mRNA_P-fluviatile_contig12.1480.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1480.1
Unique NamemRNA_P-fluviatile_contig12.1480.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1480.1 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.310e-16
Identity = 128/173 (73.99%), Postives = 134/173 (77.46%), Query Frame = 1 
Query:  310 DEIHGRGRLTICPGSILEEIYDXXXXXXXXXXXGIYVYRKGDGMVXXXXXXXXXXXXXXLLRFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGTKGRFTLLTGHAHEDKVHLKVFGY 828
            DEIHGRGRLTICPGSILEE+YD           G+YVYRKGDG+VXXXXXXXXXXXXXXLLRFA                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    V+GTKGRFTLLTG AHED+VHL+VFGY
Sbjct:  787 DEIHGRGRLTICPGSILEEVYDGDFVRGIKHGNGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADDSFYKGQFHRERKHGTGCMVWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 959
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BLAST of mRNA_P-fluviatile_contig12.1480.1 vs. uniprot
Match: A0A6H5KQH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-12
Identity = 140/168 (83.33%), Postives = 146/168 (86.90%), Query Frame = 1 
Query:  325 RGRLTICPGSILEEIYDXXXXXXXXXXXGIYVYRKGDGMVXXXXXXXXXXXXXXLLRFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGTKGRFTLLTGHAHEDKVHLKVFGY 828
            RGRLTICPGSILEE+YD           G+YVYRKGDG+VXXXXXXXXXXXXXXLLRFA X    XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    V+GTKGRFTLLTG AHED+VHL+VFGY
Sbjct:  192 RGRLTICPGSILEEVYDGDFVRGIKHGHGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADXSFYKXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 359
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWY6_ECTSI6.310e-1673.99MORN repeat variant family protein n=1 Tax=Ectocar... [more]
A0A6H5KQH2_9PHAE1.090e-1283.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2216323..2220921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1292
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1480.1prot_P-fluviatile_contig12.1480.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2216731..2220778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.7360601-UTR-P-fluviatile_contig12:2216322..22167301622815486.7360601-UTR-P-fluviatile_contig12:2216322..2216730Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2216323..2216730 -
1693562045.235427-UTR-P-fluviatile_contig12:2216322..22167301693562045.235427-UTR-P-fluviatile_contig12:2216322..2216730Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2216323..2216730 -
