mRNA_P-fluviatile_contig12.1488.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1488.1
Unique NamemRNA_P-fluviatile_contig12.1488.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.500e-21
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 2 
Query:  116 DESXXXXQDSDSRSERRREDA----DEGAILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQY 454
            D S    +D DS  E  RE A    DE  ++D DD +  D     + IP+G+ +    PAAL ++L+++ +L+RLG+GW+ G+ITRQ+Q RTRH YD+RV LD D STRSMKLPL+ Y
Sbjct:   76 DHSGEGVEDGDSSDEDTRETASGQMDELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMY 193
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BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.650e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:  179 DEGAILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCAD 463
            DE + +D DD +  D+    + IP+G+ +    PAAL   L+++ +L+RLG+GW  G+ITRQ+Q RTRH YD+RV LD D STR MKL L+ Y  D
Sbjct:    2 DELSHVDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGD 97
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BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.600e-18
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:   83 LFSQPPGSSDEDESXXXXQDSDSRSERRREDADEGAILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCAD 463
            L  Q  G S+ +E      +SD   E++ ED      L  DD L   E  L + IP+G+ L   PP+AL  +LVK+ +L++LG+GW  GVI+R+A   +R  YD+RV L  DGSTRSMKLPL+ Y  D
Sbjct: 1830 LGLQLGGDSESEEDASSCDESDGDDEKQSEDP--LTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTD 1955
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BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.680e-18
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2 
Query:  188 AILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLD 448
            +++D DD +  D+  L + IP+G+ +    PAAL ++  ++ +L+RLG+GW   VITRQ+Q RTRH YD+RV LD D STRSMKLPL+
Sbjct:  127 SLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLE 214
[Close]
BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.120e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 2 
Query:  188 AILDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQY 454
            +++D DD +  D+    + IP+G+ +    PAA+ ++L+++ +L+RLG+GW  GVITR++Q RTRH YD+RV LD D ST SMKLPL+ Y
Sbjct:  250 SLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMY 339
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BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.030e-17
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 2 
Query:  215 ADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCAD 463
            +DDE+   + IP+G+ +    PAAL  +L+++ +L+RLG+GW  GVITRQ+Q RTRH YD+RV LD D STRSMKLPL+ Y  D
Sbjct:  545 SDDEIRA-MEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGD 627
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BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5L1Y1_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.420e-14
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 2 
Query:  179 DEGAILDIDDDLADDEVPLP----IRIPEGYTLC-MPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCAD 463
            DE A+LD DDD  D + P      +  P G+ +  + P AL   L+++ +L+RLG+GW RG+I +Q+Q  TRH YD+ V L+ D STR MKLPLD+Y  D
Sbjct:  929 DELALLDDDDDRMDPQDPEDETQGMESPTGFRIQEVKPVALDRLLLRRGVLVRLGMGWFRGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLPLDKYTGD 1028
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BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5JR18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR18_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.580e-12
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 2 
Query:  179 DEGAILDIDDDLADDEVP---LPIRIPEGYTLC-MPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCAD 463
            DE A+LD DD +  D+       + IP G+ L    PAAL   L+++ + +RLG+GW+ G+I +Q+  R  H YD+ V L+ D STR+MKLPLD+Y  D
Sbjct:   24 DELALLDEDDSMDPDDPEDETQGMEIPAGFRLQESTPAALDRLLLQRGVFVRLGMGWIGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDKYSGD 120
[Close]
BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.050e-10
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:  314 LLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDGSTRSMKLPLDQYCAD 463
            L+RLG+G   GVITRQ+Q RTRH YD+RV LD D STRSMKLPL+ Y  D
