mRNA_P-fluviatile_contig12.1478.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1478.1 vs. uniprot
Match: D8LQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ22_ECTSI) HSP 1 Score: 516 bits (1330), Expect = 7.880e-172 Identity = 364/706 (51.56%), Postives = 424/706 (60.06%), Query Frame = 1
Query: 1 MAILMAKCERFRQAYSDYQASKEQGRHLSTDNLSFVAGLRGRPVPAPVADIGRHRARRRPKVDSLEAEGDEAADGSDEGDKRSLEETQAGRQACQGRSCAARAELLDSMVEKRVAAQTARHKMQLKLVLARERLQEAETKLEEATAELGRMSKAITEGTERTVSLQDMLRDEDSINKGFADDLNVFLVEAMNLRREFTAGTMPPRPTNPVLPPKDVGEDDDDAPVYEEDGRTLAPPIAAPGQQLLGQQPGREGDATAGXXXXXXXAHSGSREWVHSGKLDHTSVFSRPPRPKSR---VGDGGXXXXTAPAAGASGHSAKGAKQKWFGAVAFAVASARSAXXXXARDGGDDGTPSEAGPGAGVEAEAGVSATERGGRGSSRHEAAEDAWSCCGKSLASAGRGCEPREPLATPKDLLLDTIDPRSRIGQPLDFREFLPRTAWMGLSPKPEHAFAGYQSEGSVRPHTAPERLPGSSSLGKWSPSGRGPGAGMRAGXXXXXXXXXAEYRRSATRSRNGGLVGGVWASGEERXXXXXXXXXXXXXXXSPTXXXXXXXXXXINAGCQHETAVHQR-------KXXXXXXXTVGERCGSGGGSMLRFAKRQEFFRRSRPAATTATHTSTLI-SAGNGRSSATRLPRPRGGGSTSRPGTAIYAAAAADGFWPRTQILGMNGGRLPRQVRQAPVDRPLTAPCGSVGRRTVRSSDG 2085
MA+LMAKCER RQAYSDY+ HLSTDNLSFVAGLRGRPVPAP AD+GR + RRRPK D + D S E+Q +QAC RSCA R + L++M EKRVAAQTAR K Q +L ARER QEAETKLEEA AEL RM+KAI EG ERT +LQD LR+E SINK A++L++ LVEAMNLRREF T+PPRPT V+ P D GE+D+DAP Y+EDGR+L P+ APGQQLL + G +G XXXXX H GSREW+HSG+L HT +F RPPRPKSR XXXX XXXX D T + G G GVEAEA +A + GG R E EDAWSCCGK + SAGRGCEPREPLATP+DLLLDTIDPRSR+GQPLDFR+FLP+ AW+GLSP P G +G++RPHTAPERL + + G+WSP G G R EY R A+RSRNGGLVGGVWASG R + +N +++T HQR XXXXXXX R +G +L KR F RRS P ATTAT+ S+ + N + T AA D FWPRTQILGMNGGRLP +VRQ P+DRPLTAPCG VGRR VR+ G
Sbjct: 1 MAVLMAKCERLRQAYSDYK-------HLSTDNLSFVAGLRGRPVPAPGADLGRCKVRRRPKPDDVPKSEDXXXXXXX---XDSSLESQGAKQACPSRSCAPRVDKLEAMTEKRVAAQTARQKAQSRLGSARERSQEAETKLEEAKAELVRMTKAIAEGDERTEALQDTLRNEGSINKAVAEELDMLLVEAMNLRREFVVDTLPPRPTT-VIVPVDEGEEDNDAPSYQEDGRSLESPVIAPGQQLLARDGGGKGXXXX---XXXXXPHDGSREWIHSGRLAHTGIFVRPPRPKSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAATGRDGGEGVGVEAEA--AAGDYGGGSKGRSEG-EDAWSCCGKPVLSAGRGCEPREPLATPEDLLLDTIDPRSRLGQPLDFRDFLPQIAWLGLSPDPVRPLPGSPGDGTLRPHTAPERL--TDAAGQWSPQGWAGGDANR------------EYDRRASRSRNGGLVGGVWASGGRRRRGPGGGLGVAHPPSLDSG---------VNTWWKNKTP-HQRGGRXXXXXXXXXXXXXXXSRTEAGEAPLL--PKRHAFLRRSHPTATTATYASSRSGTTRNNGDARTXXXXXXXXXXXXXXXXXXXXAAGVDEFWPRTQILGMNGGRLPTRVRQVPIDRPLTAPCGKVGRRRVRTRGG 663 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1478.1 >prot_P-fluviatile_contig12.1478.1 ID=prot_P-fluviatile_contig12.1478.1|Name=mRNA_P-fluviatile_contig12.1478.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=707bp MAILMAKCERFRQAYSDYQASKEQGRHLSTDNLSFVAGLRGRPVPAPVADback to top mRNA from alignment at P-fluviatile_contig12:2163953..2174427+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1478.1 ID=mRNA_P-fluviatile_contig12.1478.1|Name=mRNA_P-fluviatile_contig12.1478.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=10475bp|location=Sequence derived from alignment at P-fluviatile_contig12:2163953..2174427+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:2163953..2174427+ >mRNA_P-fluviatile_contig12.1478.1 ID=mRNA_P-fluviatile_contig12.1478.1|Name=mRNA_P-fluviatile_contig12.1478.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=4242bp|location=Sequence derived from alignment at P-fluviatile_contig12:2163953..2174427+ (Porterinema fluviatile SAG_2381)back to top |