mRNA_P-fluviatile_contig12.1505.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1505.1
Unique NamemRNA_P-fluviatile_contig12.1505.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2442640..2443680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.2205684-CDS-P-fluviatile_contig12:2442641..24427221622815487.2205684-CDS-P-fluviatile_contig12:2442641..2442722Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2442642..2442722 -
1693562046.0990367-CDS-P-fluviatile_contig12:2442641..24427221693562046.0990367-CDS-P-fluviatile_contig12:2442641..2442722Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2442642..2442722 -
1622815487.2387996-CDS-P-fluviatile_contig12:2443599..24436801622815487.2387996-CDS-P-fluviatile_contig12:2443599..2443680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2443600..2443680 -
1693562046.108874-CDS-P-fluviatile_contig12:2443599..24436801693562046.108874-CDS-P-fluviatile_contig12:2443599..2443680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2443600..2443680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1505.1prot_P-fluviatile_contig12.1505.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2442642..2443680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1505.1

>prot_P-fluviatile_contig12.1505.1 ID=prot_P-fluviatile_contig12.1505.1|Name=mRNA_P-fluviatile_contig12.1505.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
DEIFDSIKKALVSRGHNCCTKVRSIDRVCLTHVDGCTSEPTAKAKKNLAP
VEVL
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mRNA from alignment at P-fluviatile_contig12:2442640..2443680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1505.1 ID=mRNA_P-fluviatile_contig12.1505.1|Name=mRNA_P-fluviatile_contig12.1505.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-fluviatile_contig12:2442640..2443680- (Porterinema fluviatile SAG_2381)
GACGAGATATTCGACAGCATCAAGAAGGCCTTGGTCAGCCGTGGACACAA
CTGCTGCACGAAAGTGCGATCAATCGACCGGGTACGTGATGCCACTCGGT
TTGTATGTTCGCCGGTCGGTGAATCGTCCACAGCCATTCTATATTGAGGA
GGTTGTTCACGTGCCCGGCTCTCGTCTGTTTTGATATCCAACGGTCGCTT
GATATTTTTCCACACAAGGTATCAAAGCTACCAGGTGCTCGTTGGAAGCG
GAAGGAGCTCGTGTGCAAGAACCACGGGAAGTCCACCGCCACGCCTAAGG
TTGCCAACGTCGAGAAACAGAGGAACACGTCATCAGCCAAGGTGTGAACA
TTTCCGGCACTTTATCTTCTTGCTTCCTGACAACGTTGTATGTTGCTACC
GAGATTTTCCCTACCAAACGCGTCCCTTGTTCATCTGCCCAGCTTTGGTA
TATTTTAAGGCGTCTACAGTATACCTCGCTGGTTCGGAACTTTTCGACGT
GCCTCTGCCGTGCCACGTCGGCTCCCGGTTGCCCTGTTTTTTTTTTCAAG
GGAAGCATGTAGTCCCCCCGCTTCTCCTATTGTTCCGGCGACGGCCCTCT
TAACGACTGCTCATCATTCTCTGCGGTCAGTGTTCTTGCACATTCAAGGC
CAGAGTGAACTGGAACGAAGGCTGCGCACCGACTTTGGGCAAGGTGAGTC
AGCGACAAGAGAGTTTGTTTCTTCGTCAAAGCGTGCTTGCAGCGTTCGAG
ATGACGCGCTGGCGTCGTGGAAACGACAGTCGTCATTACTCCCTGGGTGC
TCTGCAAGCGAGGGCGCCTATATAGTGAAGACGTGTTGTGGAGGAATCGC
TTCGTGATCGAAGGTGTCCTAGCAGTGGAGACTGGTATACCGCCGCGCTC
GATCTTGAATCGTGAAGGGCAAGCGCCCCTTGCCCCCCGTAACCTTCCGT
CTGCGCAGGTCTGCCTTACGCATGTTGATGGCTGTACGTCGGAGCCGACT
GCAAAGGCGAAGAAGAACCTGGCCCCCGTTGAAGTCCTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2442640..2443680-

>mRNA_P-fluviatile_contig12.1505.1 ID=mRNA_P-fluviatile_contig12.1505.1|Name=mRNA_P-fluviatile_contig12.1505.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig12:2442640..2443680- (Porterinema fluviatile SAG_2381)
GACGAGATATTCGACAGCATCAAGAAGGCCTTGGTCAGCCGTGGACACAA
CTGCTGCACGAAAGTGCGATCAATCGACCGGGACGAGATATTCGACAGCA
TCAAGAAGGCCTTGGTCAGCCGTGGACACAACTGCTGCACGAAAGTGCGA
TCAATCGACCGGGTCTGCCTTACGCATGTTGATGGCTGTACGTCGGAGCC
GACTGCAAAGGCGAAGAAGAACCTGGCCCCCGTTGAAGTCCTTGTCTGCC
TTACGCATGTTGATGGCTGTACGTCGGAGCCGACTGCAAAGGCGAAGAAG
AACCTGGCCCCCGTTGAAGTCCTT
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