mRNA_P-fluviatile_contig12.1530.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1530.1
Unique NamemRNA_P-fluviatile_contig12.1530.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2725203..2726553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size468
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1530.1prot_P-fluviatile_contig12.1530.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2725205..2726553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.6071105-CDS-P-fluviatile_contig12:2725204..27253001622815487.6071105-CDS-P-fluviatile_contig12:2725204..2725300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2725205..2725300 -
1693562046.3917868-CDS-P-fluviatile_contig12:2725204..27253001693562046.3917868-CDS-P-fluviatile_contig12:2725204..2725300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2725205..2725300 -
1622815487.6210318-CDS-P-fluviatile_contig12:2725666..27259301622815487.6210318-CDS-P-fluviatile_contig12:2725666..2725930Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2725667..2725930 -
1693562046.3995054-CDS-P-fluviatile_contig12:2725666..27259301693562046.3995054-CDS-P-fluviatile_contig12:2725666..2725930Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2725667..2725930 -
1622815487.635249-CDS-P-fluviatile_contig12:2726448..27265531622815487.635249-CDS-P-fluviatile_contig12:2726448..2726553Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2726449..2726553 -
1693562046.4067013-CDS-P-fluviatile_contig12:2726448..27265531693562046.4067013-CDS-P-fluviatile_contig12:2726448..2726553Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2726449..2726553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1530.1

>prot_P-fluviatile_contig12.1530.1 ID=prot_P-fluviatile_contig12.1530.1|Name=mRNA_P-fluviatile_contig12.1530.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=155bp
DGGDGESEKGGVRRRGRGHLTAGRMRMDDQAGIQLSEQAERRVPRRQTGW
RPSHDFRRPGALEEDGGVKEQWNGIWSPSCGGSGSGRGGGDGDRNLGGNR
GGGGGEHVAQRARRASSSVVAREACPAAARQPQLQPQSQQQQQQQHRSAP
TARPS
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mRNA from alignment at P-fluviatile_contig12:2725203..2726553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1530.1 ID=mRNA_P-fluviatile_contig12.1530.1|Name=mRNA_P-fluviatile_contig12.1530.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1351bp|location=Sequence derived from alignment at P-fluviatile_contig12:2725203..2726553- (Porterinema fluviatile SAG_2381)
GACGGCGGTGACGGGGAGAGCGAGAAGGGTGGAGTCCGAAGGCGCGGCAG
AGGGCATCTCACCGCGGGGAGGATGAGGATGGACGATCAGGCGGGGATCC
AGCTGGTGGGTTTTGACCCGGAAAAGGAGGGGGGGGAAAGCGAGGGTTCG