1622815486.7958288-UTR-P-fluviatile_contig12:2220778..22209211622815486.7958288-UTR-P-fluviatile_contig12:2220778..2220921Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2220779..2220921 -
1693562045.3041794-UTR-P-fluviatile_contig12:2220778..22209211693562045.3041794-UTR-P-fluviatile_contig12:2220778..2220921Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2220779..2220921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.74934-CDS-P-fluviatile_contig12:2216730..22168871622815486.74934-CDS-P-fluviatile_contig12:2216730..2216887Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2216731..2216887 -
1693562045.2544916-CDS-P-fluviatile_contig12:2216730..22168871693562045.2544916-CDS-P-fluviatile_contig12:2216730..2216887Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2216731..2216887 -
1622815486.7592602-CDS-P-fluviatile_contig12:2217303..22174371622815486.7592602-CDS-P-fluviatile_contig12:2217303..2217437Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2217304..2217437 -
1693562045.2713053-CDS-P-fluviatile_contig12:2217303..22174371693562045.2713053-CDS-P-fluviatile_contig12:2217303..2217437Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2217304..2217437 -
1622815486.770791-CDS-P-fluviatile_contig12:2218272..22184241622815486.770791-CDS-P-fluviatile_contig12:2218272..2218424Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2218273..2218424 -
1693562045.2794363-CDS-P-fluviatile_contig12:2218272..22184241693562045.2794363-CDS-P-fluviatile_contig12:2218272..2218424Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2218273..2218424 -
1622815486.780983-CDS-P-fluviatile_contig12:2220480..22207781622815486.780983-CDS-P-fluviatile_contig12:2220480..2220778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2220481..2220778 -
1693562045.2881298-CDS-P-fluviatile_contig12:2220480..22207781693562045.2881298-CDS-P-fluviatile_contig12:2220480..2220778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2220481..2220778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1480.1

>prot_P-fluviatile_contig12.1480.1 ID=prot_P-fluviatile_contig12.1480.1|Name=mRNA_P-fluviatile_contig12.1480.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=247bp
MVHKHAVIPPKRPPPIGSKIVLPTHKYRCCLPPKKLNVDEGQVRRRKRVP
RRVLRGRDPREGTADNLPGLYPGGNLRRGIRSRGEARARNLRLPQGRWHG
