTTTGCAGC
AACCTCGTGCGCACACGCCTCCTTTGCGACCAGCCTGTGTATCATCGGAC
ACTCTTGCGTTTGCGCGGTTAACGAGCACGCCGCCCCTCAGCTCGGGGCA
AGGCTGCCGCCCCCTATTCCCTTCGAAGCACCGTCCGGTGAACGCCCGAT
TTACCCCTGCTCGTTTCCATACGACGTGCATAGCTGTGCATACGAGGCAA
CGGGTGTCGAGCACCTCCTCGTTTACCAACGAAATGACGCACACACAATC
TCGTCGTCGTTCTCGTTTACGGGCAGCCTCAGTTTTTCGCCGGATGTCTC
GTTGTCATATGCTTCGTAGTTTTATTTTGCAGCAACCTCGTGCGCACACG
CCTCCTTTGCGACCAGCCTGTGTATCATCGGACACTCTTGCGTTTGCGCG
GTTAACGAGCACGCCGCCCCTCAGCTCGGGGCAAGGCTGCCGCCCCCTAT
TCCCTTCGAAGCACCGTCCGGTGAACGCCCGATTTACCCCTGCTCGTTTC
CATACGACGTGCATAGCTGTGCATACGAGGCAACGGGTGTCGAGCACCTC
CTCGTTTACCAACGAA
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