mRNA_P-fluviatile_contig12.1534.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1534.1
Unique NamemRNA_P-fluviatile_contig12.1534.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2757516..2758177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size662
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1534.1prot_P-fluviatile_contig12.1534.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2757724..2758056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.2877018-UTR-P-fluviatile_contig12:2757515..27577231622815490.2877018-UTR-P-fluviatile_contig12:2757515..2757723Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2757516..2757723 +
1693562048.230443-UTR-P-fluviatile_contig12:2757515..27577231693562048.230443-UTR-P-fluviatile_contig12:2757515..2757723Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2757516..2757723 +
1622815490.3122768-UTR-P-fluviatile_contig12:2758056..27581771622815490.3122768-UTR-P-fluviatile_contig12:2758056..2758177Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2758057..2758177 +
1693562048.2649095-UTR-P-fluviatile_contig12:2758056..27581771693562048.2649095-UTR-P-fluviatile_contig12:2758056..2758177Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2758057..2758177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.298302-CDS-P-fluviatile_contig12:2757723..27580561622815490.298302-CDS-P-fluviatile_contig12:2757723..2758056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2757724..2758056 +
1693562048.2469368-CDS-P-fluviatile_contig12:2757723..27580561693562048.2469368-CDS-P-fluviatile_contig12:2757723..2758056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2757724..2758056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1534.1

>prot_P-fluviatile_contig12.1534.1 ID=prot_P-fluviatile_contig12.1534.1|Name=mRNA_P-fluviatile_contig12.1534.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MGGEGRSEVLIRRMSVRRGHVRGRVAPWSSSRHDSKKESALANDTFCLIV
FSVSSFLSFRLVGSCISFLCHFRFRVLRSFCGMIHRMVLLNYSDFAPTLH
LDLSQAECLH*
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mRNA from alignment at P-fluviatile_contig12:2757516..2758177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1534.1 ID=mRNA_P-fluviatile_contig12.1534.1|Name=mRNA_P-fluviatile_contig12.1534.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=662bp|location=Sequence derived from alignment at P-fluviatile_contig12:2757516..2758177+ (Porterinema fluviatile SAG_2381)
GGTGGCGCTCCGCACGAGACGCGACAGCTTTCCCATCTGTGTCACAAAGA
TGAATCCGAGAGATCGAGGGGGGAGACTGAAGCATTCGGATATGGTGACC
AAGAACATATTGCTTCCGACGAGGCGCGTAGATGTCGCATTAACGAATCC
GAGGGGAGGAAAGCGGGGGATGAAGCATGAAGCCGCCTGACCTTCGTGAG
TTGATCACATGGGGGGTGAGGGAAGAAGTGAAGTATTGATCCGCCGAATG
TCCGTGAGGCGGGGACATGTCCGCGGCAGGGTGGCGCCTTGGTCGTCGTC
TCGCCATGATAGCAAGAAAGAAAGTGCTCTTGCAAACGACACATTTTGTT
TGATTGTGTTCAGTGTTTCATCGTTTTTATCATTCCGGCTTGTTGGCTCT
TGCATTTCGTTCTTATGCCATTTTCGGTTTCGGGTATTGCGGTCATTTTG
CGGGATGATTCACAGAATGGTCTTACTGAATTATTCTGATTTTGCACCTA
CTTTGCACCTTGACCTCTCGCAGGCAGAATGCCTTCATTAATAAAGTTCA
TCCATCGACGAAGACCCCGAGCACCCAAGACTACGCTAGGTAGTAATTCG
AGGCGAGTTAGTACGGCAGGCAAGAAAACTGAGTGAAGGTCTTCGTGCTA
TCTCTCTCTCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2757516..2758177+

>mRNA_P-fluviatile_contig12.1534.1 ID=mRNA_P-fluviatile_contig12.1534.1|Name=mRNA_P-fluviatile_contig12.1534.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig12:2757516..2758177+ (Porterinema fluviatile SAG_2381)
ATGGGGGGTGAGGGAAGAAGTGAAGTATTGATCCGCCGAATGTCCGTGAG
GCGGGGACATGTCCGCGGCAGGGTGGCGCCTTGGTCGTCGTCTCGCCATG
ATAGCAAGAAAGAAAGTGCTCTTGCAAACGACACATTTTGTTTGATTGTG
TTCAGTGTTTCATCGTTTTTATCATTCCGGCTTGTTGGCTCTTGCATTTC
GTTCTTATGCCATTTTCGGTTTCGGGTATTGCGGTCATTTTGCGGGATGA
TTCACAGAATGGTCTTACTGAATTATTCTGATTTTGCACCTACTTTGCAC
CTTGACCTCTCGCAGGCAGAATGCCTTCATTAAATGGGGGGTGAGGGAAG
AAGTGAAGTATTGATCCGCCGAATGTCCGTGAGGCGGGGACATGTCCGCG
GCAGGGTGGCGCCTTGGTCGTCGTCTCGCCATGATAGCAAGAAAGAAAGT
GCTCTTGCAAACGACACATTTTGTTTGATTGTGTTCAGTGTTTCATCGTT
TTTATCATTCCGGCTTGTTGGCTCTTGCATTTCGTTCTTATGCCATTTTC
GGTTTCGGGTATTGCGGTCATTTTGCGGGATGATTCACAGAATGGTCTTA
CTGAATTATTCTGATTTTGCACCTACTTTGCACCTTGACCTCTCGCAGGC
AGAATGCCTTCATTAA
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