mRNA_P-fluviatile_contig12.1490.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1490.1
Unique NamemRNA_P-fluviatile_contig12.1490.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1490.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.430e-8
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 DQQIFDEWVETYGSYARSYTRVDRVRAR 84
            DQQ+FDEWVE YGSYARSYTRVDRVR R
Sbjct:  356 DQQVFDEWVEKYGSYARSYTRVDRVRYR 383
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE3.430e-889.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2301516..2302115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.033677-CDS-P-fluviatile_contig12:2301515..23016271622815487.033677-CDS-P-fluviatile_contig12:2301515..2301627Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2301516..2301627 -
1693562045.7656791-CDS-P-fluviatile_contig12:2301515..23016271693562045.7656791-CDS-P-fluviatile_contig12:2301515..2301627Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2301516..2301627 -
1622815487.047683-CDS-P-fluviatile_contig12:2302038..23021151622815487.047683-CDS-P-fluviatile_contig12:2302038..2302115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302039..2302115 -
1693562045.7755635-CDS-P-fluviatile_contig12:2302038..23021151693562045.7755635-CDS-P-fluviatile_contig12:2302038..2302115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2302039..2302115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1490.1prot_P-fluviatile_contig12.1490.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2301516..2302115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1490.1

>prot_P-fluviatile_contig12.1490.1 ID=prot_P-fluviatile_contig12.1490.1|Name=mRNA_P-fluviatile_contig12.1490.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=63bp
DQQIFDEWVETYGSYARSYTRVDRVRARRWPKTALGISMMPVTTPSTRTR
MVVAEAMAMRVE*
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mRNA from alignment at P-fluviatile_contig12:2301516..2302115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1490.1 ID=mRNA_P-fluviatile_contig12.1490.1|Name=mRNA_P-fluviatile_contig12.1490.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=600bp|location=Sequence derived from alignment at P-fluviatile_contig12:2301516..2302115- (Porterinema fluviatile SAG_2381)
GACCAACAGATCTTCGACGAGTGGGTGGAAACGTATGGTAGCTACGCCCG
GAGCTACACACGAGTGGATCGAGTCCGGTACAGGGTAATTTTTTTTTTGG
GGGGGGGGATTGTAGTTTTGTGCGTTTGTCAGGTTGTACAGTATCTCCCG
TTCCCCCCCTTGCACGCTGGTAAGGCAGCTGGTGTTCTACCTGTTTTTTT
CCCTCCGAGTTGAATGTACCTTATGTTTTTGTTTTGTGCGTAGGACCATG
GCCCCCTTGGGGCCCCGTGCCGGTCATCTGCGCGTGTGTATTTTAGTTTT
TGATGCGGCGCTTTTCGCGTATGCCCTGTTTTGTGACCACGGGCTCTAAA
CTTTGGACAAGAGCTAATGTGAGAAATCACAACAGCAAACAACAGTATCA
CCATCCGACCAACCCTTCCCCCTCACCACTTACTCGGTTGTGTGCTGTTG
TGGTCGTTTGACTCCAAACACTTGTCTTGTACCCTCAGGGCACGACGTTG
GCCGAAGACAGCGTTGGGGATATCGATGATGCCGGTGACGACACCCTCGA
CGAGAACGAGGATGGTTGTGGCAGAGGCGATGGCGATGCGGGTGGAATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2301516..2302115-

>mRNA_P-fluviatile_contig12.1490.1 ID=mRNA_P-fluviatile_contig12.1490.1|Name=mRNA_P-fluviatile_contig12.1490.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=378bp|location=Sequence derived from alignment at P-fluviatile_contig12:2301516..2302115- (Porterinema fluviatile SAG_2381)
GACCAACAGATCTTCGACGAGTGGGTGGAAACGTATGGTAGCTACGCCCG
GAGCTACACACGAGTGGATCGAGTCCGGACCAACAGATCTTCGACGAGTG
GGTGGAAACGTATGGTAGCTACGCCCGGAGCTACACACGAGTGGATCGAG
TCCGGGCACGACGTTGGCCGAAGACAGCGTTGGGGATATCGATGATGCCG
GTGACGACACCCTCGACGAGAACGAGGATGGTTGTGGCAGAGGCGATGGC
GATGCGGGTGGAATGAGGCACGACGTTGGCCGAAGACAGCGTTGGGGATA
TCGATGATGCCGGTGACGACACCCTCGACGAGAACGAGGATGGTTGTGGC
AGAGGCGATGGCGATGCGGGTGGAATGA
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