LRWRLGRRAKARSGSAALRGRFILQGTVPPREEARDRLHGVDGRFAVPRT
VGSQLKTRRRNSPPRRRKHLSGAISARQKDRPGDGHFLGRQLLRRGVGGR
QGRGHQRQIHAAHGTRARGQGTPQGFRLLNSSFVASREENLHTESH*
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mRNA from alignment at P-fluviatile_contig12:2216323..2220921-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1480.1 ID=mRNA_P-fluviatile_contig12.1480.1|Name=mRNA_P-fluviatile_contig12.1480.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4599bp|location=Sequence derived from alignment at P-fluviatile_contig12:2216323..2220921- (Porterinema fluviatile SAG_2381)
AGGGTGCCCTCCAAAGAGTTCGAAGGGTGCAAAAGAGTCCCATCATTTAC
GCCGTTACCAACCCCTATTTGTACCAATTCGGTTGGTGTACTACTCCACA
TGTCCTGCGGCGAAGAAGTGTGAACGATACGAGGATCTGGCACATGGTAC
ACAAACATGCGGTCATTCCTCCCAAGAGGCCGCCCCCTATCGGCAGTAAG
ATCGTCCTCCCTACCCACAAATATCGTTGCTGCCTGCCTCCGAAAAAATT
GAACGTCGATGAAGGGCAGGTACGCCGACGGAAACGTGTACCACGGCGAG
TTCTTCGAGGACGAGATCCACGGGAGGGGACGGCTGACAATTTGCCCGGG
CTCTATCCTGGAGGAAATCTACGACGGGGAATTCGTTCGAGGGGTGAAGC
ACGGGCGCGGAATCTACGTTTACCGCAAGGGAGATGGCATGGTGAGAGCG
AGGGGGGGGGGGGTGCTTGCGAATTGCCTGGTGCTGGTGCTGCCTGCTGC
CGCCGTTTTTAGTTTTGTCATTAGAGCGTTGTTCGGTTCCGTGAACGTGC
CGTCGGATGTAGCTGGAAAGTGCAAGAGATGAGAAAGTCAGTGGGACCTT
CTATGTATTCGACAGCAACCTCCTGAGTGGTAAGGTTTGTACGTTTGACT
GGAAGGTGCGCGTGGGGGTACAATATTTCATTTGGTTTATTCCTGAGGGA
AACAACGACGCAATGTCACGGGAAAGGGATCGCGCTTTTTTTCATAGTGC
ATGACCGAGCCTTCGGATCACAGAGCCTTGCGTTCCTCGAAGGCTAAGGA
AAGAGTAAGCCGTATATTAACCGAACCTTATACCAAAAATTCGTTTTGCG
AGCTGCACTAAACGGGTGGGATCGGTCCAACGAACCGGTGGTGACACAGG
CTTTCGTCACTTGGACGATTTCCTTCCATCATGTCGTGAAGATAGCAAGT
ACATTGGGGGGGCCTGTGCAGTGCGGATTGAGTAGAGCAGGTCTCGGTAT
TGTGCGGATGAAAGCAGTTTGTATGTAAGCTCTCTCGCATGCTAAAATCC
ACACATTACCCACTTCTGCACGGTGCGGGTGCCCGCTTTAGTGCGGGTGA
AGAATCCCATCCCACCTCGCACAATAGAGGCCCCCCTGCGGCATCCAATG
GCATCTCGCCAAAGCATGCGTTAGGTGAAGGCAGGACGTGATACCGTACT
CATTGGCCCGATTTTCAGGGCTTGTTATTGTTGTTTGCTTGGAATCCACA
AGTTATATTACCTGTGAATTTGGAATTGATTCAATAGGAAAGGGTAGGGA
CATTTGAAAGTACTGGAGATGATCGGTAAGGCTGTCGTGTGATGGAAGAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ATGACAACATGTCAGTGCGGAGGCCGCTACCGATAGACACGTTTGTGGTT
GCAAGTCCTCGCGATGACATCACTCTATTACTACCCACCTTTGCCGGCGT
CGACACCCCGCTTTTCGTGCGAAGAGGGCGCCGTTTGAGAATCGGTTCAC
GGGCTGCGGTACCCTGAGAGCAAATACTTGCTTTTGCAGCTGCCTGGCGC
TTGGCTGTCTGGTAGCACCCGCGAACGTCATGATACCACTACGCTCGTTG
CAGACACGAGATGTTACGCTCCCTGGACCGTCTACACAAGCTGTGTTGCT
TAACAAGAACCTTGATGACGCACAAGTCGGTGGAGATAAATTTCGTCACC
AGTACCTTTCCCTCCGCGTATCGTCAGGCGTAAGCACGTTCCATGATAAG
