mRNA_P-fluviatile_contig12.1487.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1487.1
Unique NamemRNA_P-fluviatile_contig12.1487.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5JMC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC7_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 2.220e-63
Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RYP G++GKKLLWGAS+AGPLRHGLE GRTRKQTREM G  E PG GET DP+EALLAT+LETGG  IV++YICNSLVKE+W+EEQTRRMEEM RRE+Q+VLG ++Q F AEV  SGSSQP PDPQ
Sbjct:  137 LEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGVGEMPGAGETSDPQEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPKQQTFGAEVDASGSSQPLPDPQ 273          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5L1D0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D0_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 4.630e-63
Identity = 105/137 (76.64%), Postives = 118/137 (86.13%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RY  G++GKKLLWGAS+AGPLRHGLE GRTRKQT EM G  E PGPG+TPDPEEALLAT+LE GG  IV++YICNSLVKE+W+EEQ RRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:  103 LEELKYDPADDRYSRGLEGKKLLWGASNAGPLRHGLESGRTRKQTWEMQGAGEMPGPGQTPDPEEALLATILENGGTGIVEDYICNSLVKEQWDEEQIRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 239          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5JMP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP4_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.330e-62
Identity = 104/137 (75.91%), Postives = 117/137 (85.40%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RYP G++GKKLL GA +AGPLRHGLE GRTRKQTREM G  E PGPGET  PEEALLAT+LETGG  IV++Y+CNSLVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGS QP PDPQ
Sbjct:   49 LEELKYDPADDRYPHGLEGKKLLCGAWNAGPLRHGLESGRTRKQTREMQGAGEMPGPGETSYPEEALLATILETGGTGIVEDYMCNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSLQPLPDPQ 185          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 2.410e-62
Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RYP G++GKKLLWGAS+AGPLRHGLE GRTRKQTREM G  E  GPGETPDPEEALLAT+LETGG  IV++YICNSLVKE+W+EEQTR MEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:   59 LEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGEMSGPGETPDPEEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRHMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 195          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5K1G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G4_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.330e-61
Identity = 106/137 (77.37%), Postives = 119/137 (86.86%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RYP G++GKKLLWGAS+AGPLRHGLE GRTR QTREM G  E  GPGETP P+EALLAT+LETGG  IV++YICNSLVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:  326 LEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRYQTREMQGAGEMSGPGETPVPKEALLATILETGGAGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 462          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5JNJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ1_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.560e-61
Identity = 104/137 (75.91%), Postives = 118/137 (86.13%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RYP G++GK+LLWGA++AGPLRHGLE GRTRKQTREM G  E P PGET DPEEALLAT+LETGG   V++YICNSLVKE+W+EEQTRR EEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:  105 LEELKYDPADDRYPRGIEGKELLWGAANAGPLRHGLESGRTRKQTREMQGAGEMPRPGETTDPEEALLATILETGGTGTVEDYICNSLVKEQWDEEQTRRTEEMYRREVQEVLGPEQQAFGAEVDASGSSQPLPDPQ 241          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5L0R5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R5_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 2.830e-59
Identity = 103/137 (75.18%), Postives = 116/137 (84.67%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RYP G++GKKLL GAS+AGPLRHGLE GRTRKQTREM G  E PGPGETP+  EALLAT+L+TGG  IV+ YIC  LVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:   80 LEELKYDPADDRYPRGLEGKKLLLGASNAGPLRHGLESGRTRKQTREMQGAGEMPGPGETPN--EALLATILQTGGTGIVEYYICKPLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 214          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.090e-58
Identity = 104/137 (75.91%), Postives = 118/137 (86.13%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +EELKYDPAD RYP G++GKKLLWGAS+AGPLRHGLE GRTRKQTREM G  E PGPGETPD +EALLAT+LET G   V++YICNSLVK +W++EQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:  111 LEELKYDPADDRYPCGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGEMPGPGETPDMKEALLATILETSGTGSVEDYICNSLVKGQWDKEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 247          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5JRY6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY6_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.400e-58
Identity = 105/137 (76.64%), Postives = 117/137 (85.40%), Query Frame = -3
Query:    2 IEELKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 412
            +E LKYDPAD RYP G++GKKLLWGAS+AGPLRHGLE GRTRKQTREM      PGPGETPDPEEALLAT+LETGG  IV++Y CNSLVK +W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:  128 LEGLKYDPADERYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREM------PGPGETPDPEEALLATILETGGTGIVEDYTCNSLVKGQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 258          
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Match: A0A6H5JI90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI90_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 2.850e-58
Identity = 102/134 (76.12%), Postives = 116/134 (86.57%), Query Frame = -3
Query:    2 LKYDPADARYPSGVQGKKLLWGASSAGPLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 403
            LKYDPAD  YP G++GKKLLWGAS+AGPLRHGLE GRTRK+ REM G  E P PGETPDPEEALLAT+L+TGG  IV++YIC+SLVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:  306 LKYDPADDSYPRGLEGKKLLWGASNAGPLRHGLESGRTRKKAREMQGAGEMPVPGETPDPEEALLATILKTGGTGIVEDYICSSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 439          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMC7_9PHAE2.220e-6376.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1D0_9PHAE4.630e-6376.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP4_9PHAE1.330e-6275.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF18_9PHAE2.410e-6278.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1G4_9PHAE1.330e-6177.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ1_9PHAE2.560e-6175.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0R5_9PHAE2.830e-5975.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ24_9PHAE1.090e-5875.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY6_9PHAE2.400e-5876.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI90_9PHAE2.850e-5876.12Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2279835..2280263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.8528042-CDS-P-fluviatile_contig12:2279834..22802631622815489.8528042-CDS-P-fluviatile_contig12:2279834..2280263Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2279835..2280263 +
1693562048.109256-CDS-P-fluviatile_contig12:2279834..22802631693562048.109256-CDS-P-fluviatile_contig12:2279834..2280263Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2279835..2280263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1487.1prot_P-fluviatile_contig12.1487.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2279835..2280263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1487.1

