mRNA_P-fluviatile_contig12.1482.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1482.1
Unique NamemRNA_P-fluviatile_contig12.1482.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig12.1482.1 vs. uniprot
Match: D7FZV2_ECTSI (EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV2_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.380e-50
Identity = 100/146 (68.49%), Postives = 108/146 (73.97%), Query Frame = 2 
Query:  200 MPYMIHAVNMDIVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLHSYTKQTQEDVDLARRARELLARQEVASPGSSGIVHRA--------PSQGEGAAAGGVDGERQRRLGSCVGVGAARGVGNGDERDISDDRGVPVKPL 613
            MPYMIHAVNM IVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLHSYTK+TQEDVDLARRARELL    +A         RA          +G+         ERQR+LGSC G GA RGVG+GD  DISDDRG+PVKP+
Sbjct:  136 MPYMIHAVNMGIVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLHSYTKETQEDVDLARRARELLTNA-LADGADKRWRRRALLVLCIARHRRGKAQLLDFWGRERQRQLGSCGGAGAGRGVGSGDLEDISDDRGIPVKPI 280
[Close]
BLAST of mRNA_P-fluviatile_contig12.1482.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-6
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 2 
Query:  611 LDGTHVTPNTPDFRDTRQARDWASKAG 691
            LDGTHVTPNTPDFRDTRQARDWA +AG
Sbjct:  384 LDGTHVTPNTPDFRDTRQARDWADRAG 410
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZV2_ECTSI1.380e-5068.49EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVS7_ECTSI1.120e-692.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2261775..2263526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size693
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1482.1prot_P-fluviatile_contig12.1482.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2261974..2263526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.369848-UTR-P-fluviatile_contig12:2261774..22619731622815518.369848-UTR-P-fluviatile_contig12:2261774..2261973Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2261775..2261973 +
1693562118.4333003-UTR-P-fluviatile_contig12:2261774..22619731693562118.4333003-UTR-P-fluviatile_contig12:2261774..2261973Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2261775..2261973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.384949-CDS-P-fluviatile_contig12:2261973..22623831622815518.384949-CDS-P-fluviatile_contig12:2261973..2262383Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2261974..2262383 +
1693562118.4412382-CDS-P-fluviatile_contig12:2261973..22623831693562118.4412382-CDS-P-fluviatile_contig12:2261973..2262383Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2261974..2262383 +
1622815518.398456-CDS-P-fluviatile_contig12:2263444..22635261622815518.398456-CDS-P-fluviatile_contig12:2263444..2263526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2263445..2263526 +
1693562118.4487705-CDS-P-fluviatile_contig12:2263444..22635261693562118.4487705-CDS-P-fluviatile_contig12:2263444..2263526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2263445..2263526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1482.1

>prot_P-fluviatile_contig12.1482.1 ID=prot_P-fluviatile_contig12.1482.1|Name=mRNA_P-fluviatile_contig12.1482.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=164bp
MPYMIHAVNMDIVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLH
SYTKQTQEDVDLARRARELLARQEVASPGSSGIVHRAPSQGEGAAAGGVD
GERQRRLGSCVGVGAARGVGNGDERDISDDRGVPVKPLDGTHVTPNTPDF
RDTRQARDWASKAG
back to top

