mRNA_P-fluviatile_contig12.1511.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1511.1
Unique NamemRNA_P-fluviatile_contig12.1511.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1511.1 vs. uniprot
Match: A0A6H5JTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA5_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 1.630e-135
Identity = 228/337 (67.66%), Postives = 267/337 (79.23%), Query Frame = 1 
Query:  115 DTFRALKASEFPPTLKLEGLPSEDVPEIMAQYRTHIRLSLPENTSDDIIDRRAIKNLRLITKGAAAQSLDLILSSHLEWRSEQQVAAIRARGEQVTISPPQTWKQWVNAMTTLFAPANRIALLAREAMTLQAKPNESVDLFSIRVSRAYSRLLAEAERTAPPNMSAHEHAFEKALIASFENGLPPDIRVEMIREDAPQTFMTSKTRARKHEANKLRSATSQSAASISSLLDSTLQPQLKLHTGELENRINQLEKLVNTQGDTHVSSAA-RGRSNSRGPTIQKRGPSQPQIHRNQKAKVAFTQDTKSSGGTMDGGSGSKGGVECTYPGCAGKSKRFTH 1122
            D  RALKAS FPP+LKLEGLPSEDVPEIMAQYRTHI L+LPE TS+  +DRRAIKNLRLITKGAAA SLDLILS+ LEWR EQQ+AA+RARGE +TISPP++WK WV AMTTLFAPANRIALLAREAMTLQAKPNE+VD+F++RVSRAYSRLLAEAERTAP N+SAHEHAF KA+IASFENGLPP+IRVEM+REDA QTFM SKTRARKHEAN+LRS  SQ++ S+S++ D    PQL   T   E+R+  LE+++  Q    VSSAA RGRS SR    ++  PS  +  ++ K KVAF++DTK+ G      +       CTYPGCAG+ K  TH
Sbjct:  177 DDGRALKASMFPPSLKLEGLPSEDVPEIMAQYRTHISLALPEGTSEADLDRRAIKNLRLITKGAAATSLDLILSNSLEWRPEQQIAALRARGETITISPPKSWKDWVTAMTTLFAPANRIALLAREAMTLQAKPNETVDVFALRVSRAYSRLLAEAERTAPANVSAHEHAFSKAMIASFENGLPPEIRVEMVREDASQTFMASKTRARKHEANRLRSP-SQTSTSVSAMYD-VHDPQLMTQTDNHESRLQALERMLEDQTSRTVSSAADRGRSTSRA-RAKRHAPSADRT-KSPKQKVAFSKDTKADGTGGGVMTNKDNEPPCTYPGCAGQDKANTH 509
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BLAST of mRNA_P-fluviatile_contig12.1511.1 vs. uniprot
Match: A0A6H5KID2_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KID2_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 3.490e-117
Identity = 217/375 (57.87%), Postives = 220/375 (58.67%), Query Frame = 1 
Query:    1 QPQPNVAPLPQHSGDVSQQQQQNNLAISTHEQRTRATQDTFRALKASEFPPTLKLEGLPSEDVPEIMAQYRTHIRLSLPENTSDDIIDRRAIKNLRLITKGAAAQSLDLILSSHLEWRSEQQVAAIRARGEQVTISPPQTWKQWVNAMTTLFAPANRIALLAREAMTLQAKPNESVDLFSIRVSRAYSRLLAEAERTAPPNMSAHEHAFEKALIASFENGLPPDIRVEMIREDAPQTFMTSKTRARKHEANKLRSATSQSAASISSLLDSTLQPQLKLHTGELENRINQLEKLVNTQGDTHVSSAARGRSNSRGPTIQKRGPSQPQIHRNQKAKVAFTQDTKSSGGTMDGGSGSKGGVECTYPGCAGKSKRFTHS 1125
            QPQPNVAPLPQHSGDVSQQQQQNNLAI THEQRTRATQDTFRALKASEFPPTLKLEGLPSEDVPEIMAQYRTHIRLSLPENTSDDIIDRRAIKNLRLITKGAAAQSLDLILSSHLEWRSEQQ                                                                                                                                                         LKLHTGELENR+NQLEKL+NTQGDTHVSSAARGRSNSRGPT QKRGPSQPQIHRNQKAKVAFTQDTKSSGGT+DGGSGSKGGVECTYPGCAGKSKRFTHS
Sbjct:  212 QPQPNVAPLPQHSGDVSQQQQQNNLAIPTHEQRTRATQDTFRALKASEFPPTLKLEGLPSEDVPEIMAQYRTHIRLSLPENTSDDIIDRRAIKNLRLITKGAAAQSLDLILSSHLEWRSEQQ---------------------------------------------------------------------------------------------------------------------------------------------------------LKLHTGELENRVNQLEKLINTQGDTHVSSAARGRSNSRGPTTQKRGPSQPQIHRNQKAKVAFTQDTKSSGGTVDGGSGSKGGVECTYPGCAGKSKRFTHS 433