GAGTGGTGAAGCGTTGGTGCCAATCGGTCCAGGGACGTGTGGTGTCTTGT
GTTATAATCCCCATGGCGAAAAATTGGGGTTCACCAGCCCGCCAAATATT
CATTGACCGCATGAATCGCCTCTCCACATTTTCACGGGCAGAAGTTGAGG
CTTTTATGGACCTGCAACGCGATCTCTTGAGCATAGCTGCAAGGGGGGCA
CAGATTGCGGCAAATACTTAGTCGACGAACCACCCCAATGAACCACAGAA
TAGTGGGGTACTGGGTCCCACCCCTGTCGTGGTGTGGCAAGAAGGTGAGA
CACGATAATACTCCGACACAAATACTCCAGCAAGCTTCCAAGCCGAAGGC
GCGCATGTCAAACAGGGCCAGGGGGCACGGGATAAGGGGGCGTAGGGCAC
AGACAGTATCGCAGGGGGGGCGGAGCTATCACCGGCGCCTCGGAAAAGCC
TGCGATAGATGAAAGCGTGACCTCCTCGTCTCAGATCAGGGTCGAGGCGC
GGGATATTCTGTGGTGGAGTGGTAAACTCCATGAACCGAGCACATGTCAC
GAAATTGCATAAAACCCATCAGCCCTCCCCCGAAGTCAAACGCAGGTGTT
TTCCATTTGGTGGTACACTAGTGTACGGACAACATGCAACGAAAACTCGT
AGGCATTTGTCCCATACTACCTCACATACATCCCGAAACAAACCCAGGTT
TACGATGGCGATTGGGACGACGGGCTAAGGCACGGTCAGGGTCTGCTGCG
CTTCGCGGACGGTTCATTCTACAAGGGACAGTTCCACCGCGAGAGGAAGC
ACGGGATCGGCTGCATGGTGTGGACGGACGGTTCGCAGTACCAAGGACGG
TGAGTGTGCGTATAGTGTGAGGGTTGTGAGGTAAGGTTGTGACAGACTAG
TGTCCCGTGTCCCGCGTCCCGTGAATTTCACCAGTACGACCGTATACTAG
GTTGTATACAACGCCCCTCGAGGTCATCTTCCAAGATCGAATGATGCAAC
ACAGAAAGATGGGTGGCGAGGCCTTAAGCCTACTCAAGGGCGGCTTTGGG
ATGGTTTGGTCGAATTATCGCCGGCGACTTCATGGTCGGCGTTGGAACGC
GCTGGGTCTTGTTGCAATCGAGCATTTAATCGGCTTTCCGGGGTCTGGTA
GACACCGTCATATACGGTGATATGAAGCTATGGTTTATTGATTGATCCCA
TTAGCACAGGGGCGCAACAATGGCACTTTACGATGGTGTGAACACGACAC
AATGCTCCAACTACAGCTTAGCTGATCAGGAAAAATTGTCCCGACAGCCG
GTAACAAGCGTCGCGGTCAATGCAGTCCGACGGCAGCGCGAAATGCTCTG
AGAACAAGCCTCGAATCGCGAACCAATATCTTAACGCTCACCGACAGTAC
CGACGGACGCCACCGCGCAACAAGGTGCTACCCGGCAATGCTGGCTGTCC
TTGACACCAACGCGGTTAACGCTGCACTCTCAAAATTTGGAGATGCGGCA
ATCTGTTGGTTGCACACCAGCTTTTGTCGGATACAGCTGTCAACACAACT
GTTTCTTTCAGCCAGTGCTGTTCTTGATGGCTACGTGAAGCTTTGCAGCT
GAACAGCAGTGCAAATCCATACAATCGGCTTTTTGTTTTCTCAACAACTT
TCCCCGCCCCCCCTTCCCCCACCGCTCCTTACAGGTGGGCTCTCAACTTA
AGACACGGCGAAGGAACTCTCCTCCACGCAGACGGAAGCATCTTTCGGGG
GCGATTTCAGCTCGACAAAAAGACCGGCCCGGGGACGGTCACTTCCTTGG
ACGGCAGCTGTTACGAAGGTAAGTGCCCTGGAGATAAACATTCCGAGGTC
GCAGTACGTCGAAGAAGGGCGACTCGCACTGCGTACGTTGCGTTGGCTGC
CGTCCAAACCACGTGGAGCAAGACGAGGAGCGGAAGCACGAGCGAAACCT
TGCGGGATAGAATTATCGTACAAGAGAATGGGTACCTGGAATTTGGCCGC
CAGTTGCAGCCATGCAGAGCCGTGGAAACCTTCCAATCGTAGACTGAAAA
CGGTGGCCGGAGGGTGAGACAAGCAATAGTGAAAAGTGAGAAGTTGCAGG
CGAGCATTGACTTTTTTGCATCGCTGTACGACCGCCATCTCGCACGCCTC
TCTTGTTGGCCACCTACTCCCACCTTTCCTGAAACAGCTTTAACTCCTTT
CCCGGCCGAACTTTCGTCGATCCACGACCGGCAGGGGAGTGGGAGGACGA
CAAGGTCGTGGGCACCAAAGGCAGATTCACGCTGCTCACGGGACACGCGC
ACGAGGACAAGGTACACCTCAAGGTTTTCGGCTACTAAACTCAAGCTTTG
