mRNA_P-fluviatile_contig12.1506.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1506.1
Unique NamemRNA_P-fluviatile_contig12.1506.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2443707..2444700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size332
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1506.1prot_P-fluviatile_contig12.1506.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2443707..2444700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.2892144-CDS-P-fluviatile_contig12:2443706..24437861622815487.2892144-CDS-P-fluviatile_contig12:2443706..2443786Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2443707..2443786 -
1693562046.123205-CDS-P-fluviatile_contig12:2443706..24437861693562046.123205-CDS-P-fluviatile_contig12:2443706..2443786Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2443707..2443786 -
1622815487.302752-CDS-P-fluviatile_contig12:2444186..24443251622815487.302752-CDS-P-fluviatile_contig12:2444186..2444325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444187..2444325 -
1693562046.1301157-CDS-P-fluviatile_contig12:2444186..24443251693562046.1301157-CDS-P-fluviatile_contig12:2444186..2444325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444187..2444325 -
1622815487.3226614-CDS-P-fluviatile_contig12:2444589..24447001622815487.3226614-CDS-P-fluviatile_contig12:2444589..2444700Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444590..2444700 -
1693562046.1374466-CDS-P-fluviatile_contig12:2444589..24447001693562046.1374466-CDS-P-fluviatile_contig12:2444589..2444700Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444590..2444700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1506.1

>prot_P-fluviatile_contig12.1506.1 ID=prot_P-fluviatile_contig12.1506.1|Name=mRNA_P-fluviatile_contig12.1506.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
MASEDSVRGARLAAAKSWRKYKHATHLQATADRELHTMHRDAGIGTTSED
DVDHYDGEFEYDSDDSDVTTGWDSQADDFSSDEAIRCTSQTSTIWIWTTS
RRVFALPPSP
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mRNA from alignment at P-fluviatile_contig12:2443707..2444700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1506.1 ID=mRNA_P-fluviatile_contig12.1506.1|Name=mRNA_P-fluviatile_contig12.1506.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=994bp|location=Sequence derived from alignment at P-fluviatile_contig12:2443707..2444700- (Porterinema fluviatile SAG_2381)
ATGGCTTCAGAGGACAGCGTTCGGGGTGCTAGATTGGCGGCCGCTAAATC
GTGGCGGAAGTATAAGCATGCTACCCACTTACAGGCGACGGCAGACCGGG
AGCTGCACACGGTGGGGCCCCGTGATTATTGTTTTTCTCGGCGAGTGCAG
TATTTTTCTTGGCGCGCGCCATGTGTTGATTTGATGTCAAAGGTTACTGG
TCGGCACTCTATTGCCGTACCTGACAATCACGGATATCTGCATGGTGTTA
ACCCCCTCCTGGTTTGTGTGGAATCGGTTCATTTTGGCGAGGGCTTTGGG
CGCGTTCAATACGTCCGCGTAGAAATTTTTCATCGCACCCTACGCATTCA
TTCGTGTTCGCCAAACGTTTTGTAGATGCATCGAGACGCCGGCATTGGAA
CGACAAGTGAGGACGATGTCGACCACTACGATGGTGAATTCGAGTACGAC
TCTGACGACAGCGATGTCACAACTGGGTGGGACAGCCAGGCCGACGACTT
CTCGTCGGATGAAGGTATGCCGGCTAAAGAATTGATTTGCAGTCGCTGTG
TGTTGTTGTAGACCTTTTTGCCTCAGGTCCTGTTCTTCTTCGTGATGAAG
GCTACGCGTGAATCAGGTTGTGTAAAGGCGTGGCATTCTCGCGTGAAGGT
ATGCGCGTGCGAGGAGGACAGGCGTCCGAGTCTTTCGGCGCTGTGTTCCA
AGATTCTCAGAAAATGCCCCCCGGAAATGTGTCTGATTCTGTTTTCCAAG
ATTCTCACAAAATGCCCCCCGGAAATGTATCTGATTCTGTTGACCCAGTC
TTGTCTTCAAACCTCACCTCACGCCCCCCTCCGCTTGCCCCCGACTGTGA
TGTCCCTATGCGTTTCGGTGTGTTTGCCTATCTTTTTTTTTTTTTTTTTT
TCAAAAGATGTCAGCGATCCGGTGCACAAGTCAGACGTCCACGATCTGGA
TCTGGACTACGAGTCGAAGGGTGTTCGCGCTCCCACCTTCGCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2443707..2444700-

>mRNA_P-fluviatile_contig12.1506.1 ID=mRNA_P-fluviatile_contig12.1506.1|Name=mRNA_P-fluviatile_contig12.1506.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig12:2443707..2444700- (Porterinema fluviatile SAG_2381)
ATGGCTTCAGAGGACAGCGTTCGGGGTGCTAGATTGGCGGCCGCTAAATC
GTGGCGGAAGTATAAGCATGCTACCCACTTACAGGCGACGGCAGACCGGG
AGCTGCACACGATGGCTTCAGAGGACAGCGTTCGGGGTGCTAGATTGGCG
GCCGCTAAATCGTGGCGGAAGTATAAGCATGCTACCCACTTACAGGCGAC
GGCAGACCGGGAGCTGCACACGATGCATCGAGACGCCGGCATTGGAACGA
CAAGTGAGGACGATGTCGACCACTACGATGGTGAATTCGAGTACGACTCT
GACGACAGCGATGTCACAACTGGGTGGGACAGCCAGGCCGACGACTTCTC
GTCGGATGAAGATGCATCGAGACGCCGGCATTGGAACGACAAGTGAGGAC
GATGTCGACCACTACGATGGTGAATTCGAGTACGACTCTGACGACAGCGA
TGTCACAACTGGGTGGGACAGCCAGGCCGACGACTTCTCGTCGGATGAAG
CGATCCGGTGCACAAGTCAGACGTCCACGATCTGGATCTGGACTACGAGT
CGAAGGGTGTTCGCGCTCCCACCTTCGCCGCGATCCGGTGCACAAGTCAG
ACGTCCACGATCTGGATCTGGACTACGAGTCGAAGGGTGTTCGCGCTCCC
ACCTTCGCCG
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