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BLAST of mRNA_P-fluviatile_contig12.1511.1 vs. uniprot
Match: A0A6H5LJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJD3_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 5.340e-57
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1 
Query:  130 LKASEFPPTLKLEGLPSEDVPEIMAQYRTHIRLSLPENTSDDIIDRRAIKNLRLITKGAAAQSLDLILSSHLEWRSEQQVAAIRARGEQVTISPPQTWKQWVNAMTTLFAPANRIALLAREAMTLQAKPNESVDLFSIRVSRAYSRLLAEAERTAP 597
            LKA++ PP LKLEGLP EDVPE MA YR HI L   +N S   ID RAI++L L  +G AAQSL L+LSS LEWR   Q+ A+RARGE + ISPP+TWK+WV A TT FAPANRIALLAR+ MTL+AK +ESVD F++RV+R Y+RLLAEAERTAP
Sbjct:  279 LKATDLPPDLKLEGLPHEDVPEKMALYRAHIGLLSADNVSQSTIDHRAIRHLPLFVRGTAAQSLSLMLSSSLEWRPPAQLHALRARGEAIRISPPKTWKEWVTAFTTSFAPANRIALLARDVMTLEAKTSESVDEFALRVTRTYARLLAEAERTAP 434
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BLAST of mRNA_P-fluviatile_contig12.1511.1 vs. uniprot
Match: A0A6H5JKS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS4_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.740e-25
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:  217 HIRLSLPENTSDDIIDRRAIKNLRLITKGAAAQSLDLILSSHLEWRSEQQVAAIRARGEQV 399
            H RLSLPENTSDDII RRAIKNLRLITKGAAAQ+LD++LSS LEWRSEQQVAA+RARGEQV
Sbjct:   11 HTRLSLPENTSDDIIHRRAIKNLRLITKGAAAQTLDVMLSSSLEWRSEQQVAAVRARGEQV 71
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BLAST of mRNA_P-fluviatile_contig12.1511.1 vs. uniprot
Match: A0A6H5L1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.160e-19
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:  199 MAQYRTHIRLSLPENTSDDIIDRRAIKNLRLITKGAAAQSLDLILSSHLE 348
            M QYRTHIRLSLPENT+DDIIDRRAIKNLRLITKGAAAQ+LDLI SS LE
Sbjct:    1 MGQYRTHIRLSLPENTADDIIDRRAIKNLRLITKGAAAQTLDLIQSSSLE 50
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BLAST of mRNA_P-fluviatile_contig12.1511.1 vs. uniprot
Match: A0A6H5J4Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4Z9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.760e-12
Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = -2 
Query:  633 RFSSSPV*SFSCGCSVESRREDIEAAD*DVAERSLFASCLRARVLEVINVCGASSRIISTLISGGKPFSNDAMSA 857
            R S   V   SCG       ED +  D   AERSLFASCLRAR  + IN C ASS +IST ISG  PFSNDAMSA
Sbjct:   12 RLSRRTVAFSSCGSWEIWYIEDTDVEDEGEAERSLFASCLRARAFDAINDCDASSLVISTRISGFNPFSNDAMSA 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JTA5_9PHAE1.630e-13567.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KID2_9PHAE3.490e-11757.87Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJD3_9PHAE5.340e-5766.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS4_9PHAE6.740e-2588.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Q8_9PHAE8.160e-1990.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4Z9_9PHAE7.760e-1257.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2491696..2492821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1128
