mRNA_P-fluviatile_contig12.1475.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1475.1
Unique NamemRNA_P-fluviatile_contig12.1475.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1475.1 vs. uniprot
Match: D8LQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ19_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.420e-37
Identity = 135/348 (38.79%), Postives = 160/348 (45.98%), Query Frame = 1 
Query:  391 MRDFERIAAENTRRALLENDAQL-CEPPSMQXXXXXXXXXXXXXXXXXSVDXXXXXCGRQEGE---GMRRRRRLRFVPGDPFANEDADVDAWARHFTYLSVIPGGRVGGGGPARGKNGDGISGSSRNNG------------------------NDSLLPGTNPPHAAS---GEMEVEAEEAAEVFASHGVYEEYLAYDRRPPAFDDEXXXXXXXXXXXXXXXXXXQRGGSALGGGHGICFDSNRSVEGRGGTGPAGWLGGSSLCATAADXXXXXXXXXXXXXXXGLTSIKPASGASVTGAPRKARASRRPDTPQRELRQEIMERLFDELWERITPELTLLLALQQPAA 1341
            MR+FER +AENTR ALL+NDA L CEPP+                   S D      GRQ             LR+VPGDPFANE+ADV AWA+HFTYLSV+P  R G GG A  ++ D   G     G                          S +    P  AA+   G    E  +  EVFASHGVYEEYLAYD RPP FDD                    +G  A     G+  ++N +V      G   W+  ++                         S  PA GAS TG   +  A  R DTPQRELRQEIM+RLFDELWERITP+L L+L  QQ AA
Sbjct:   57 MREFERSSAENTREALLDNDALLLCEPPASANAG--------------SADND----GRQTSPLSPXXXXXVPLRYVPGDPFANEEADVGAWAKHFTYLSVVPTER-GEGGDAEKRSNDNAGGGLLERGPVAEPPPVRDVMETDEETGGVAAVEGSRIQDLTPEEAAAELAGRRLEEMPQGEEVFASHGVYEEYLAYDCRPPGFDDVTSPGGETMGPGEEDPRLAAKGSGAWAV-TGVVPNANSAV------GQGAWVSNNAA------------------------SEPPALGASTTGGSHRVVA--RLDTPQRELRQEIMDRLFDELWERITPDLLLVLRQQQAAA 352
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ19_ECTSI1.420e-3738.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2143155..2145595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001280.1
Exons1
Model size2441
Cds size1056
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1475.1prot_P-fluviatile_contig12.1475.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2143545..2144600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.3731785-UTR-P-fluviatile_contig12:2143154..21435441622815517.3731785-UTR-P-fluviatile_contig12:2143154..2143544Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2143155..2143544 +
1693562108.9729726-UTR-P-fluviatile_contig12:2143154..21435441693562108.9729726-UTR-P-fluviatile_contig12:2143154..2143544Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2143155..2143544 +
