mRNA_P-fluviatile_contig12.1503.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1503.1
Unique NamemRNA_P-fluviatile_contig12.1503.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1503.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.020e-14
Identity = 41/88 (46.59%), Postives = 47/88 (53.41%), Query Frame = 2 
Query:    2 DGGMTHAVETYLPGT-VHLHCLWHVMKN------------------------------ACSDAWMEILRHVKGVGGKCEPYINGYLMK 172
            D GMTHAVET+LP T VHL+CLWHVMKN                              ACSDAW EI RHVKG    CE Y+ G+L++
Sbjct:  208 DAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKKASRFYRLLHAAAFAATEEACSDAWSEIFRHVKG--SDCEEYVTGHLLR 293
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BLAST of mRNA_P-fluviatile_contig12.1503.1 vs. uniprot
Match: D8LCW1_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW1_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.430e-6
Identity = 23/42 (54.76%), Postives = 26/42 (61.90%), Query Frame = 2 
Query:    2 DGGMTHAVETYLPGTVHLHCLWHVMKNACSDAWMEILRHVKG 127
            D  MT+A  T LP TVHLHCLWHVMKN        + +H KG
Sbjct:   25 DAAMTNAARTLLPRTVHLHCLWHVMKN--------VRKHYKG 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE1.020e-1446.59SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LCW1_ECTSI3.430e-654.76MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2440386..2441425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1503.1prot_P-fluviatile_contig12.1503.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2440387..2441425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.1440468-CDS-P-fluviatile_contig12:2440386..24404691622815487.1440468-CDS-P-fluviatile_contig12:2440386..2440469Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2440387..2440469 -
1693562045.9519303-CDS-P-fluviatile_contig12:2440386..24404691693562045.9519303-CDS-P-fluviatile_contig12:2440386..2440469Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2440387..2440469 -
1622815487.1601226-CDS-P-fluviatile_contig12:2440981..24410741622815487.1601226-CDS-P-fluviatile_contig12:2440981..2441074Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2440982..2441074 -
1693562046.0763304-CDS-P-fluviatile_contig12:2440981..24410741693562046.0763304-CDS-P-fluviatile_contig12:2440981..2441074Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2440982..2441074 -
1622815487.1750822-CDS-P-fluviatile_contig12:2441343..24414251622815487.1750822-CDS-P-fluviatile_contig12:2441343..2441425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2441344..2441425 -
1693562046.0884237-CDS-P-fluviatile_contig12:2441343..24414251693562046.0884237-CDS-P-fluviatile_contig12:2441343..2441425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2441344..2441425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1503.1

>prot_P-fluviatile_contig12.1503.1 ID=prot_P-fluviatile_contig12.1503.1|Name=mRNA_P-fluviatile_contig12.1503.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=86bp
GRWYDTCSGNIPAWHRALALSVARDEECMLGRVDGNFAPRQGRRRQVRTV
HQWLPDEVTPRPSALAASTSTTTCSKLPSMSSTNCI
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mRNA from alignment at P-fluviatile_contig12:2440386..2441425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1503.1 ID=mRNA_P-fluviatile_contig12.1503.1|Name=mRNA_P-fluviatile_contig12.1503.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1040bp|location=Sequence derived from alignment at P-fluviatile_contig12:2440386..2441425- (Porterinema fluviatile SAG_2381)
GGACGGTGGTATGACACATGCAGTGGAAACATACCTGCCTGGCACCGTGC
ACTTGCATTGTCTGTGGCACGTGATGAAGAATGTGAGGAAGAATTGCCAA
GGTCCTTTGGGACGCAAGGCAAATCGCTTCTTCAAGCTCCTCTACGCCGC
TGCGTTCGCTACTACAGCGGATGTGAGTAACCTTGTCCGCGGAAGGCGAC
CGAGCAATGAGGCACACCCACCGCATTCCGTCTGTACGTGGGTCAAGTTC
GATTGTTCCGCGCCGTCCTGGAGTGTACACTCCTCCCGCTTACCACGCTC
TACCGGCCGTGTTTTACCACCCTCTGCCTGCCGTTTGGCCGTGTTTTGTA
GGCATGCTCGGACGCGTGGATGGAAATTTTGCGCCACGTCAAGGGCGTCG
GCGGCAAGTGCGAACCGTACATCAATGGCTACCTGATGAAGTGAGTCAAA
ATGTTGAAGTGGCCTTAAGCACGCGCCGTGTGACTGGCCGATAGGCTCCC
TTGCCTTTGTTGATATATCTTGCCCCTCATGGTTGCTTCGTCGAGCAGAT
TATGTCCTTGATGCTGATCGAACTTTGTCCCAACGGGCCATGACAGGTAC
CACAAGTACTGGTGTCGCTGCTTCTTCCCGACGACTATGACGCTCGACAT
GACAGCGACACAGAGGGTGGAGGGATGTTCAGTGTGCTGAAGAAGGGGCG
GTTTGTGAACCGCCGCTCTTCTCTGGTTTGGGTGAAGTCCGAGCTGGAAA
AGCGTATCGCAGGGTTGAGTGCGGCGTCGAACCTGTGAGTGGCTCACGTG
ACCTGCTTTCAATTTCGCTTCAGACCATCCATTGTGGTGCCATCAGGAGG
GGAAACGTTGTTGTGTCGAGATATACTCCGATCCCCGACCCCGTTGCCAC
CATTGGCCGTCAACGTTTGTTTGCCGCTCATGTTATTCACGACCAAGCAT
GCTCAGCTCCAAGACCTTCAGCCTTGGCAGCAAGCACATCGACAACCACG
TGCTCAAAACTGCCGAGCATGTCTTCGACCAACTGCATCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2440386..2441425-

>mRNA_P-fluviatile_contig12.1503.1 ID=mRNA_P-fluviatile_contig12.1503.1|Name=mRNA_P-fluviatile_contig12.1503.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=516bp|location=Sequence derived from alignment at P-fluviatile_contig12:2440386..2441425- (Porterinema fluviatile SAG_2381)
GGACGGTGGTATGACACATGCAGTGGAAACATACCTGCCTGGCACCGTGC
ACTTGCATTGTCTGTGGCACGTGATGAAGAATGGACGGTGGTATGACACA
TGCAGTGGAAACATACCTGCCTGGCACCGTGCACTTGCATTGTCTGTGGC
ACGTGATGAAGAATGCATGCTCGGACGCGTGGATGGAAATTTTGCGCCAC
GTCAAGGGCGTCGGCGGCAAGTGCGAACCGTACATCAATGGCTACCTGAT
GAAGTGAGCATGCTCGGACGCGTGGATGGAAATTTTGCGCCACGTCAAGG
GCGTCGGCGGCAAGTGCGAACCGTACATCAATGGCTACCTGATGAAGTGA
CTCCAAGACCTTCAGCCTTGGCAGCAAGCACATCGACAACCACGTGCTCA
AAACTGCCGAGCATGTCTTCGACCAACTGCATCCTCCAAGACCTTCAGCC
TTGGCAGCAAGCACATCGACAACCACGTGCTCAAAACTGCCGAGCATGTC
TTCGACCAACTGCATC
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