mRNA_P-fluviatile_contig12.1497.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1497.1
Unique NamemRNA_P-fluviatile_contig12.1497.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5KW61_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW61_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.210e-54
Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = 1
Query:   52 MHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREATGCLMWTKLTR 408
            M G  E  GPGE+PDPE+ALLAT+LETGG  IV++YICNSLVKE+W+E QT RM+EM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQLRPKRDDEPAVDKPVREA GCLMWTKLTR
Sbjct:    1 MQGAGEMSGPGESPDPEDALLATILETGGTGIVEDYICNSLVKEQWDEGQTHRMKEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTR 119          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5L5V1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V1_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.250e-53
Identity = 96/136 (70.59%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREATGCLMWTKLTR 408
            PLRHGL+ GRTRKQTREM G             EEALLAT+LETGG  IV++YICNSLVKE+W+EEQTRRMEEM R E+Q+VLG E++ F AEV  SG SQ  PDPQLRPK DD+PAVDKPVREA GCLMWTKLTR
Sbjct:  102 PLRHGLDSGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRHEMQEVLGPEQEVFGAEVDASGPSQSLPDPQLRPKIDDQPAVDKPVREAIGCLMWTKLTR 237          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5L5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G4_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.240e-51
Identity = 99/136 (72.79%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREATGCLMWTKLTR 408
            PLRHGLE GRT KQ  EM G  E          EEALLAT+L TGG  IV++YICNSLVKE+W+EE TRRMEEM RRE Q+VLG E+QAF AEV  SGS QP PDPQLRPKRDDEPAVDKPVREA GCLMWTKLTR
Sbjct:  333 PLRHGLESGRTPKQNWEMQGAGEXXXXXXXXXXEEALLATILATGGTGIVEDYICNSLVKEQWDEEHTRRMEEMYRRETQEVLGPEQQAFGAEVDASGSPQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTR 468          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5LAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS2_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.820e-51
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = 1
Query:   76 GPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREATGCLMWTKLTR 408
            GPGETPDPEE LLAT+LETGG  I+++YICNS VKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQLRPKRDDE AVDKPVREA GCLMWTKLTR
Sbjct:  171 GPGETPDPEEVLLATILETGGTGILEDYICNSFVKEKWDEEQTRRMEEMYRREIQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDELAVDKPVREAIGCLMWTKLTR 281          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5JA80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA80_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 4.320e-48
Identity = 99/162 (61.11%), Postives = 107/162 (66.05%), Query Frame = 1
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLR--------------------------PKRDDEPAVDKPVREATGCLMWTKLTR 408
            P RHGLE GRTRKQTREM G             EEALLAT+LETG   IV++YICNSLVKE+W+EEQTR MEEM RRE+Q+VLG E+QAF AEV  SG SQP PDPQL                           PKRDDEPAVDKPVREA GCLMWTKLTR
Sbjct:   89 PQRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILETGVTGIVEDYICNSLVKEQWDEEQTRHMEEMYRREVQEVLGPEKQAFGAEVDSSGFSQPLPDPQLTYIESMPKRFDVNTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTR 250          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5L519_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L519_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 6.620e-47
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 1
Query:   97 PEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREATGCLMWTKLTR 408
            PE ALLAT+LETGG  IV++YICNSL KE+W+EE TRRMEEM RRE Q+VLG E+Q F AEV  SGSSQP PDPQLRPKRDDEPAVDKPVREA GCLMWTKLTR