1622815517.3952894-UTR-P-fluviatile_contig12:2144600..21455951622815517.3952894-UTR-P-fluviatile_contig12:2144600..2145595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2144601..2145595 +
1693562108.994829-UTR-P-fluviatile_contig12:2144600..21455951693562108.994829-UTR-P-fluviatile_contig12:2144600..2145595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2144601..2145595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.384161-CDS-P-fluviatile_contig12:2143544..21446001622815517.384161-CDS-P-fluviatile_contig12:2143544..2144600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2143545..2144600 +
1693562108.9817922-CDS-P-fluviatile_contig12:2143544..21446001693562108.9817922-CDS-P-fluviatile_contig12:2143544..2144600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2143545..2144600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1475.1

>prot_P-fluviatile_contig12.1475.1 ID=prot_P-fluviatile_contig12.1475.1|Name=mRNA_P-fluviatile_contig12.1475.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=352bp
MRDFERIAAENTRRALLENDAQLCEPPSMQQQQGDEEEEEEEKEDACSVD
SGGGGCGRQEGEGMRRRRRLRFVPGDPFANEDADVDAWARHFTYLSVIPG
GRVGGGGPARGKNGDGISGSSRNNGNDSLLPGTNPPHAASGEMEVEAEEA
AEVFASHGVYEEYLAYDRRPPAFDDEDEDDDDNDDEDDDEDESDQRGGSA
LGGGHGICFDSNRSVEGRGGTGPAGWLGGSSLCATAADATAAPAAAAAAA
AEAGLTSIKPASGASVTGAPRKARASRRPDTPQRELRQEIMERLFDELWE
RITPELTLLLALQQPAAATATPTRPGSGDIVRGAGAGLRHEPRLRDRMEE
E*
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mRNA from alignment at P-fluviatile_contig12:2143155..2145595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1475.1 ID=mRNA_P-fluviatile_contig12.1475.1|Name=mRNA_P-fluviatile_contig12.1475.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2441bp|location=Sequence derived from alignment at P-fluviatile_contig12:2143155..2145595+ (Porterinema fluviatile SAG_2381)
GGTTTTGTTGGAGGCCCTGGACGTCTTGAAATGTTCAATCCTTGCATCTT
CAGCAGTGCATCGGCCGAAAGCCGCTGAAAATCATGCCGCCACATTCATC
TCCGAAAGGAGGGATAGAGTTCTCTCCTCCAAACTCGAAAAAATTACGGG
CCTCCGAACTCCGTGTTTTCGCTCCTCACGCCTCCTTCTCGTATTTGGCT
CGCCTGTGCGGGCGAGTCTACTGTCGTTCCCCCGCAAACAAGCCTCTCGT
CGTCTTCTTCCGCTGGCGTCGACTTGAATCGCATCCCGCAGGGTGGGGTG
GCGGCACATTCCGCGACCGGCGGCTTCGACGACAGCAGCAGCAGCGGCGG
GGAAGGGGGGTGGGCAGGAGGAGGAAGGCGGGGCCGGAGCATGCGGGATT
TCGAGCGGATCGCGGCGGAAAACACGCGCAGAGCCTTGCTCGAGAACGAC