mRNA from alignment at P-fluviatile_contig12:2261775..2263526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1482.1 ID=mRNA_P-fluviatile_contig12.1482.1|Name=mRNA_P-fluviatile_contig12.1482.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1752bp|location=Sequence derived from alignment at P-fluviatile_contig12:2261775..2263526+ (Porterinema fluviatile SAG_2381)
TCATTCACACCGCTTCATTGGACGTCGGACAAGACCACGGTGGATCTACC
CATCGAGGCTGGGGCCAACATCGAAGCTCGGGAGGTAGGAGGCAGCACGC
CTCTTAATTGTACTCACGAATTGGACGAAATCTGCGCCCTCGTGAACCAC
GGTGCAAACTTCAATACACAGGATAAGGACGGCCGCACGCCTTTGCACAA
TGCCCTACATGATCCATGCTGTTAATATGGACATCGTCGAGATAGTGGAG
TTCTTGCTGAAGTCAGGCGCAGACGAGACCGTGGTTGACAATGAAGGCAA
GACAGCCATGCAGAGATTGGATGGAGGTATACTACATCCAAATTTACATT
CTTACACCAAACAAACACAAGAGGACGTAGACCTTGCCAGGCGCGCACGC
GAGCTTCTGGCTCGACAAGAGGTGGCGTCGCCGGGCTCTTCTGGTATTGT
GCATCGCGCGCCATCGCAGGGGGAAGGCGCAGCTGCTGGAGGGGTGGATG
GGGAACGCCAGCGACGACTGGGCTCATGTGTCGGCGTGGGTGCTGCACGC
GGGGTTGGGAATGGGGATGAAAGGGATATTTCGGATGATCGTGGGGTACC
TGTGAAGCCGTGAGTTAATGGGGGTTTTGGTGGCGCTGCTCGAAGCTTGA
ATAGTTTGGTTCGTGTTTTGTTTTCCCAGCCGCGAACATTATTTTTGATA
AGCAACTTGGCTGCCTTGTGGAGGGCCGATTCTCCCCCGCCGGAACAGTC
GGGCGACAGGTGGCAATGCGCGACGTTGATCTTGCCCTGTTTCAGTACCC
AACTTGTGGGCACATTCGAGGCACGTGAATGGGCCCTCGGTTTTGGAACA
GGAAGGCACGACCAGTTTGCCTGATGGGGTTTGGGCCACGGGGATGTGGA
TGGGGCATTGTGGTTTGATTTGAAACAACATTTTAATTTGACGGAGGTGG
GGCGCAGTCGGGTGTACGCTAAGCTACACTTTGCCTCGCTTGCTCTCGAG
CAAGGGTCAACTGGTCTCGCACGTCGTAAACCTTCTCCCCGGCCGCCACC
ATTGCGCTGTCAATCAGGTCTTCTAGGTGATCGAACCCTGTCAGCTCCTT
GATTTGGCTCGCGCACATGTCCTTCGACTTTTTTACGTCGGCCATCGGGA
TACCAAGCTGCGGAAGCAACTGGGCCGCGTACACGCCCCGATTACGCACA
TAGCTTTTCATGTCGAAGGCTTTGCATACCGGGCATTCCGGGAGAGACTG
TTTCCAATTGCAATCAGCGCAACACATTGCGTGGCACGTGGGGCAGGGGC
GTGCATACGCCGATTTCGTTATACGTTCGAAGCAAATGACACACTCTAGG
GATTGCTGCTTTGAGAGTAAAAGCTCCCACTCCCTCAACGTCTTGGGCTT
GTCGGACTTGCTGATGTAGTAAATCAGGCTGTCCCTTGCGCGTATGCCCT
TCCTCGTGACGTCTAAATCATCTGTATGCCTTGTTGTACCGCCTTTTTTG
TCCCTCTGTTGCCCCTGTTTCATGTTCTCCTCACTCTCACCGCCTTCCTC
TCGGTATGGTTCTACCTTTTTCTCTTTGCCGTCCTGAAAAGGCACCGGCC
AACGTGGAAACGAATCTCCTCCCGTACTGACCTGCCCCTCGCTTGAATCC
CCTTCCCTCCTTCTGTCCAGACTTGACGGCACGCACGTTACCCCCAATAC
GCCGGACTTCCGAGACACGCGACAAGCGCGGGACTGGGCGAGCAAGGCCG
GC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:2261775..2263526+

>mRNA_P-fluviatile_contig12.1482.1 ID=mRNA_P-fluviatile_contig12.1482.1|Name=mRNA_P-fluviatile_contig12.1482.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=984bp|location=Sequence derived from alignment at P-fluviatile_contig12:2261775..2263526+ (Porterinema fluviatile SAG_2381)
ATGCCCTACATGATCCATGCTGTTAATATGGACATCGTCGAGATAGTGGA
GTTCTTGCTGAAGTCAGGCGCAGACGAGACCGTGGTTGACAATGAAGGCA
AGACAGCCATGCAGAGATTGGATGGAGGTATACTACATCCAAATTTACAT
TCTTACACCAAACAAACACAAGAGGACGTAGACCTTGCCAGGCGCGCACG
CGAGCTTCTGGCTCGACAAGAGGTGGCGTCGCCGGGCTCTTCTGGTATTG
TGCATCGCGCGCCATCGCAGGGGGAAGGCGCAGCTGCTGGAGGGGTGGAT
GGGGAACGCCAGCGACGACTGGGCTCATGTGTCGGCGTGGGTGCTGCACG
CGGGGTTGGGAATGGGGATGAAAGGGATATTTCGGATGATCGTGGGGTAC
CTGTGAAGCCATGCCCTACATGATCCATGCTGTTAATATGGACATCGTCG
AGATAGTGGAGTTCTTGCTGAAGTCAGGCGCAGACGAGACCGTGGTTGAC
AATGAAGGCAAGACAGCCATGCAGAGATTGGATGGAGGTATACTACATCC
AAATTTACATTCTTACACCAAACAAACACAAGAGGACGTAGACCTTGCCA
GGCGCGCACGCGAGCTTCTGGCTCGACAAGAGGTGGCGTCGCCGGGCTCT
TCTGGTATTGTGCATCGCGCGCCATCGCAGGGGGAAGGCGCAGCTGCTGG
AGGGGTGGATGGGGAACGCCAGCGACGACTGGGCTCATGTGTCGGCGTGG
GTGCTGCACGCGGGGTTGGGAATGGGGATGAAAGGGATATTTCGGATGAT
CGTGGGGTACCTGTGAAGCCACTTGACGGCACGCACGTTACCCCCAATAC
GCCGGACTTCCGAGACACGCGACAAGCGCGGGACTGGGCGAGCAAGGCCG
GCACTTGACGGCACGCACGTTACCCCCAATACGCCGGACTTCCGAGACAC
GCGACAAGCGCGGGACTGGGCGAGCAAGGCCGGC
back to top