mRNA_P-fluviatile_contig12.1510.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1510.1
Unique NamemRNA_P-fluviatile_contig12.1510.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1510.1 vs. uniprot
Match: A0A6H5JT66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT66_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.860e-17
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:  130 LRPPRTTPNPVPQ-QSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 303
            L+ P   P P P  QSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS
Sbjct:   26 LKTPSHNPKPSPPLQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 84
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BLAST of mRNA_P-fluviatile_contig12.1510.1 vs. uniprot
Match: A0A6H5JDC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.210e-16
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:  130 LRPPRTTPNPVPQ-QSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 303
            L+ P   P P P  QSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS
Sbjct:   26 LKTPSHNPKPSPPLQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 84
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BLAST of mRNA_P-fluviatile_contig12.1510.1 vs. uniprot
Match: A0A6H5KD06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD06_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.030e-16
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:  151 PNPVPQQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 303
            P+P PQ STQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS
Sbjct:  135 PSPPPQ-STQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 184
[Close]
BLAST of mRNA_P-fluviatile_contig12.1510.1 vs. uniprot
Match: A0A6H5KID2_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KID2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-15
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:  130 LRPPRTTPNPVPQ-QSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 303
            L+ P   P P P  QSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS
Sbjct:   26 LKTPSHNPKPSPPLQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGS 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JT66_9PHAE3.860e-1784.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JDC7_9PHAE1.210e-1684.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD06_9PHAE3.030e-1694.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KID2_9PHAE1.240e-1584.75Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2490915..2491232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.141235-CDS-P-fluviatile_contig12:2490914..24912321622815490.141235-CDS-P-fluviatile_contig12:2490914..2491232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2490915..2491232 +
1693562048.1799328-CDS-P-fluviatile_contig12:2490914..24912321693562048.1799328-CDS-P-fluviatile_contig12:2490914..2491232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2490915..2491232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1510.1prot_P-fluviatile_contig12.1510.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2490915..2491232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1510.1

>prot_P-fluviatile_contig12.1510.1 ID=prot_P-fluviatile_contig12.1510.1|Name=mRNA_P-fluviatile_contig12.1510.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
NEERFLRVCCCCFTHFSTWATRTRETKKPARTRRQARTPVTALLRPPRTT
PNPVPQQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGG
SSSNGG
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mRNA from alignment at P-fluviatile_contig12:2490915..2491232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1510.1 ID=mRNA_P-fluviatile_contig12.1510.1|Name=mRNA_P-fluviatile_contig12.1510.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=318bp|location=Sequence derived from alignment at P-fluviatile_contig12:2490915..2491232+ (Porterinema fluviatile SAG_2381)
AACGAAGAGCGGTTTCTGCGTGTCTGTTGCTGTTGTTTCACCCATTTTTC
AACATGGGCAACAAGAACAAGAGAGACAAAAAAACCGGCTCGAACTCGCA
GGCAGGCACGGACGCCGGTAACGGCGCTCTTAAGACCCCCTCGCACAACC
CCAAACCCAGTTCCGCAGCAGTCTACACAGCAGTCTGTCAAGAAACCGTC
CACCAACGGTAAACAGCCCCAGCGGCTTGCCACTGGTGACGCTTCTCCCA
GCTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAACTGGGAAGGGTGGC
AGCTCCAGCAATGGAGGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2490915..2491232+

>mRNA_P-fluviatile_contig12.1510.1 ID=mRNA_P-fluviatile_contig12.1510.1|Name=mRNA_P-fluviatile_contig12.1510.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig12:2490915..2491232+ (Porterinema fluviatile SAG_2381)
AACGAAGAGCGGTTTCTGCGTGTCTGTTGCTGTTGTTTCACCCATTTTTC
AACATGGGCAACAAGAACAAGAGAGACAAAAAAACCGGCTCGAACTCGCA
GGCAGGCACGGACGCCGGTAACGGCGCTCTTAAGACCCCCTCGCACAACC
CCAAACCCAGTTCCGCAGCAGTCTACACAGCAGTCTGTCAAGAAACCGTC
CACCAACGGTAAACAGCCCCAGCGGCTTGCCACTGGTGACGCTTCTCCCA
GCTCTAAAGACTACGCTGGCGCCGCCCGCAACGGAACTGGGAAGGGTGGC
AGCTCCAGCAATGGAGGTAACGAAGAGCGGTTTCTGCGTGTCTGTTGCTG
TTGTTTCACCCATTTTTCAACATGGGCAACAAGAACAAGAGAGACAAAAA
AACCGGCTCGAACTCGCAGGCAGGCACGGACGCCGGTAACGGCGCTCTTA
AGACCCCCTCGCACAACCCCAAACCCAGTTCCGCAGCAGTCTACACAGCA
GTCTGTCAAGAAACCGTCCACCAACGGTAAACAGCCCCAGCGGCTTGCCA
CTGGTGACGCTTCTCCCAGCTCTAAAGACTACGCTGGCGCCGCCCGCAAC
GGAACTGGGAAGGGTGGCAGCTCCAGCAATGGAGGT
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