Sbjct:  619 LVRLGMGCFGGVITRQSQKRTRHLYDYRVHLDLDQSTRSMKLPLEMYRGD 668
[Close]
BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.060e-10
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:  194 LDIDDDLADDEVPLPIRIPEGYTL-CMPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFL 406
            LD DD+L+ +E  L + IP+G+ L   PP AL  ++VK+ +L++LG+GW  GV++R++   +R  YD+RV L
Sbjct:   20 LDDDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVIL 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5K2B3_9PHAE2.500e-2147.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHL7_9PHAE1.650e-1847.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE2.600e-1843.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUT4_9PHAE5.680e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J8_9PHAE7.120e-1847.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE2.030e-1754.76C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1Y1_9PHAE1.420e-1446.00HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JR18_9PHAE2.580e-1243.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXH0_9PHAE1.050e-1068.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY33_9PHAE1.060e-1043.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2294069..2294531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue9.1e-08
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size195
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.6159525-UTR-P-fluviatile_contig12:2294068..22943361622815518.6159525-UTR-P-fluviatile_contig12:2294068..2294336Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2294069..2294336 +
1693562118.5593956-UTR-P-fluviatile_contig12:2294068..22943361693562118.5593956-UTR-P-fluviatile_contig12:2294068..2294336Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2294069..2294336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.6275601-CDS-P-fluviatile_contig12:2294336..22945311622815518.6275601-CDS-P-fluviatile_contig12:2294336..2294531Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2294337..2294531 +
1693562118.5708413-CDS-P-fluviatile_contig12:2294336..22945311693562118.5708413-CDS-P-fluviatile_contig12:2294336..2294531Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2294337..2294531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1488.1prot_P-fluviatile_contig12.1488.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2294337..2294531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1488.1

>prot_P-fluviatile_contig12.1488.1 ID=prot_P-fluviatile_contig12.1488.1|Name=mRNA_P-fluviatile_contig12.1488.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=65bp
MPPAALTAALVKQPILLRLGVGWVRGVITRQAQARTRHRYDFRVFLDGDG
STRSMKLPLDQYCAD
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mRNA from alignment at P-fluviatile_contig12:2294069..2294531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1488.1 ID=mRNA_P-fluviatile_contig12.1488.1|Name=mRNA_P-fluviatile_contig12.1488.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=463bp|location=Sequence derived from alignment at P-fluviatile_contig12:2294069..2294531+ (Porterinema fluviatile SAG_2381)
ACGTACTTGATTCGAAAACATGAGAATAAATAGATAACAGGCAGGAATTT
TGAATTGGCAGTTTCAGGGGTCACCGCGGTAATTGTTTTCCCAGCCCCCG
GGTTCAAGTGACGAGGACGAGAGCGATGACGACTTCCAAGATTCGGATAG
TCGGAGCGAGAGGCGACGTGAGGACGCCGATGAGGGTGCCATCTTGGATA
TCGACGATGATCTTGCCGATGACGAGGTTCCCCTGCCAATTCGGATCCCC
GAAGGATATACCCTGTGCATGCCGCCTGCAGCTCTCACCGCAGCCTTGGT
GAAGCAACCGATACTGCTGCGGCTTGGTGTGGGCTGGGTGCGCGGAGTCA
TCACGCGACAGGCTCAAGCCCGCACGCGCCACCGCTACGACTTCAGGGTT
TTTCTCGACGGTGATGGCAGTACGCGCAGCATGAAACTGCCGTTGGACCA
ATACTGTGCGGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2294069..2294531+

>mRNA_P-fluviatile_contig12.1488.1 ID=mRNA_P-fluviatile_contig12.1488.1|Name=mRNA_P-fluviatile_contig12.1488.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig12:2294069..2294531+ (Porterinema fluviatile SAG_2381)
ATGCCGCCTGCAGCTCTCACCGCAGCCTTGGTGAAGCAACCGATACTGCT
GCGGCTTGGTGTGGGCTGGGTGCGCGGAGTCATCACGCGACAGGCTCAAG
CCCGCACGCGCCACCGCTACGACTTCAGGGTTTTTCTCGACGGTGATGGC
AGTACGCGCAGCATGAAACTGCCGTTGGACCAATACTGTGCGGACATGCC
GCCTGCAGCTCTCACCGCAGCCTTGGTGAAGCAACCGATACTGCTGCGGC
TTGGTGTGGGCTGGGTGCGCGGAGTCATCACGCGACAGGCTCAAGCCCGC
ACGCGCCACCGCTACGACTTCAGGGTTTTTCTCGACGGTGATGGCAGTAC
GCGCAGCATGAAACTGCCGTTGGACCAATACTGTGCGGAC
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