Sbjct:   33 PEGALLATILETGGTGIVEDYICNSLGKEQWDEEHTRRMEEMYRREKQEVLGPEQQTFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTR 136          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.430e-46
Identity = 93/132 (70.45%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREATGCLMWT 396
            PLRHGLE GRTRKQTREM G             EEALLAT LETGG  IV+ Y  NSLVKE+W+EE TRRM EM RRE+Q+VLG ++QAF AEV  SGSSQP PDPQLRP +DDEPAVDKPVREA GCLMWT
Sbjct:  727 PLRHGLESGRTRKQTREMQGAXXXXXXXXXXXXEEALLATFLETGGTGIVEGYSWNSLVKEQWDEEYTRRMVEMYRREMQEVLGPQQQAFGAEVDASGSSQPLPDPQLRPNKDDEPAVDKPVREAIGCLMWT 858          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5JCR5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR5_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.920e-46
Identity = 88/109 (80.73%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLR 327
            PLRHGLE GRTRKQTREM G  E PGPGETPDPEE LLAT+LETGGM IV++YICNSLVKE+W+EEQTRRMEEM+RRE+Q+VLG E+QAF AEV  SGSSQP PDPQLR
Sbjct:  491 PLRHGLESGRTRKQTREMQGAWEMPGPGETPDPEEVLLATILETGGMGIVEDYICNSLVKEQWDEEQTRRMEEMNRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLR 599          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5JMP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP4_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.150e-45
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 1
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRKQTREM G  E PGPGET  PEEALLAT+LETGG  IV++Y+CNSLVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGS QP PDPQL
Sbjct:   79 PLRHGLESGRTRKQTREMQGAGEMPGPGETSYPEEALLATILETGGTGIVEDYMCNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSLQPLPDPQL 186          
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Match: A0A6H5JMC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC7_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 7.850e-44
Identity = 91/140 (65.00%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL------RPKRDDEPAVD---KPVREATGCLMW 393
            PLRHGLE GRTRKQTREM G  E PG GET DP+EALLAT+LETGG  IV++YICNSLVKE+W+EEQTRRMEEM RRE+Q+VLG ++Q F AEV  SGSSQP PDPQL      R K  D  AV    K V  +T  + W
Sbjct:  167 PLRHGLESGRTRKQTREMQGVGEMPGAGETSDPQEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPKQQTFGAEVDASGSSQPLPDPQLSMTSPIRQKPSDVEAVPMTYKDVMCSTYKVFW 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW61_9PHAE2.210e-5477.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5V1_9PHAE2.250e-5370.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5G4_9PHAE1.240e-5172.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAS2_9PHAE3.820e-5181.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA80_9PHAE4.320e-4861.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L519_9PHAE6.620e-4779.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZI6_9PHAE2.430e-4670.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCR5_9PHAE7.920e-4680.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP4_9PHAE2.150e-4576.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMC7_9PHAE7.850e-4465.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2365598..2366882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size410
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.0857651-CDS-P-fluviatile_contig12:2365597..23659221622815487.0857651-CDS-P-fluviatile_contig12:2365597..2365922Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2365598..2365922 +
1693562045.7840834-CDS-P-fluviatile_contig12:2365597..23659221693562045.7840834-CDS-P-fluviatile_contig12:2365597..2365922Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2365598..2365922 +
1622815487.1010444-CDS-P-fluviatile_contig12:2366798..23668811622815487.1010444-CDS-P-fluviatile_contig12:2366798..2366881Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2366799..2366881 +
