mRNA_P-fluviatile_contig12.1519.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1519.1
Unique NamemRNA_P-fluviatile_contig12.1519.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1519.1 vs. uniprot
Match: D8LPX0_ECTSI (Cation chanel protein, possibly calcium-activated BK potassium channel, alpha subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX0_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.780e-20
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = -2 
Query:    3 GHVVLVTPTLAHVATLVEALEVPQVSIMGFVVVCPLYDWNQERDEKEMRRLRAFPQ 170
            G++VLVTPTLA V+TLVEA E PQV  MGFVVVCPLYDWNQERD++E+RRLR FPQ
Sbjct:  676 GYIVLVTPTLAQVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEEIRRLREFPQ 731
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BLAST of mRNA_P-fluviatile_contig12.1519.1 vs. uniprot
Match: A0A6H5L688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L688_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.310e-19
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = -2 
Query:    3 GHVVLVTPTLAHVATLVEALEVPQVSIMGFVVVCPLYDWNQERDEKEMRRLRAFPQ 170
            G++VLVTPTLA V+ LVEA E PQV  MGFVVVCPLYDWNQERD++E+RRLRAFPQ
Sbjct:  663 GYMVLVTPTLAQVSMLVEAFEAPQVPKMGFVVVCPLYDWNQERDQEEIRRLRAFPQ 718
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BLAST of mRNA_P-fluviatile_contig12.1519.1 vs. uniprot
Match: A0A835YS46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS46_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.560e-7
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = -2 
Query:   18 DIKAKGHVVLVTPTLAHVATLVEALEVPQVSIMGFVVVCPLYDWNQERDEKEMRRL 185
            D+    H+V+VTPTLA +ATL E L  PQ      VVVCPL DWN+E+D+ E+ +L
Sbjct:  715 DLADGSHIVVVTPTLADMATLAELLLSPQAFQRELVVVCPLPDWNREQDDAEVLKL 770
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPX0_ECTSI2.780e-2078.57Cation chanel protein, possibly calcium-activated ... [more]
A0A6H5L688_9PHAE1.310e-1978.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS46_9STRA1.560e-751.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2610658..2611108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.2159884-CDS-P-fluviatile_contig12:2610657..26111071622815490.2159884-CDS-P-fluviatile_contig12:2610657..2611107Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2610658..2611107 +
1693562048.2103434-CDS-P-fluviatile_contig12:2610657..26111071693562048.2103434-CDS-P-fluviatile_contig12:2610657..2611107Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2610658..2611107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1519.1prot_P-fluviatile_contig12.1519.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2610658..2611107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1519.1

>prot_P-fluviatile_contig12.1519.1 ID=prot_P-fluviatile_contig12.1519.1|Name=mRNA_P-fluviatile_contig12.1519.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=150bp
TCGNALKRRISFSSRSWFQSYSGHTTTKPMIDTCGTSNASTSVATCAKVG
VTRTTCPFALMSSPVPPAPQLMTLLFCWPPPLSSLRPAGELCAGPPPDVS
APSGPLFPFPGGDGDSGSRTKNGDGLSLPSSPLPRPLAVPPACRPPTPFP
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mRNA from alignment at P-fluviatile_contig12:2610658..2611108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1519.1 ID=mRNA_P-fluviatile_contig12.1519.1|Name=mRNA_P-fluviatile_contig12.1519.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=451bp|location=Sequence derived from alignment at P-fluviatile_contig12:2610658..2611108+ (Porterinema fluviatile SAG_2381)
ACCTGTGGAAATGCCCTCAAACGCCGCATTTCCTTCTCGTCCCGCTCTTG
GTTCCAGTCGTACAGCGGGCACACGACCACAAAGCCCATGATCGATACCT
GCGGGACCTCCAATGCCTCCACTAGCGTTGCAACATGCGCCAAGGTGGGA
GTCACAAGAACGACGTGTCCCTTCGCTTTAATGTCATCGCCAGTGCCGCC
GGCACCGCAGCTCATGACACTGCTCTTTTGTTGGCCTCCTCCCTTGTCTT
CTCTTCGCCCTGCAGGAGAACTGTGCGCCGGCCCGCCGCCCGATGTTTCC
GCACCGTCTGGGCCGCTTTTTCCTTTCCCGGGCGGCGACGGCGACAGCGG
ATCAAGGACCAAAAACGGTGATGGCTTAAGCCTTCCTTCATCTCCCCTTC
CTCGGCCTCTGGCTGTTCCTCCTGCTTGTCGTCCGCCGACACCGTTCCCG
C
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2610658..2611108+

>mRNA_P-fluviatile_contig12.1519.1 ID=mRNA_P-fluviatile_contig12.1519.1|Name=mRNA_P-fluviatile_contig12.1519.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=900bp|location=Sequence derived from alignment at P-fluviatile_contig12:2610658..2611108+ (Porterinema fluviatile SAG_2381)
ACCTGTGGAAATGCCCTCAAACGCCGCATTTCCTTCTCGTCCCGCTCTTG
GTTCCAGTCGTACAGCGGGCACACGACCACAAAGCCCATGATCGATACCT
GCGGGACCTCCAATGCCTCCACTAGCGTTGCAACATGCGCCAAGGTGGGA
GTCACAAGAACGACGTGTCCCTTCGCTTTAATGTCATCGCCAGTGCCGCC
GGCACCGCAGCTCATGACACTGCTCTTTTGTTGGCCTCCTCCCTTGTCTT
CTCTTCGCCCTGCAGGAGAACTGTGCGCCGGCCCGCCGCCCGATGTTTCC
GCACCGTCTGGGCCGCTTTTTCCTTTCCCGGGCGGCGACGGCGACAGCGG
ATCAAGGACCAAAAACGGTGATGGCTTAAGCCTTCCTTCATCTCCCCTTC
CTCGGCCTCTGGCTGTTCCTCCTGCTTGTCGTCCGCCGACACCGTTCCCG
ACCTGTGGAAATGCCCTCAAACGCCGCATTTCCTTCTCGTCCCGCTCTTG
GTTCCAGTCGTACAGCGGGCACACGACCACAAAGCCCATGATCGATACCT
GCGGGACCTCCAATGCCTCCACTAGCGTTGCAACATGCGCCAAGGTGGGA
GTCACAAGAACGACGTGTCCCTTCGCTTTAATGTCATCGCCAGTGCCGCC
GGCACCGCAGCTCATGACACTGCTCTTTTGTTGGCCTCCTCCCTTGTCTT
CTCTTCGCCCTGCAGGAGAACTGTGCGCCGGCCCGCCGCCCGATGTTTCC
GCACCGTCTGGGCCGCTTTTTCCTTTCCCGGGCGGCGACGGCGACAGCGG
ATCAAGGACCAAAAACGGTGATGGCTTAAGCCTTCCTTCATCTCCCCTTC
CTCGGCCTCTGGCTGTTCCTCCTGCTTGTCGTCCGCCGACACCGTTCCCG
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