mRNA_P-fluviatile_contig12.1531.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1531.1
Unique NamemRNA_P-fluviatile_contig12.1531.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2731665..2732941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size367
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1531.1prot_P-fluviatile_contig12.1531.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2731665..2732836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.688002-CDS-P-fluviatile_contig12:2731664..27317061622815487.688002-CDS-P-fluviatile_contig12:2731664..2731706Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2731665..2731706 -
1693562046.422637-CDS-P-fluviatile_contig12:2731664..27317061693562046.422637-CDS-P-fluviatile_contig12:2731664..2731706Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2731665..2731706 -
1622815487.7033792-CDS-P-fluviatile_contig12:2732279..27323991622815487.7033792-CDS-P-fluviatile_contig12:2732279..2732399Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2732280..2732399 -
1693562046.433064-CDS-P-fluviatile_contig12:2732279..27323991693562046.433064-CDS-P-fluviatile_contig12:2732279..2732399Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2732280..2732399 -
1622815487.7161021-CDS-P-fluviatile_contig12:2732737..27328361622815487.7161021-CDS-P-fluviatile_contig12:2732737..2732836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2732738..2732836 -
1693562046.4488125-CDS-P-fluviatile_contig12:2732737..27328361693562046.4488125-CDS-P-fluviatile_contig12:2732737..2732836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2732738..2732836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.7276094-UTR-P-fluviatile_contig12:2732836..27329411622815487.7276094-UTR-P-fluviatile_contig12:2732836..2732941Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2732837..2732941 -
1693562046.4609652-UTR-P-fluviatile_contig12:2732836..27329411693562046.4609652-UTR-P-fluviatile_contig12:2732836..2732941Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2732837..2732941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1531.1

>prot_P-fluviatile_contig12.1531.1 ID=prot_P-fluviatile_contig12.1531.1|Name=mRNA_P-fluviatile_contig12.1531.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=87bp
MMVGVMIAAILVRSFRRQTRRRRMNEVPSEQLESFTPQLCRQAIVTGLGA
TRQELQGILPLARQALPCGVSSEIEEALAAILGFTAT
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mRNA from alignment at P-fluviatile_contig12:2731665..2732941-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1531.1 ID=mRNA_P-fluviatile_contig12.1531.1|Name=mRNA_P-fluviatile_contig12.1531.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1277bp|location=Sequence derived from alignment at P-fluviatile_contig12:2731665..2732941- (Porterinema fluviatile SAG_2381)
CGTAGTTCTCTCGCTTGGTGCTGCTTGTTGTTGATCGTCGTCCGCCGTGT
GCTGCTCGATTCTGTTCGTGTTATTTAGGGGTTCACGTGCACCTTTGCGT
GTGCCATGATGGTGGGCGTGATGATCGCGGCGATTCTCGTGCGAAGCTTC
CGCAGGCAAACACGCCGCCGCCGAATGAACGAGGTTCCGTCGGAACAGCT
CGAGGTGAAACGGCATTCAATCATCTAAGAACTCTGCTGATGCCCTGAAT
CCACGCCTCTCCTCGCCCCGCCCCCGCCCCGCCCCGCCCCGCCCCGCCCC
GCCCCGCCCCGCCGTCCACCCTGCCATTTGGGTACCACGGTTCGTTCGTC
AATGAGAGCTTGCTGCTGAGATTAGACAAAGCGGAACAGCCCCTTTCTCC
CTGTCCGTACGTGTTCGCTCGTTTGCCTCGACCAATATGATCGATGCGTG
GATGGGTTGATTGGCCCCTCATCGTCGCAAGTGTTGTCTCGTTACATCGC
ACCGTACGGTATTGCACCGCGTCGTACCGCATCGCACCGCAGAGCTTTAC
ACCGCAGCTCTGCCGGCAGGCGATCGTCACTGGCCTCGGGGCAACTCGGC
AGGAGCTACAGGGAATCTTGCCTCTCGCTCGGCAAGCACTCCCGTGCGGC
GTGAGTTCCGAGGTAGGTCCGAACAGATTGCTGCTGAAGCAAGAGAGATC
GCGCAGTAGTGCACGGAAAGAGAGAAAGGGGCGGGGAGGGAAGGAGGGGC
GAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGCAGATGAACATGTGGTAGGTATTCGTGACGAGGTCGACGCTGGTGCC
GGCGTCTGCTACTTTTGTTTTCGCATCAGCTTTCATCTGTCGTGCCACCA
ACGTGGATGGCGCCTCCTTTCTTCGACAACCAGCAATGCCAACCGCACCA
GCCTACATGTAAACCCATTGCAATCGGTCGGGTGATCGGCTGTTGAATAG
TTTATGCCGCCGGGTCGTTGGGTGACTTATTTTTGACGCACTTCTTGGTC
GTTTCATGAGCGAAACAGCTAATATATTTCGCACGTTTATCTCACGCGCT
TTGTTCCGCCCCTTCACCCCCCCCCGCTCTCCGCCCTTTTCTCGCTTATT
ATTAATATTCCTCCCCCCCCTCTCCTTTCCTTCCTTCTCTTCCTCCTCTG
TTGTTGTTTGTGTCTTCTGCTGTATTGGTCGTCAGATTGAAGAGGCCCTC
GCGGCTATTCTGGGCTTCACGGCAACG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2731665..2732941-

>mRNA_P-fluviatile_contig12.1531.1 ID=mRNA_P-fluviatile_contig12.1531.1|Name=mRNA_P-fluviatile_contig12.1531.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=522bp|location=Sequence derived from alignment at P-fluviatile_contig12:2731665..2732941- (Porterinema fluviatile SAG_2381)
ATGATGGTGGGCGTGATGATCGCGGCGATTCTCGTGCGAAGCTTCCGCAG
GCAAACACGCCGCCGCCGAATGAACGAGGTTCCGTCGGAACAGCTCGAGA
TGATGGTGGGCGTGATGATCGCGGCGATTCTCGTGCGAAGCTTCCGCAGG
CAAACACGCCGCCGCCGAATGAACGAGGTTCCGTCGGAACAGCTCGAGAG
CTTTACACCGCAGCTCTGCCGGCAGGCGATCGTCACTGGCCTCGGGGCAA
CTCGGCAGGAGCTACAGGGAATCTTGCCTCTCGCTCGGCAAGCACTCCCG
TGCGGCGTGAGTTCCGAGAGCTTTACACCGCAGCTCTGCCGGCAGGCGAT
CGTCACTGGCCTCGGGGCAACTCGGCAGGAGCTACAGGGAATCTTGCCTC
TCGCTCGGCAAGCACTCCCGTGCGGCGTGAGTTCCGAGATTGAAGAGGCC
CTCGCGGCTATTCTGGGCTTCACGGCAACGATTGAAGAGGCCCTCGCGGC
TATTCTGGGCTTCACGGCAACG
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