>prot_P-fluviatile_contig12.1487.1 ID=prot_P-fluviatile_contig12.1487.1|Name=mRNA_P-fluviatile_contig12.1487.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
AAGLVEVAKTRCRRPRPRMPAPPRPTPSAARAWTSPPSGASAPPPTVPSQ
ASCRCTPEQSPSRQFQGRSPAAPLPGQVFLRAPVPPRCHASPGSASACGQ
AQAHGAAGQHWTRPRGVSSPVPRRDSGRRLDHTSAPRYHRRYH
back to top

mRNA from alignment at P-fluviatile_contig12:2279835..2280263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1487.1 ID=mRNA_P-fluviatile_contig12.1487.1|Name=mRNA_P-fluviatile_contig12.1487.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=429bp|location=Sequence derived from alignment at P-fluviatile_contig12:2279835..2280263+ (Porterinema fluviatile SAG_2381)
GCTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCGACCTCGGCC TCGAATGCCTGCTCCTCCTCGCCCAACACCTTCTGCAGCTCGCGCCTGGA CATCTCCTCCATCCGGCGCGTCTGCTCCTCCTCCCACCGTTCCTTCACAA GCGAGTTGCAGATGTACTCCTGAACAATCTCCATCCCGCCAGTTTCAAGG ACGGTCGCCAGCAGCGCCTCTTCCGGGTCAGGTGTTTCTCCGGGCCCCGG TGCCTCCTCGGTGCCATGCATCTCCCGGGTCTGCTTCCGCGTGCGGCCAG GCTCAAGCCCATGGCGCAGCGGGCCAGCACTGGACGCGCCCCAGAGGAGT TTCTTCCCCTGTACCCCGGAGGGATAGCGGGCGTCGGCTGGATCATACTT CAGCTCCTCGATATCACCGCCGCTATCAT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:2279835..2280263+

>mRNA_P-fluviatile_contig12.1487.1 ID=mRNA_P-fluviatile_contig12.1487.1|Name=mRNA_P-fluviatile_contig12.1487.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig12:2279835..2280263+ (Porterinema fluviatile SAG_2381)
GCTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCGACCTCGGCC
TCGAATGCCTGCTCCTCCTCGCCCAACACCTTCTGCAGCTCGCGCCTGGA
CATCTCCTCCATCCGGCGCGTCTGCTCCTCCTCCCACCGTTCCTTCACAA
GCGAGTTGCAGATGTACTCCTGAACAATCTCCATCCCGCCAGTTTCAAGG
ACGGTCGCCAGCAGCGCCTCTTCCGGGTCAGGTGTTTCTCCGGGCCCCGG
TGCCTCCTCGGTGCCATGCATCTCCCGGGTCTGCTTCCGCGTGCGGCCAG
GCTCAAGCCCATGGCGCAGCGGGCCAGCACTGGACGCGCCCCAGAGGAGT
TTCTTCCCCTGTACCCCGGAGGGATAGCGGGCGTCGGCTGGATCATACTT
CAGCTCCTCGATATCACCGCCGCTATCATGCTGCGGGTCTGGTTGAGGTT
GCGAAGACCCGCTGCCGCCGACCTCGGCCTCGAATGCCTGCTCCTCCTCG
CCCAACACCTTCTGCAGCTCGCGCCTGGACATCTCCTCCATCCGGCGCGT
CTGCTCCTCCTCCCACCGTTCCTTCACAAGCGAGTTGCAGATGTACTCCT
GAACAATCTCCATCCCGCCAGTTTCAAGGACGGTCGCCAGCAGCGCCTCT
TCCGGGTCAGGTGTTTCTCCGGGCCCCGGTGCCTCCTCGGTGCCATGCAT
CTCCCGGGTCTGCTTCCGCGTGCGGCCAGGCTCAAGCCCATGGCGCAGCG
GGCCAGCACTGGACGCGCCCCAGAGGAGTTTCTTCCCCTGTACCCCGGAG
GGATAGCGGGCGTCGGCTGGATCATACTTCAGCTCCTCGATATCACCGCC
GCTATCAT
back to top