GCTCAGCTTTGCGAGCCGCCATCGATGCAACAACAGCAGGGAGACGAGGA
GGAGGAGGAGGAGGAGAAGGAGGATGCTTGCAGCGTCGATAGCGGCGGTG
GAGGTTGTGGTAGACAAGAGGGCGAAGGGATGCGGCGGCGGCGACGGTTG
CGATTCGTCCCCGGCGATCCTTTTGCCAACGAGGACGCCGACGTCGACGC
CTGGGCGAGGCACTTCACCTACCTCTCGGTGATTCCTGGCGGCCGGGTTG
GAGGAGGAGGTCCAGCAAGAGGGAAGAATGGCGATGGCATCAGCGGCAGC
AGTCGCAACAACGGGAATGACAGCTTGCTGCCTGGTACCAATCCCCCCCA
TGCTGCATCGGGTGAGATGGAAGTGGAGGCGGAGGAGGCGGCGGAGGTTT
TCGCAAGCCACGGCGTGTACGAGGAATACCTGGCATACGACCGTCGCCCT
CCGGCCTTTGACGACGAAGACGAAGACGACGACGACAACGACGACGAAGA
CGACGACGAAGACGAATCTGACCAACGAGGAGGCAGCGCCCTCGGCGGTG
GCCACGGCATCTGCTTCGATTCCAACAGAAGTGTCGAGGGTCGAGGAGGA
ACGGGGCCAGCAGGGTGGTTAGGGGGCTCTTCCCTATGTGCTACTGCTGC
CGACGCCACCGCCGCTCCTGCGGCTGCGGCTGCGGCGGCTGCGGAGGCCG
GTTTGACGAGCATCAAACCAGCGTCGGGTGCGTCGGTGACAGGGGCCCCT
CGGAAAGCGCGTGCGAGCAGAAGACCAGATACGCCGCAGCGCGAGCTCAG
GCAAGAGATCATGGAACGGCTGTTCGACGAGCTGTGGGAGCGGATCACTC
CGGAGCTGACGCTTCTGCTGGCGTTACAGCAGCCTGCCGCCGCAACAGCA
ACGCCCACCCGCCCGGGCAGCGGGGATATTGTTCGCGGAGCGGGAGCAGG
GCTACGGCACGAGCCGCGTTTGCGAGATCGCATGGAGGAGGAATGAGTAC
ATGATTTTGCTCATCGATGTAGTCATACAGTCGTCCCCGCTTTGAGGACA
CTTCCCTCGGCAAGAAGCAGGGGGTAACGATGAGAGTCCTCATCCACTGA
AACTTTAGTATACTTCCCCGCGTTAAGGGCAATCGCAACGAAAAGAGCAA
TATTCTCAAAGCGGGGTTGACGGTCCTCACTTGTATAGAGCGGTTGGTGC
TGGGTGTGAAGGCATGTATGTTTCCCGAGGGTTGAAATGTTCTGTGTATT
TAGGGGTGTGTGCTTCTCGAGGTGAAACGACATGTCGAAGGGGGAGAGGC
GACCGAGGGAATCGACTCCCTAAAAACTCTCCGCCACGATGCCTGCATAC
AATATACCGTTCCAGGTGCGTCGAGAAATCGGGGGACAGCGTGTCGATTC
TGTCGCCGAAACGCTTGCGCCTTAAAATGCGCGCCTACTCACTCATGCCT
GCCGTCTTTCTGACGTAGCTGGATTTCGGGCGCGCCCATTCTGAAAGTTT
CGCCTGCGCCTACGCAAAGCAACGACGAAGAACAAAGTGGGGGGGGGGAG
CCGAGAACGTTGATGTCCACGCGATTTCGCGATGACAGACTGTTGCGAGA
GAAACCCGAGGATCACCCTTTGAGGGCGTACGGAACGTGAGAATCGAGAC
GTGAAACGGGATGATTGCCAGCCAAAAGTCGGGCACGTTTCGGATTTCCG
CGACGTGCTGCAATCCTGAACTCGCGAATCCGTGAGCGTGATGGAGGGTG
CCAACCTTTTTTTGAGATTTCCCCGTCTTGTGCGTCGGCTCTCGCGGACA
CCAGAGCAGGCAACACAGAACACGGGATTGTTCTGCTTCTTCTCCGAGAA
AGAAGGAATTCCGCATGAGGCAGGGTGGGAGCTTGCACGTCGCTTTACCC
GGCTGAAGATGAAGATGGGCTGATCGTCGGCGCATGGGGCCGAGAGAAAC
GCGACAGGATGTCGCATACAGGGCACGAAATAATTAACTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2143155..2145595+

>mRNA_P-fluviatile_contig12.1475.1 ID=mRNA_P-fluviatile_contig12.1475.1|Name=mRNA_P-fluviatile_contig12.1475.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2112bp|location=Sequence derived from alignment at P-fluviatile_contig12:2143155..2145595+ (Porterinema fluviatile SAG_2381)
