mRNA_P-fluviatile_contig12.1508.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1508.1
Unique NamemRNA_P-fluviatile_contig12.1508.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1508.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.360e-14
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 ASSQAKRRSDNNEDERQLHWFFLTADEHLRKGRVSAAKARRAYEKAVHKRNRARRALHKIRVRAGLVS 204
            A SQA++RSD N++ +QL WF L A+E L KGRVSAAKARRAYEKA+  RNRA RAL KI +R G+ S
Sbjct:  487 ALSQARQRSDANKENKQLVWFCLAAEEELGKGRVSAAKARRAYEKALRNRNRALRALGKITLRTGVSS 554
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE1.360e-1464.71SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2445586..2446153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size208
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.430138-CDS-P-fluviatile_contig12:2445585..24456151622815487.430138-CDS-P-fluviatile_contig12:2445585..2445615Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2445586..2445615 -
1693562046.1638055-CDS-P-fluviatile_contig12:2445585..24456151693562046.1638055-CDS-P-fluviatile_contig12:2445585..2445615Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2445586..2445615 -
1622815487.4464142-CDS-P-fluviatile_contig12:2445976..24461531622815487.4464142-CDS-P-fluviatile_contig12:2445976..2446153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2445977..2446153 -
1693562046.1755586-CDS-P-fluviatile_contig12:2445976..24461531693562046.1755586-CDS-P-fluviatile_contig12:2445976..2446153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2445977..2446153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1508.1prot_P-fluviatile_contig12.1508.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2445586..2446153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1508.1

>prot_P-fluviatile_contig12.1508.1 ID=prot_P-fluviatile_contig12.1508.1|Name=mRNA_P-fluviatile_contig12.1508.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=69bp
ASSQAKRRSDNNEDERQLHWFFLTADEHLRKGRVSAAKARRAYEKAVHKR
NRARRALHKIRVRAGLVSD
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mRNA from alignment at P-fluviatile_contig12:2445586..2446153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1508.1 ID=mRNA_P-fluviatile_contig12.1508.1|Name=mRNA_P-fluviatile_contig12.1508.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=568bp|location=Sequence derived from alignment at P-fluviatile_contig12:2445586..2446153- (Porterinema fluviatile SAG_2381)
GCTTCCTCACAGGCCAAACGAAGATCAGACAACAACGAGGACGAGAGGCA
ACTACATTGGTTCTTTCTGACGGCAGACGAGCACCTACGAAAGGGACGGG
TTTCGGCCGCGAAAGCTCGACGGGCGTACGAGAAGGCAGTGCACAAGAGG
AATAGAGCGCGGCGAGCACTGCACAAGGTGAGAGAGCGTCAGTCGTCGTG
TATCACGTAACCTGGGTTTAAGGCCTGGGGCGTATGGGAATGAGGCAAAC
ATGTACCGAATAGTCTCCTCAACCGCGCAACCTGGTGGGCGTTTTTATTT
TCATCCCATTATTGGACTCTGTCGTCTGCCCCTCTGGCCCCCATCCTCCA
CTCCCACTAGCTAGACGACCCAACCGGGGGCGATCAGGAGGGGGGGACTG
ACCCCCTCCTGTGGTGCCTGCCTTCGAGGTTTTTATCGCGAGCAGGGTTC
AGCACTCCCCACCCTCGTCATTTACTAATATTGTAGAATGGAATAAGACT
GCGCAGCAACCTCTGACAACGTTTCGTACGCACAACAGATTCGCGTGAGG
GCCGGTCTCGTTAGTGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2445586..2446153-

>mRNA_P-fluviatile_contig12.1508.1 ID=mRNA_P-fluviatile_contig12.1508.1|Name=mRNA_P-fluviatile_contig12.1508.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=414bp|location=Sequence derived from alignment at P-fluviatile_contig12:2445586..2446153- (Porterinema fluviatile SAG_2381)
GCTTCCTCACAGGCCAAACGAAGATCAGACAACAACGAGGACGAGAGGCA
ACTACATTGGTTCTTTCTGACGGCAGACGAGCACCTACGAAAGGGACGGG
TTTCGGCCGCGAAAGCTCGACGGGCGTACGAGAAGGCAGTGCACAAGAGG
AATAGAGCGCGGCGAGCACTGCACAAGGCTTCCTCACAGGCCAAACGAAG
ATCAGACAACAACGAGGACGAGAGGCAACTACATTGGTTCTTTCTGACGG
CAGACGAGCACCTACGAAAGGGACGGGTTTCGGCCGCGAAAGCTCGACGG
GCGTACGAGAAGGCAGTGCACAAGAGGAATAGAGCGCGGCGAGCACTGCA
CAAGATTCGCGTGAGGGCCGGTCTCGTTAGTGATATTCGCGTGAGGGCCG
GTCTCGTTAGTGAT
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