1693562045.7938821-CDS-P-fluviatile_contig12:2366798..23668811693562045.7938821-CDS-P-fluviatile_contig12:2366798..2366881Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2366799..2366881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1497.1prot_P-fluviatile_contig12.1497.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2365598..2366881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1497.1

>prot_P-fluviatile_contig12.1497.1 ID=prot_P-fluviatile_contig12.1497.1|Name=mRNA_P-fluviatile_contig12.1497.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=136bp
PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIV
QEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSS
QPQPDPQLRPKRDDEPAVDKPVREATGCLMWTKLTR
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mRNA from alignment at P-fluviatile_contig12:2365598..2366882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1497.1 ID=mRNA_P-fluviatile_contig12.1497.1|Name=mRNA_P-fluviatile_contig12.1497.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1285bp|location=Sequence derived from alignment at P-fluviatile_contig12:2365598..2366882+ (Porterinema fluviatile SAG_2381)
CCGCTGCGCCATGGGCTTGAGCCTGGCCGCACGCGGAAGCAGACCCGGGA GATGCATGGCACCGAGGAGGCACCGGGGCCCGGAGAAACACCTGACCCGG AAGAGGCGCTGCTGGCGACCGTCCTTGAAACTGGCGGGATGGAGATTGTT CAGGAGTACATCTGCAACTCGCTTGTGAAGGAACGGTGGGAGGAGGAGCA GACGCGCCGGATGGAGGAGATGTCCAGGCGCGAGCTGCAGAAGGTGTTGG GCGAGGAGGAGCAGGCATTCGAGGCCGAGGTCGGCGGCAGCGGGTCTTCG CAACCTCAACCAGACCCGCAGCTAAGTATACCCTCGCCAATCGGGCAGAA ACCGTGTGATGTGGAAGCGTTACCGATGACGTACAAGGATGTGACGTGTT CGAAGTACAAGGTTTTCTGGGATGCGGCCATGAAGAAAGAGATAGATGGT CAAAACAAGGTCGGGACATTCACGAAGGTCAAAGGGCTGCCCGAGGGGCG GAAGGCCATAGGTTCAAAGTGGATATTCTCGTGGAAGACGAACGAGAAGG GTCTGATAACTGACTTTAAGGCCCGTTTGGTTGCACGGGGTTTCTCGCAA ATCCCCGGAATAGACTACCACCATTCATCGTCGGCATGCCCAGCTGCATC GTCTATCAAGTCGGTGATAGCCGTAACCAACGAGAAGGGCAAGAAAGTTG CCCACTGGGATGTTAAGCAAGCATACATCCACGCCAAACTGAAAGAGGAG ATATACCTCAGGCTTCCGGAAGGGTGTAGTAGCATGTCTGGCAAGGTGGT CAAGGTTGAGCGTGCCCTGTATGGTCTGAAGCAGAGTGGTCGAGTGGGGG TTTGAAGCTGCTGATGCCCTCATCGAAAATGGGTACGAGCAGTGCAGGGC TGACCCGTGTGTCTTCCGTAAGATGGTGGATGGAGAGGTCGTAGGTCTGA TTGTGATCTACGTTGATGACATCTTGGTGGCGGCAGACGAGGGAGAGCGA AAGGAGTTGTTCGCATCCCTCAACAAGAAGTTCCCGGTGAAGGATTTGGG GACTGCACGTGGTATGACGGGTGTGCGATTGAGATGGATGTAGAGAACGG CATCACCAAGCTTTCGCAAACAGCGTACATCGAGAGCATGCTGAAGCGGT TTGATGTGACCACAACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTA GGGCCAAAGAGAGATGACGAGCCCGCGGTGGATAAACCGGTGAGGGAGGC AACCGGATGCCTGATGTGGACGAAGCTGACGAGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2365598..2366882+

>mRNA_P-fluviatile_contig12.1497.1 ID=mRNA_P-fluviatile_contig12.1497.1|Name=mRNA_P-fluviatile_contig12.1497.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig12:2365598..2366882+ (Porterinema fluviatile SAG_2381)
CCGCTGCGCCATGGGCTTGAGCCTGGCCGCACGCGGAAGCAGACCCGGGA
GATGCATGGCACCGAGGAGGCACCGGGGCCCGGAGAAACACCTGACCCGG
AAGAGGCGCTGCTGGCGACCGTCCTTGAAACTGGCGGGATGGAGATTGTT
CAGGAGTACATCTGCAACTCGCTTGTGAAGGAACGGTGGGAGGAGGAGCA
GACGCGCCGGATGGAGGAGATGTCCAGGCGCGAGCTGCAGAAGGTGTTGG
GCGAGGAGGAGCAGGCATTCGAGGCCGAGGTCGGCGGCAGCGGGTCTTCG
CAACCTCAACCAGACCCGCAGCTAACCGCTGCGCCATGGGCTTGAGCCTG
GCCGCACGCGGAAGCAGACCCGGGAGATGCATGGCACCGAGGAGGCACCG
GGGCCCGGAGAAACACCTGACCCGGAAGAGGCGCTGCTGGCGACCGTCCT
TGAAACTGGCGGGATGGAGATTGTTCAGGAGTACATCTGCAACTCGCTTG
TGAAGGAACGGTGGGAGGAGGAGCAGACGCGCCGGATGGAGGAGATGTCC
AGGCGCGAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCAGGCATTCGAGGC
CGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAGACCCGCAGCTAA
GGCCAAAGAGAGATGACGAGCCCGCGGTGGATAAACCGGTGAGGGAGGCA
ACCGGATGCCTGATGTGGACGAAGCTGACGAGGGGCCAAAGAGAGATGAC
GAGCCCGCGGTGGATAAACCGGTGAGGGAGGCAACCGGATGCCTGATGTG
GACGAAGCTGACGAGG
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