TTTGCTGTTGGGCGACACGAGGCCCTGTCGCCGTCCCATGCCGTATCACC
TAGATTGGCGCCCCTTTCGCGTCGACCACAAAATCATCGTTCAGCGCTAC
ACTCAGGAAGGATTTTGCGTTGGACGGTACTCACTGTACAGCAGTGTTCT
TGTTGTTTGTAGGAAGAATTTTCGCCCACTCTATCGTGTACTATCTGCCG
CCGTGCTTTGGTTCTGTCTTTTGTTTTACGGGTCGCTGCTGCCGCCGCGA
ACGACTCGTGAGAAAAGATCGGGATGCGGCCTGCCGCCTCGTTGTTATTT
TGGATGCTGCTCTCGCTCTGTTCTTCTTCAGTTGTATCGGGTGGGTTTTT
CGGCCATCGAATTCCCAGAGGGCGTGACGCTTGTCCGTTGCTGCGCCTGC
GCCATCAAAATGATCTTCGTTCCTGTATTGTTGTAACCGCGTGTGTGCTC
CTCTACTCATCCCCGCGATGCAGTCGGAGCAGGCGGAACGGAGGGTGCCA
CGGAGGCAGACGGGCTGGCGACCCAGTCACGACTTCCGGCGGCCTGGCGC
CCTGGAGGAGGATGGTGGAGTGAAGGAGCAATGGAACGGCATCTGGTCTC
CGTCGTGTGGTGGCAGCGGTAGCGGCAGGGGCGGTGGCGATGGCGATAGA
AACCTCGGCGGCAACCGCGGCGGTGGCGGAGGCGAACACGTGGCGCAGAG
GGCCCGGCGAGCAAGCTCGTCTGTTGTTGCGAGGGAGGTACGTCAAAAAC
CGCTATTAATGGCGGATATTGATGATGTTGCGGTTGTTCTCCTCGTTGTT
CATGGGTTCGAGGTGGTCATTGTCGGGGTGCGGGAGTTTCTTCATTTTTG
CGGCAGTAGTCGAGGCGGTTAATAACGTAATCTGTTCGCTCGTCAAAATA
CTTGATGCAGTCAACCACGTACTTACTGTGGTGAGTTTTCCCCGCCTGTA
TTGCAATATGTTTCCCTTCATATCTTCGACCCGACCCCTCCCCAGTCATC
TCATTGTCTTTCTAAAATTGAAACATGAAGTCCCCCTCCCCTGCCCAACC
GCACCGTCCTTTTTTTTCGACGTGTTTGTGCGCCCTCTCTCTCCTCTCCC
AAGGCTTGTCCTGCTGCAGCACGGCAGCCGCAGCTGCAGCCGCAGTCGCA
GCAGCAGCAGCAGCAGCAGCACAGGAGCGCGCCCACCGCCCGTCCCAGCA
C
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2725203..2726553-

>mRNA_P-fluviatile_contig12.1530.1 ID=mRNA_P-fluviatile_contig12.1530.1|Name=mRNA_P-fluviatile_contig12.1530.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=930bp|location=Sequence derived from alignment at P-fluviatile_contig12:2725203..2726553- (Porterinema fluviatile SAG_2381)
GACGGCGGTGACGGGGAGAGCGAGAAGGGTGGAGTCCGAAGGCGCGGCAG
AGGGCATCTCACCGCGGGGAGGATGAGGATGGACGATCAGGCGGGGATCC
AGCTGGACGGCGGTGACGGGGAGAGCGAGAAGGGTGGAGTCCGAAGGCGC
GGCAGAGGGCATCTCACCGCGGGGAGGATGAGGATGGACGATCAGGCGGG
GATCCAGCTGTCGGAGCAGGCGGAACGGAGGGTGCCACGGAGGCAGACGG
GCTGGCGACCCAGTCACGACTTCCGGCGGCCTGGCGCCCTGGAGGAGGAT
GGTGGAGTGAAGGAGCAATGGAACGGCATCTGGTCTCCGTCGTGTGGTGG
CAGCGGTAGCGGCAGGGGCGGTGGCGATGGCGATAGAAACCTCGGCGGCA
ACCGCGGCGGTGGCGGAGGCGAACACGTGGCGCAGAGGGCCCGGCGAGCA
AGCTCGTCTGTTGTTGCGAGGGAGTCGGAGCAGGCGGAACGGAGGGTGCC
ACGGAGGCAGACGGGCTGGCGACCCAGTCACGACTTCCGGCGGCCTGGCG
CCCTGGAGGAGGATGGTGGAGTGAAGGAGCAATGGAACGGCATCTGGTCT
CCGTCGTGTGGTGGCAGCGGTAGCGGCAGGGGCGGTGGCGATGGCGATAG
AAACCTCGGCGGCAACCGCGGCGGTGGCGGAGGCGAACACGTGGCGCAGA
GGGCCCGGCGAGCAAGCTCGTCTGTTGTTGCGAGGGAGGCTTGTCCTGCT
GCAGCACGGCAGCCGCAGCTGCAGCCGCAGTCGCAGCAGCAGCAGCAGCA
GCAGCACAGGAGCGCGCCCACCGCCCGTCCCAGCGCTTGTCCTGCTGCAG
CACGGCAGCCGCAGCTGCAGCCGCAGTCGCAGCAGCAGCAGCAGCAGCAG
CACAGGAGCGCGCCCACCGCCCGTCCCAGC
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