TCGCCTCGAGGGAGGAGAACTTACATACGGAAAGCCATTAGATGTCAAGA
CGGCGAGCACCAAACAGGCCAATCAGCCCTGGTTACCAGGAAAGTCGGTA
GGGGGGTTACATCGCTGCCGACCCTACTAGTAGCTCCATGCCTGGGGACT
TGGCCAGCCGGGTGTAAAATATTGGAAGCCATTGCTTGCGAAGTAAATGA
GCTTTTCAAAAAATCTTCCCTATCTACGCCCCGGATTTCGAAAGTGACCA
GGAGGGCGGGAAATGATGGCGGAGCCCAGCACCCATTTGAAGTCGTCACA
ACTCAAGCTACAGCGGTTCTTAACGACTGAGCCCCACCCAGCATTTTCTC
GTGGTACCGCCTGGCATGGACGCACACACCGGCTCGATGTACCTCAGCGA
CGGGTGTTGAGGGTCTCGATGCCGTCCCCTGCTTCTTCAATATCTTGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2216323..2220921-

>mRNA_P-fluviatile_contig12.1480.1 ID=mRNA_P-fluviatile_contig12.1480.1|Name=mRNA_P-fluviatile_contig12.1480.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1482bp|location=Sequence derived from alignment at P-fluviatile_contig12:2216323..2220921- (Porterinema fluviatile SAG_2381)
ATGGTACACAAACATGCGGTCATTCCTCCCAAGAGGCCGCCCCCTATCGG
CAGTAAGATCGTCCTCCCTACCCACAAATATCGTTGCTGCCTGCCTCCGA
AAAAATTGAACGTCGATGAAGGGCAGGTACGCCGACGGAAACGTGTACCA
CGGCGAGTTCTTCGAGGACGAGATCCACGGGAGGGGACGGCTGACAATTT
GCCCGGGCTCTATCCTGGAGGAAATCTACGACGGGGAATTCGTTCGAGGG
GTGAAGCACGGGCGCGGAATCTACGTTTACCGCAAGGGAGATGGCATGAT
GGTACACAAACATGCGGTCATTCCTCCCAAGAGGCCGCCCCCTATCGGCA
GTAAGATCGTCCTCCCTACCCACAAATATCGTTGCTGCCTGCCTCCGAAA
AAATTGAACGTCGATGAAGGGCAGGTACGCCGACGGAAACGTGTACCACG
GCGAGTTCTTCGAGGACGAGATCCACGGGAGGGGACGGCTGACAATTTGC
CCGGGCTCTATCCTGGAGGAAATCTACGACGGGGAATTCGTTCGAGGGGT
GAAGCACGGGCGCGGAATCTACGTTTACCGCAAGGGAGATGGCATGGTTT
ACGATGGCGATTGGGACGACGGGCTAAGGCACGGTCAGGGTCTGCTGCGC
TTCGCGGACGGTTCATTCTACAAGGGACAGTTCCACCGCGAGAGGAAGCA
CGGGATCGGCTGCATGGTGTGGACGGACGGTTCGCAGTACCAAGGACGGT
TTACGATGGCGATTGGGACGACGGGCTAAGGCACGGTCAGGGTCTGCTGC
GCTTCGCGGACGGTTCATTCTACAAGGGACAGTTCCACCGCGAGAGGAAG
CACGGGATCGGCTGCATGGTGTGGACGGACGGTTCGCAGTACCAAGGACG
GTGGGCTCTCAACTTAAGACACGGCGAAGGAACTCTCCTCCACGCAGACG
GAAGCATCTTTCGGGGGCGATTTCAGCTCGACAAAAAGACCGGCCCGGGG
ACGGTCACTTCCTTGGACGGCAGCTGTTACGAAGGTGGGCTCTCAACTTA
AGACACGGCGAAGGAACTCTCCTCCACGCAGACGGAAGCATCTTTCGGGG
GCGATTTCAGCTCGACAAAAAGACCGGCCCGGGGACGGTCACTTCCTTGG
ACGGCAGCTGTTACGAAGGGGAGTGGGAGGACGACAAGGTCGTGGGCACC
AAAGGCAGATTCACGCTGCTCACGGGACACGCGCACGAGGACAAGGTACA
CCTCAAGGTTTTCGGCTACTAAACTCAAGCTTTGTCGCCTCGAGGGAGGA
GAACTTACATACGGAAAGCCATTAGGGGAGTGGGAGGACGACAAGGTCGT
GGGCACCAAAGGCAGATTCACGCTGCTCACGGGACACGCGCACGAGGACA
AGGTACACCTCAAGGTTTTCGGCTACTAAACTCAAGCTTTGTCGCCTCGA
GGGAGGAGAACTTACATACGGAAAGCCATTAG
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