mRNA_P-fluviatile_contig12.1471.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1471.1 vs. uniprot
Match: D8LQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ14_ECTSI) HSP 1 Score: 491 bits (1264), Expect = 1.450e-166 Identity = 274/368 (74.46%), Postives = 312/368 (84.78%), Query Frame = 1
Query: 1 MGCPFAQLSPVLVLTFLVCCFQFGASFLSPKPILASLQRGRSLAGERKRVKETKGHKSGGAXXXXXXXXXXXXXXXXXRGG--APRMLGVSGVLAPPPLLHLEGGAEEDLGGEPLPWTESLSSGGPLFYADLLRCQASALQLGLGLDRSPVPRRMDTVCNPDKQSRVRNLVYTGERVRKVRMSYLDTPGMQVYSSVAYSAPGHDFPLLSLSAMAMGHVRVLALDLQPLFPGEEYAAKYAAANERLKAIRGRYPGMGEELRRDYYKGSPFFSDNMMYARWGAEEEASGFMENVVLPAFKECIETYVELVNSAPRPAHSPGSPAEKAVLERQAEFDRFHSEREQVRPVMTTNFGASFADTYISDFLFAYG 1098
MGCPFAQLSP+L+L+ LV FQFGASFLSPKP+LASLQRGRSLA V + ++ XXXXXXXXXXXXXXXXX PRMLGVS VLAPP L L+ ++E GEPL WTESL SGGPLF+ADLLR QAS L+ L L RSPVPR MDTVCNP+++SRVRNL+YTG+RVRKVRMSYLDTP MQVYS+VAYSAPGHDFPLL LSAMAMG VRVLALDLQPLFPGE+YAAKYA AN +LKAIR +YP +GEELR+DYYKGSPFFSD+MMYARWG +EEA GFM+ VV+PAF+EC++ YVE+VN AP AH+PGSP E+AVLERQAEFDRFH+EREQVRP++T+ FGASFADTY+SDFLFAYG
Sbjct: 1 MGCPFAQLSPLLLLSCLVLFFQFGASFLSPKPLLASLQRGRSLADASAGVGSSSRSRAXXXXXXXXXXXXXXXXXXXXXXXXXGPRMLGVSDVLAPPE-LQLQ--SDEGFEGEPLAWTESLGSGGPLFFADLLRTQASTLEFELALGRSPVPRCMDTVCNPERRSRVRNLIYTGDRVRKVRMSYLDTPDMQVYSTVAYSAPGHDFPLLGLSAMAMGSVRVLALDLQPLFPGEDYAAKYADANAKLKAIRNKYPQLGEELRKDYYKGSPFFSDSMMYARWGPKEEADGFMDKVVMPAFRECMQAYVEIVNQAP--AHAPGSPTEQAVLERQAEFDRFHAEREQVRPILTSKFGASFADTYVSDFLFAYG 363
BLAST of mRNA_P-fluviatile_contig12.1471.1 vs. uniprot
Match: A0A6H5K0Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q7_9PHAE) HSP 1 Score: 199 bits (505), Expect = 7.000e-56 Identity = 133/192 (69.27%), Postives = 151/192 (78.65%), Query Frame = 1
Query: 1 MGCPFAQLSPVLVLTFLVCCFQFGASFLSPKPILASLQRGRSLAGERKRVKETKGHKSGGAXXXXXXXXXXXXXXXXXRGG--APRMLGVSGVLAPPPLLHLEGGAEEDLGGEPLPWTESLSSGGPLFYADLLRCQASALQLGLGLDRSPVPRRMDTVCNPDKQSRVRNLVYTGERVRKVRMSYLDTPGMQV 570
MGCPFAQLSP+L+L+ LV FQFGASFLSPKP+LASLQRGRSL V + ++ XXXXXXXXXXXXXXXXX PRMLGVS VLAPP L L+ ++E GEPL WTESL SGGPLF+ADLLR QAS L++ L L RSPVPR MDTVCNP+++SRVRNL+YTG+RVRKVRMSYLDTP MQV
Sbjct: 1 MGCPFAQLSPLLLLSCLVLFFQFGASFLSPKPLLASLQRGRSLTDASAGVGSSSRSRAXXXXXXXXXXXXXXXXXXXXXXXXXGPRMLGVSDVLAPPE-LQLQ--SDEGFEGEPLAWTESLGSGGPLFFADLLRTQASTLEVELALGRSPVPRCMDTVCNPERRSRVRNLIYTGDRVRKVRMSYLDTPDMQV 189 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1471.1 >prot_P-fluviatile_contig12.1471.1 ID=prot_P-fluviatile_contig12.1471.1|Name=mRNA_P-fluviatile_contig12.1471.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=375bp MGCPFAQLSPVLVLTFLVCCFQFGASFLSPKPILASLQRGRSLAGERKRVback to top mRNA from alignment at P-fluviatile_contig12:2084717..2100748- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1471.1 ID=mRNA_P-fluviatile_contig12.1471.1|Name=mRNA_P-fluviatile_contig12.1471.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=16032bp|location=Sequence derived from alignment at P-fluviatile_contig12:2084717..2100748- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:2084717..2100748- >mRNA_P-fluviatile_contig12.1471.1 ID=mRNA_P-fluviatile_contig12.1471.1|Name=mRNA_P-fluviatile_contig12.1471.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2250bp|location=Sequence derived from alignment at P-fluviatile_contig12:2084717..2100748- (Porterinema fluviatile SAG_2381)back to top |