Cds size1125
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.1785686-CDS-P-fluviatile_contig12:2491695..24928201622815490.1785686-CDS-P-fluviatile_contig12:2491695..2492820Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2491696..2492820 +
1693562048.1973772-CDS-P-fluviatile_contig12:2491695..24928201693562048.1973772-CDS-P-fluviatile_contig12:2491695..2492820Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2491696..2492820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1511.1prot_P-fluviatile_contig12.1511.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2491696..2492820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1511.1

>prot_P-fluviatile_contig12.1511.1 ID=prot_P-fluviatile_contig12.1511.1|Name=mRNA_P-fluviatile_contig12.1511.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=375bp
QPQPNVAPLPQHSGDVSQQQQQNNLAISTHEQRTRATQDTFRALKASEFP
PTLKLEGLPSEDVPEIMAQYRTHIRLSLPENTSDDIIDRRAIKNLRLITK
GAAAQSLDLILSSHLEWRSEQQVAAIRARGEQVTISPPQTWKQWVNAMTT
LFAPANRIALLAREAMTLQAKPNESVDLFSIRVSRAYSRLLAEAERTAPP
NMSAHEHAFEKALIASFENGLPPDIRVEMIREDAPQTFMTSKTRARKHEA
NKLRSATSQSAASISSLLDSTLQPQLKLHTGELENRINQLEKLVNTQGDT
HVSSAARGRSNSRGPTIQKRGPSQPQIHRNQKAKVAFTQDTKSSGGTMDG
GSGSKGGVECTYPGCAGKSKRFTHS
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mRNA from alignment at P-fluviatile_contig12:2491696..2492821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1511.1 ID=mRNA_P-fluviatile_contig12.1511.1|Name=mRNA_P-fluviatile_contig12.1511.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1126bp|location=Sequence derived from alignment at P-fluviatile_contig12:2491696..2492821+ (Porterinema fluviatile SAG_2381)
CAACCGCAGCCGAATGTAGCACCTCTACCCCAGCACAGTGGAGACGTGTC
ACAACAGCAGCAGCAGAACAATCTAGCCATTTCCACACACGAGCAACGCA
CTCGCGCAACTCAAGACACTTTCAGAGCTCTCAAGGCTTCCGAGTTTCCG
CCAACTCTGAAACTTGAGGGTCTCCCATCGGAAGATGTACCCGAGATCAT
GGCACAGTACCGCACGCACATTCGCCTCTCGCTGCCCGAAAACACCTCGG
ACGACATCATCGACCGTAGAGCTATTAAGAACTTACGCCTCATCACGAAA
GGCGCCGCTGCGCAATCGCTTGACCTCATTCTGAGTTCTCACTTGGAGTG
GCGGTCGGAACAGCAGGTAGCCGCAATTCGTGCACGGGGTGAACAAGTTA
CCATCTCTCCTCCTCAAACCTGGAAACAATGGGTTAACGCTATGACTACT
CTCTTCGCACCCGCTAACAGAATCGCGCTTCTCGCACGCGAAGCCATGAC
TCTCCAAGCGAAACCTAACGAGTCTGTCGACCTGTTTTCTATTCGAGTCT
CACGCGCATACTCTAGACTTCTCGCCGAAGCCGAACGGACTGCACCACCG
AATATGTCTGCACACGAACACGCATTTGAGAAAGCACTCATTGCATCGTT
TGAGAACGGTTTGCCGCCGGATATCAGGGTAGAGATGATTCGAGAAGACG
CACCGCAAACGTTTATGACTTCCAAAACGCGCGCCCGCAAACACGAAGCG
AACAAACTGCGCTCTGCAACGTCTCAATCAGCCGCCTCGATATCTTCCCT
CCTCGATTCCACACTACAACCGCAGCTAAAACTTCACACGGGTGAACTCG
AGAATCGGATCAACCAGCTCGAGAAACTTGTCAACACGCAAGGAGACACC
CACGTCTCCAGTGCAGCCCGCGGCCGTAGTAACAGTCGGGGACCAACCAT
CCAGAAGCGGGGTCCTTCCCAGCCCCAAATCCACCGGAACCAGAAGGCAA
