mRNA_P-fluviatile_contig12.1494.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1494.1
Unique NamemRNA_P-fluviatile_contig12.1494.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2356287..2356859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size573
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1494.1prot_P-fluviatile_contig12.1494.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2356369..2356728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.8856127-UTR-P-fluviatile_contig12:2356286..23563681622815489.8856127-UTR-P-fluviatile_contig12:2356286..2356368Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2356287..2356368 +
1693562048.1238587-UTR-P-fluviatile_contig12:2356286..23563681693562048.1238587-UTR-P-fluviatile_contig12:2356286..2356368Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2356287..2356368 +
1622815489.9060874-UTR-P-fluviatile_contig12:2356728..23568591622815489.9060874-UTR-P-fluviatile_contig12:2356728..2356859Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2356729..2356859 +
1693562048.1422777-UTR-P-fluviatile_contig12:2356728..23568591693562048.1422777-UTR-P-fluviatile_contig12:2356728..2356859Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2356729..2356859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.8961666-CDS-P-fluviatile_contig12:2356368..23567281622815489.8961666-CDS-P-fluviatile_contig12:2356368..2356728Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2356369..2356728 +
1693562048.1343286-CDS-P-fluviatile_contig12:2356368..23567281693562048.1343286-CDS-P-fluviatile_contig12:2356368..2356728Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2356369..2356728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1494.1

>prot_P-fluviatile_contig12.1494.1 ID=prot_P-fluviatile_contig12.1494.1|Name=mRNA_P-fluviatile_contig12.1494.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
MVSNPRPGLRVSLARARFFVFRAFFVFYWSIFLFGVPPSGCYPFHHVSCM
SRVMPVCRVSSIVLCGVLSCACTQPRFVHIIVGAVGAPETHGTGSILFSG
LHLDWIPSGPRLWRCGLCG*
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mRNA from alignment at P-fluviatile_contig12:2356287..2356859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1494.1 ID=mRNA_P-fluviatile_contig12.1494.1|Name=mRNA_P-fluviatile_contig12.1494.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=573bp|location=Sequence derived from alignment at P-fluviatile_contig12:2356287..2356859+ (Porterinema fluviatile SAG_2381)
TGAGGACCGCAGTCCTGGTATCCCGAACACATCTATCGGGTCTTAACCAA
TCCCACAGCGACAGCCTATTTCCGTCCGGAATATGGTGTCAAATCCGAGA
CCTGGCCTGCGTGTTTCGCTGGCTCGTGCTCGATTTTTCGTCTTTCGCGC
CTTTTTTGTTTTTTACTGGTCTATTTTCCTTTTCGGGGTCCCACCGTCAG
GGTGCTATCCTTTTCACCACGTGTCTTGTATGTCTCGCGTAATGCCTGTG
TGCCGCGTGTCTAGCATTGTCCTATGCGGTGTATTATCTTGTGCCTGCAC
ACAACCTCGTTTCGTGCACATAATCGTGGGTGCCGTGGGTGCACCTGAGA
CCCACGGAACGGGATCGATTCTTTTCTCCGGACTGCACCTGGACTGGATA
CCGAGCGGACCCCGACTCTGGAGATGCGGCTTGTGTGGTTGAGCAGTGGT
ACTCGTGAGGTCCAGAGATGCGTCCCTTGTGCGGCAAGAACACCACCGCA
TTGAGCCCCCCTCCCCGCGTACTGCCCAATCCGGATGGCTGAGCAAGTGC
TATAAAGATATGATGAGAAAAAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2356287..2356859+

>mRNA_P-fluviatile_contig12.1494.1 ID=mRNA_P-fluviatile_contig12.1494.1|Name=mRNA_P-fluviatile_contig12.1494.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig12:2356287..2356859+ (Porterinema fluviatile SAG_2381)
ATGGTGTCAAATCCGAGACCTGGCCTGCGTGTTTCGCTGGCTCGTGCTCG
ATTTTTCGTCTTTCGCGCCTTTTTTGTTTTTTACTGGTCTATTTTCCTTT
TCGGGGTCCCACCGTCAGGGTGCTATCCTTTTCACCACGTGTCTTGTATG
TCTCGCGTAATGCCTGTGTGCCGCGTGTCTAGCATTGTCCTATGCGGTGT
ATTATCTTGTGCCTGCACACAACCTCGTTTCGTGCACATAATCGTGGGTG
CCGTGGGTGCACCTGAGACCCACGGAACGGGATCGATTCTTTTCTCCGGA
CTGCACCTGGACTGGATACCGAGCGGACCCCGACTCTGGAGATGCGGCTT
GTGTGGTTGAATGGTGTCAAATCCGAGACCTGGCCTGCGTGTTTCGCTGG
CTCGTGCTCGATTTTTCGTCTTTCGCGCCTTTTTTGTTTTTTACTGGTCT
ATTTTCCTTTTCGGGGTCCCACCGTCAGGGTGCTATCCTTTTCACCACGT
GTCTTGTATGTCTCGCGTAATGCCTGTGTGCCGCGTGTCTAGCATTGTCC
TATGCGGTGTATTATCTTGTGCCTGCACACAACCTCGTTTCGTGCACATA
ATCGTGGGTGCCGTGGGTGCACCTGAGACCCACGGAACGGGATCGATTCT
TTTCTCCGGACTGCACCTGGACTGGATACCGAGCGGACCCCGACTCTGGA
GATGCGGCTTGTGTGGTTGA
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