mRNA_P-fluviatile_contig12.1491.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1491.1
Unique NamemRNA_P-fluviatile_contig12.1491.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1491.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 3.180e-76
Identity = 127/136 (93.38%), Postives = 128/136 (94.12%), Query Frame = 1 
Query:  124 FSARLDRAWIHLDFGCADRWRG----SLWYTGAGMEPVEAHQPSPLQAKFARKGKGGPFPKFDTREESGDESGVEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPEPNKALDFHAKTDGQIVDRLVENAANVY 519
            FSARLDRAW+HLD GCADRWR     SLWYTGAGMEPVE HQPSPLQAKFARKGKGGPFPKFDTREESGDES VEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPEPNKALDFHAKTDGQIVDRLVENAANVY
Sbjct:  137 FSARLDRAWMHLDLGCADRWRACVQLSLWYTGAGMEPVETHQPSPLQAKFARKGKGGPFPKFDTREESGDESCVEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPEPNKALDFHAKTDGQIVDRLVENAANVY 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE3.180e-7693.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2302363..2304284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size523
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1491.1prot_P-fluviatile_contig12.1491.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2302365..2304284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.914332-CDS-P-fluviatile_contig12:2302364..23024451622815486.914332-CDS-P-fluviatile_contig12:2302364..2302445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302365..2302445 -
1693562045.4516919-CDS-P-fluviatile_contig12:2302364..23024451693562045.4516919-CDS-P-fluviatile_contig12:2302364..2302445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302365..2302445 -
1622815486.9345176-CDS-P-fluviatile_contig12:2302598..23027511622815486.9345176-CDS-P-fluviatile_contig12:2302598..2302751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302599..2302751 -
1693562045.596802-CDS-P-fluviatile_contig12:2302598..23027511693562045.596802-CDS-P-fluviatile_contig12:2302598..2302751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302599..2302751 -
1622815486.9501455-CDS-P-fluviatile_contig12:2302916..23030131622815486.9501455-CDS-P-fluviatile_contig12:2302916..2303013Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302917..2303013 -
1693562045.7089918-CDS-P-fluviatile_contig12:2302916..23030131693562045.7089918-CDS-P-fluviatile_contig12:2302916..2303013Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302917..2303013 -
1622815486.9650865-CDS-P-fluviatile_contig12:2303462..23035701622815486.9650865-CDS-P-fluviatile_contig12:2303462..2303570Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2303463..2303570 -
1693562045.724719-CDS-P-fluviatile_contig12:2303462..23035701693562045.724719-CDS-P-fluviatile_contig12:2303462..2303570Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2303463..2303570 -
1622815486.9751976-CDS-P-fluviatile_contig12:2303868..23038921622815486.9751976-CDS-P-fluviatile_contig12:2303868..2303892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2303869..2303892 -
1693562045.733808-CDS-P-fluviatile_contig12:2303868..23038921693562045.733808-CDS-P-fluviatile_contig12:2303868..2303892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2303869..2303892 -
1622815486.9892485-CDS-P-fluviatile_contig12:2304228..23042841622815486.9892485-CDS-P-fluviatile_contig12:2304228..2304284Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2304229..2304284 -
1693562045.7452655-CDS-P-fluviatile_contig12:2304228..23042841693562045.7452655-CDS-P-fluviatile_contig12:2304228..2304284Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2304229..2304284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1491.1

>prot_P-fluviatile_contig12.1491.1 ID=prot_P-fluviatile_contig12.1491.1|Name=mRNA_P-fluviatile_contig12.1491.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=173bp
RLTPSAAGVAERGVCSSSGLDRALGSRFLKSSSRATAGLALFSARLDRAW
IHLDFGCADRWRGSLWYTGAGMEPVEAHQPSPLQAKFARKGKGGPFPKFD
TREESGDESGVEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPEPNKA
LDFHAKTDGQIVDRLVENAANVY
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mRNA from alignment at P-fluviatile_contig12:2302363..2304284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1491.1 ID=mRNA_P-fluviatile_contig12.1491.1|Name=mRNA_P-fluviatile_contig12.1491.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1922bp|location=Sequence derived from alignment at P-fluviatile_contig12:2302363..2304284- (Porterinema fluviatile SAG_2381)
CGACTGACTCCCTCTGCTGCTGGTGTGGCGGAGAGAGGGGTGTGCAGCAG
CAGTGGGTGAGGTTCCCTTTTTTTGGTTGTGTGTGGTGTGCGGCAGTACC
GCCTACCGTGTTTGGCGCGTGCGAGGCAACCTTCAACTTTCCCTCCCTTG
ATGCCCGCGCGCTACGCCCGGTGATCTTCACCCGTGCCCTTTTCCGGCGC
AACTGTGTTGTGCGCTTGGATCCACGATGATCCGTCTGCTACTGGTCGGG
GTACTTGGCTTCATTGCACCCTCTCAAGCAATGCAGATCAGCACACCCTC
ATGATTTCCCGCCTGCACACACCACCACATGTTCGGAAGAAGCCCGCCGA
GCACAACTGCCGGCGCTCGTCACCGCTGCCCTTTTTGGCCAGGCTGGATC
GAGCGCTCGGATCCAGGTGGATCTCTGCTGCTGGTCGGCGGAGGGGCTGT
GTAGCATCAGCGGATGAGGTTCTCTCTTTTGGTTGTGTACGGTGTGCGGC
TGTACCGCCTACCGTGTTTGGCGCGCGCGAGGCAACCGATGCCCGCACGG
CTGCACCCGATGATCTTCACCCGTGCCCTTTCCGGCGCTACTGTATTGTG
CGCTTGATCCGGGTTGATCCGGTAGCGCTGAAAAGGTTCGGGTATTTCGT
GCCTCCTTGCATCCGTACACGCGTGTTCCTCCTCGTGACTTCCCACCCGC
GCACACCACCCCAGGTTTTTAAAGAGCTCGTCGCGCGCGACTGCCGGCCT
TGCCCTTTTTTCGGCGCGGCTGGATCGCGCTTGGATCCACCTGGATTTTG
GTTGTGCTGATCGGTGGAGAGGGTGTGTACAACTGTAGGCGAGGTTTCCC
TCATCGCATTCTGTTCGCGGCAGTACCGCATACACTAGACTGATCCAGAC
AATGGAAGTGTAGGGATGTAGCAATGTGCGCAGCAGAGGGTACGCTTTGA
CCGTCTCTTGATCTCTCTCCTTCACACGCGGTGGTTGGTGCGTCTGTGTA
AGAGACACAAAAGCGCGTTTTTGACCTAACGGCGTGCACGCATTCTAAGT
CATCGCCCCCTTCTCACATTGATCGGCACGCGTGAGGTTTCCGTGCTTTC
GTCCCATCGAGCACTTCATTTTTTGCAGTAAATAAACAGAGATGGGTTGC
TGGGAAAGCCGGGGTGGCGTCGTGCCCGTGTTCTTTCCGGAGCGAACATT
GTCGCGAAGAGTGTATGACGTAAGTTTTCAAATATCGCGCGGTTGCTACA
TGACATGCCAATTTTTTGCAGCAGTCTTTGGTACACCGGCGCCGGGATGG
AGCCCGTGGAGGCCCATCAACCTTCACCCCTGCAAGCCAAGTTCGCAAGG
AAAGGAAAAGGCGGACCGGTAAGCCGATGCTCAAAGTTGTTGATCACCAT
CAGTGGCGTTAACGTACGTGCTTGTTTTTCAGAATGCATGTAGAGAGATC
ACAACCAGTCACCACCCGCTCGACAGTTTTGCTTTTTCGATCCAAACGAA
CTTTCACGCCCTTTCTTTGCTCACCGTGTCCAGTTCCCCAAGTTCGACAC
TAGGGAGGAGAGTGGGGACGAGAGCGGTGTCGAAATCTCAAGGACGGAGA
AGCAAAAACGTAGAAAGAAGAGGAAGTCGGCCGCTGCCGACCTTGACGGC
CTGCAGAAACGTCTTCAAGACCGCGGTCATCCAGAGGTAATATCATCGTC
AATTTTTGGCTTTTACGCCGAAATCTGGCCTTAAAGCGGTCGTCAGTCTC
CCAGTCCGGCCCCACTTTCGTACTGTACATGACCCACCACCCTTTCATTC
CACGTCGCGTGCGACTTGTTGTTCGTCTCCGTTGTTCAGCCAAACAAGGC
ACTCGATTTTCACGCGAAGACCGATGGGCAAATCGTCGACAGGCTTGTGG
AGAATGCGGCGAACGTGTACAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2302363..2304284-

>mRNA_P-fluviatile_contig12.1491.1 ID=mRNA_P-fluviatile_contig12.1491.1|Name=mRNA_P-fluviatile_contig12.1491.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1038bp|location=Sequence derived from alignment at P-fluviatile_contig12:2302363..2304284- (Porterinema fluviatile SAG_2381)
CGACTGACTCCCTCTGCTGCTGGTGTGGCGGAGAGAGGGGTGTGCAGCAG
CAGTGGCGACTGACTCCCTCTGCTGCTGGTGTGGCGGAGAGAGGGGTGTG
CAGCAGCAGTGGGCTGGATCGAGCGCTCGGATCCAGGCTGGATCGAGCGC
TCGGATCCAGGTTTTTAAAGAGCTCGTCGCGCGCGACTGCCGGCCTTGCC
CTTTTTTCGGCGCGGCTGGATCGCGCTTGGATCCACCTGGATTTTGGTTG
TGCTGATCGGTGGAGAGGGTTTTTAAAGAGCTCGTCGCGCGCGACTGCCG
GCCTTGCCCTTTTTTCGGCGCGGCTGGATCGCGCTTGGATCCACCTGGAT
TTTGGTTGTGCTGATCGGTGGAGAGGCAGTCTTTGGTACACCGGCGCCGG
GATGGAGCCCGTGGAGGCCCATCAACCTTCACCCCTGCAAGCCAAGTTCG
CAAGGAAAGGAAAAGGCGGACCGCAGTCTTTGGTACACCGGCGCCGGGAT
GGAGCCCGTGGAGGCCCATCAACCTTCACCCCTGCAAGCCAAGTTCGCAA
GGAAAGGAAAAGGCGGACCGTTCCCCAAGTTCGACACTAGGGAGGAGAGT
GGGGACGAGAGCGGTGTCGAAATCTCAAGGACGGAGAAGCAAAAACGTAG
AAAGAAGAGGAAGTCGGCCGCTGCCGACCTTGACGGCCTGCAGAAACGTC
TTCAAGACCGCGGTCATCCAGAGTTCCCCAAGTTCGACACTAGGGAGGAG
AGTGGGGACGAGAGCGGTGTCGAAATCTCAAGGACGGAGAAGCAAAAACG
TAGAAAGAAGAGGAAGTCGGCCGCTGCCGACCTTGACGGCCTGCAGAAAC
GTCTTCAAGACCGCGGTCATCCAGAGCCAAACAAGGCACTCGATTTTCAC
GCGAAGACCGATGGGCAAATCGTCGACAGGCTTGTGGAGAATGCGGCGAA
CGTGTACCCAAACAAGGCACTCGATTTTCACGCGAAGACCGATGGGCAAA
TCGTCGACAGGCTTGTGGAGAATGCGGCGAACGTGTAC
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