AGGTGGCGTTCACCCAGGACACAAAGTCCTCGGGCGGAACAATGGATGGT
GGTAGCGGTAGCAAGGGGGGTGTTGAATGCACTTACCCGGGCTGCGCAGG
GAAGTCGAAACGGTTCACGCATTCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2491696..2492821+

>mRNA_P-fluviatile_contig12.1511.1 ID=mRNA_P-fluviatile_contig12.1511.1|Name=mRNA_P-fluviatile_contig12.1511.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2250bp|location=Sequence derived from alignment at P-fluviatile_contig12:2491696..2492821+ (Porterinema fluviatile SAG_2381)
CAACCGCAGCCGAATGTAGCACCTCTACCCCAGCACAGTGGAGACGTGTC
ACAACAGCAGCAGCAGAACAATCTAGCCATTTCCACACACGAGCAACGCA
CTCGCGCAACTCAAGACACTTTCAGAGCTCTCAAGGCTTCCGAGTTTCCG
CCAACTCTGAAACTTGAGGGTCTCCCATCGGAAGATGTACCCGAGATCAT
GGCACAGTACCGCACGCACATTCGCCTCTCGCTGCCCGAAAACACCTCGG
ACGACATCATCGACCGTAGAGCTATTAAGAACTTACGCCTCATCACGAAA
GGCGCCGCTGCGCAATCGCTTGACCTCATTCTGAGTTCTCACTTGGAGTG
GCGGTCGGAACAGCAGGTAGCCGCAATTCGTGCACGGGGTGAACAAGTTA
CCATCTCTCCTCCTCAAACCTGGAAACAATGGGTTAACGCTATGACTACT
CTCTTCGCACCCGCTAACAGAATCGCGCTTCTCGCACGCGAAGCCATGAC
TCTCCAAGCGAAACCTAACGAGTCTGTCGACCTGTTTTCTATTCGAGTCT
CACGCGCATACTCTAGACTTCTCGCCGAAGCCGAACGGACTGCACCACCG
AATATGTCTGCACACGAACACGCATTTGAGAAAGCACTCATTGCATCGTT
TGAGAACGGTTTGCCGCCGGATATCAGGGTAGAGATGATTCGAGAAGACG
CACCGCAAACGTTTATGACTTCCAAAACGCGCGCCCGCAAACACGAAGCG
AACAAACTGCGCTCTGCAACGTCTCAATCAGCCGCCTCGATATCTTCCCT
CCTCGATTCCACACTACAACCGCAGCTAAAACTTCACACGGGTGAACTCG
AGAATCGGATCAACCAGCTCGAGAAACTTGTCAACACGCAAGGAGACACC
CACGTCTCCAGTGCAGCCCGCGGCCGTAGTAACAGTCGGGGACCAACCAT
CCAGAAGCGGGGTCCTTCCCAGCCCCAAATCCACCGGAACCAGAAGGCAA
AGGTGGCGTTCACCCAGGACACAAAGTCCTCGGGCGGAACAATGGATGGT
GGTAGCGGTAGCAAGGGGGGTGTTGAATGCACTTACCCGGGCTGCGCAGG
GAAGTCGAAACGGTTCACGCATTCACAACCGCAGCCGAATGTAGCACCTC
TACCCCAGCACAGTGGAGACGTGTCACAACAGCAGCAGCAGAACAATCTA
GCCATTTCCACACACGAGCAACGCACTCGCGCAACTCAAGACACTTTCAG
AGCTCTCAAGGCTTCCGAGTTTCCGCCAACTCTGAAACTTGAGGGTCTCC
CATCGGAAGATGTACCCGAGATCATGGCACAGTACCGCACGCACATTCGC
CTCTCGCTGCCCGAAAACACCTCGGACGACATCATCGACCGTAGAGCTAT
TAAGAACTTACGCCTCATCACGAAAGGCGCCGCTGCGCAATCGCTTGACC
TCATTCTGAGTTCTCACTTGGAGTGGCGGTCGGAACAGCAGGTAGCCGCA
ATTCGTGCACGGGGTGAACAAGTTACCATCTCTCCTCCTCAAACCTGGAA
ACAATGGGTTAACGCTATGACTACTCTCTTCGCACCCGCTAACAGAATCG
CGCTTCTCGCACGCGAAGCCATGACTCTCCAAGCGAAACCTAACGAGTCT
GTCGACCTGTTTTCTATTCGAGTCTCACGCGCATACTCTAGACTTCTCGC
CGAAGCCGAACGGACTGCACCACCGAATATGTCTGCACACGAACACGCAT
TTGAGAAAGCACTCATTGCATCGTTTGAGAACGGTTTGCCGCCGGATATC
AGGGTAGAGATGATTCGAGAAGACGCACCGCAAACGTTTATGACTTCCAA
AACGCGCGCCCGCAAACACGAAGCGAACAAACTGCGCTCTGCAACGTCTC
AATCAGCCGCCTCGATATCTTCCCTCCTCGATTCCACACTACAACCGCAG
CTAAAACTTCACACGGGTGAACTCGAGAATCGGATCAACCAGCTCGAGAA
ACTTGTCAACACGCAAGGAGACACCCACGTCTCCAGTGCAGCCCGCGGCC
GTAGTAACAGTCGGGGACCAACCATCCAGAAGCGGGGTCCTTCCCAGCCC
CAAATCCACCGGAACCAGAAGGCAAAGGTGGCGTTCACCCAGGACACAAA
GTCCTCGGGCGGAACAATGGATGGTGGTAGCGGTAGCAAGGGGGGTGTTG
AATGCACTTACCCGGGCTGCGCAGGGAAGTCGAAACGGTTCACGCATTCA
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