ATGCGGGATTTCGAGCGGATCGCGGCGGAAAACACGCGCAGAGCCTTGCT
CGAGAACGACGCTCAGCTTTGCGAGCCGCCATCGATGCAACAACAGCAGG
GAGACGAGGAGGAGGAGGAGGAGGAGAAGGAGGATGCTTGCAGCGTCGAT
AGCGGCGGTGGAGGTTGTGGTAGACAAGAGGGCGAAGGGATGCGGCGGCG
GCGACGGTTGCGATTCGTCCCCGGCGATCCTTTTGCCAACGAGGACGCCG
ACGTCGACGCCTGGGCGAGGCACTTCACCTACCTCTCGGTGATTCCTGGC
GGCCGGGTTGGAGGAGGAGGTCCAGCAAGAGGGAAGAATGGCGATGGCAT
CAGCGGCAGCAGTCGCAACAACGGGAATGACAGCTTGCTGCCTGGTACCA
ATCCCCCCCATGCTGCATCGGGTGAGATGGAAGTGGAGGCGGAGGAGGCG
GCGGAGGTTTTCGCAAGCCACGGCGTGTACGAGGAATACCTGGCATACGA
CCGTCGCCCTCCGGCCTTTGACGACGAAGACGAAGACGACGACGACAACG
ACGACGAAGACGACGACGAAGACGAATCTGACCAACGAGGAGGCAGCGCC
CTCGGCGGTGGCCACGGCATCTGCTTCGATTCCAACAGAAGTGTCGAGGG
TCGAGGAGGAACGGGGCCAGCAGGGTGGTTAGGGGGCTCTTCCCTATGTG
CTACTGCTGCCGACGCCACCGCCGCTCCTGCGGCTGCGGCTGCGGCGGCT
GCGGAGGCCGGTTTGACGAGCATCAAACCAGCGTCGGGTGCGTCGGTGAC
AGGGGCCCCTCGGAAAGCGCGTGCGAGCAGAAGACCAGATACGCCGCAGC
GCGAGCTCAGGCAAGAGATCATGGAACGGCTGTTCGACGAGCTGTGGGAG
CGGATCACTCCGGAGCTGACGCTTCTGCTGGCGTTACAGCAGCCTGCCGC
CGCAACAGCAACGCCCACCCGCCCGGGCAGCGGGGATATTGTTCGCGGAG
CGGGAGCAGGGCTACGGCACGAGCCGCGTTTGCGAGATCGCATGGAGGAG
GAATGAATGCGGGATTTCGAGCGGATCGCGGCGGAAAACACGCGCAGAGC
CTTGCTCGAGAACGACGCTCAGCTTTGCGAGCCGCCATCGATGCAACAAC
AGCAGGGAGACGAGGAGGAGGAGGAGGAGGAGAAGGAGGATGCTTGCAGC
GTCGATAGCGGCGGTGGAGGTTGTGGTAGACAAGAGGGCGAAGGGATGCG
GCGGCGGCGACGGTTGCGATTCGTCCCCGGCGATCCTTTTGCCAACGAGG
ACGCCGACGTCGACGCCTGGGCGAGGCACTTCACCTACCTCTCGGTGATT
CCTGGCGGCCGGGTTGGAGGAGGAGGTCCAGCAAGAGGGAAGAATGGCGA
TGGCATCAGCGGCAGCAGTCGCAACAACGGGAATGACAGCTTGCTGCCTG
GTACCAATCCCCCCCATGCTGCATCGGGTGAGATGGAAGTGGAGGCGGAG
GAGGCGGCGGAGGTTTTCGCAAGCCACGGCGTGTACGAGGAATACCTGGC
ATACGACCGTCGCCCTCCGGCCTTTGACGACGAAGACGAAGACGACGACG
ACAACGACGACGAAGACGACGACGAAGACGAATCTGACCAACGAGGAGGC
AGCGCCCTCGGCGGTGGCCACGGCATCTGCTTCGATTCCAACAGAAGTGT
CGAGGGTCGAGGAGGAACGGGGCCAGCAGGGTGGTTAGGGGGCTCTTCCC
TATGTGCTACTGCTGCCGACGCCACCGCCGCTCCTGCGGCTGCGGCTGCG
GCGGCTGCGGAGGCCGGTTTGACGAGCATCAAACCAGCGTCGGGTGCGTC
GGTGACAGGGGCCCCTCGGAAAGCGCGTGCGAGCAGAAGACCAGATACGC
CGCAGCGCGAGCTCAGGCAAGAGATCATGGAACGGCTGTTCGACGAGCTG
TGGGAGCGGATCACTCCGGAGCTGACGCTTCTGCTGGCGTTACAGCAGCC
TGCCGCCGCAACAGCAACGCCCACCCGCCCGGGCAGCGGGGATATTGTTC
GCGGAGCGGGAGCAGGGCTACGGCACGAGCCGCGTTTGCGAGATCGCATG
GAGGAGGAATGA
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