mRNA_P-fluviatile_contig12.1470.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1470.1
Unique NamemRNA_P-fluviatile_contig12.1470.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1470.1 vs. uniprot
Match: D8LQ12_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ12_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 4.420e-80
Identity = 247/415 (59.52%), Postives = 280/415 (67.47%), Query Frame = 3 
Query:  285 MSATLQQARERMISQQGLLGIDCEAELLKTTA---ISTELTGELTPSVS-CEGAAAEQEEKEEGLGDLARTLSALTRLSVESQLSLRRKL---------KQTSRSSRCLDTRTSSTLGVDSSNKESK-QEGVXXXXXXXXXXXXEACEDLASADSPIQVVLNKAVLESDVVGLCAALKSGASPNERDRNSHSSLHFAAAKGELGCLEELMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASTQPGDSNTFRRIAELLGPTALLARDELEQTPLHVASSCGNRAAVSVLLDLGADPDAKDRKGRVAGQSFLRQVTRRARADIRASLAAAVEVRLAAXXXXXXXXXTAAQGGESNEGAPRAMGVTRATSTASCESAEPVRKPSIMNLLQIGGWG 1487
            MS +L +AR+RMIS  G+L I+  A      A   I+TELTGE+TPS S CEG       +E+  G+L RTLSAL RLSVE Q +LRRKL                                +KE K ++G+                    ADSP +VVL KAV+ESD+    AAL+SGA PNERD   HSSLHFAAAK          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASTQ  + +TFR++AELLGP+ALLARDEL+QTPLHVA+SCGNR AVSVLL+L ADP+A DRKGRVAGQSFLRQVTRRARADIRASLAAAVE R+ A           A GG      P   G+ RATSTASCESAEPVRKPS+++LLQIGGWG
Sbjct:    1 MSVSLSEARQRMISGYGMLAIEDPAPAATKAAGEPIATELTGEITPSGSACEG-------EEDSEGELTRTLSALQRLSVEDQTTLRRKLGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSKEGKGEQGMAALG--------------VPADSPFRVVLQKAVVESDLDAARAALRSGADPNERDDLCHSSLHFAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASTQACEKDTFRQMAELLGPSALLARDELQQTPLHVAASCGNRGAVSVLLELNADPEATDRKGRVAGQSFLRQVTRRARADIRASLAAAVE-RIHAPPADAEDDDLDADGGGLP---PMPGGMKRATSTASCESAEPVRKPSMLSLLQIGGWG 390
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ12_ECTSI4.420e-8059.52Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ12... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2068383..2072283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.8
Seed ortholog evalue1.1e-69
Seed eggNOG ortholog2880.D8LQ12
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-15_001350.1
Exons3
Model size1547
Cds size1263
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1470.1prot_P-fluviatile_contig12.1470.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2068667..2072283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.6664023-UTR-P-fluviatile_contig12:2068382..20686661622815515.6664023-UTR-P-fluviatile_contig12:2068382..2068666Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2068383..2068666 +
1693562108.4986732-UTR-P-fluviatile_contig12:2068382..20686661693562108.4986732-UTR-P-fluviatile_contig12:2068382..2068666Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2068383..2068666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.6781492-CDS-P-fluviatile_contig12:2068666..20692871622815515.6781492-CDS-P-fluviatile_contig12:2068666..2069287Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2068667..2069287 +
1693562108.5108085-CDS-P-fluviatile_contig12:2068666..20692871693562108.5108085-CDS-P-fluviatile_contig12:2068666..2069287Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2068667..2069287 +
1622815515.6933482-CDS-P-fluviatile_contig12:2071228..20714351622815515.6933482-CDS-P-fluviatile_contig12:2071228..2071435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2071229..2071435 +
1693562108.520101-CDS-P-fluviatile_contig12:2071228..20714351693562108.520101-CDS-P-fluviatile_contig12:2071228..2071435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2071229..2071435 +
1622815515.7071464-CDS-P-fluviatile_contig12:2071848..20722831622815515.7071464-CDS-P-fluviatile_contig12:2071848..2072283Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2071849..2072283 +
1693562108.5292668-CDS-P-fluviatile_contig12:2071848..20722831693562108.5292668-CDS-P-fluviatile_contig12:2071848..2072283Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2071849..2072283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1470.1

>prot_P-fluviatile_contig12.1470.1 ID=prot_P-fluviatile_contig12.1470.1|Name=mRNA_P-fluviatile_contig12.1470.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=421bp
MSATLQQARERMISQQGLLGIDCEAELLKTTAISTELTGELTPSVSCEGA
AAEQEEKEEGLGDLARTLSALTRLSVESQLSLRRKLKQTSRSSRCLDTRT
SSTLGVDSSNKESKQEGVGAGGAGAGGGGGEACEDLASADSPIQVVLNKA
VLESDVVGLCAALKSGASPNERDRNSHSSLHFAAAKGELGCLEELMRSGA
RANVANNVGWSPLHYAVLGGHVSAVEALLKAGAYPCFRDNHLISPLHLAS
TQPGDSNTFRRIAELLGPTALLARDELEQTPLHVASSCGNRAAVSVLLDL
GADPDAKDRKGRVAGQSFLRQVTRRARADIRASLAAAVEVRLAAAAAAEA
AAMTAAQGGESNEGAPRAMGVTRATSTASCESAEPVRKPSIMNLLQIGGW
GGGGGDGGGGGGRTEARSGSP
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mRNA from alignment at P-fluviatile_contig12:2068383..2072283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1470.1 ID=mRNA_P-fluviatile_contig12.1470.1|Name=mRNA_P-fluviatile_contig12.1470.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3901bp|location=Sequence derived from alignment at P-fluviatile_contig12:2068383..2072283+ (Porterinema fluviatile SAG_2381)
AAAATCTGTAACGTTTGTCCGTTGGCAAGCTGCGCGCCCCCCTTCCGGCA
GTTGAGGTAAAAGCGCAGAGGAGACCACATACGTCGTTCCAGCGCTCGCT
GCGTAACCATCGTGCAACTGACTACTGAGACGTCGACTTCCGCAAATCGA
TTCGCTCTCTCACACTTCTTCCTCCCCACCAGTTTTGTTCCGCCAGCACA
CGCTCAGCGAGAGGGGGAGAGGAGGTGCAGGCTTGTTGTTCAAGGCCCGC
GCGCCTGATCCTGTCGATTCAAAATCGATCAAAGATGTCCGCCACCTTGC
AACAAGCGCGGGAGCGGATGATCAGCCAGCAGGGGCTGTTGGGGATCGAC
TGCGAAGCGGAGCTCCTTAAGACGACGGCAATCTCTACGGAGCTCACGGG
CGAGCTCACGCCCAGCGTATCGTGTGAGGGCGCGGCGGCGGAGCAGGAGG
AGAAGGAGGAGGGGCTGGGCGACCTTGCCCGGACCTTGAGTGCGCTCACC
CGGCTGAGCGTCGAGTCTCAGCTCTCGCTCCGGAGAAAACTTAAACAGAC
ATCACGGTCCTCGCGCTGCCTCGACACTAGAACCAGCAGCACTCTCGGTG
TCGACAGCAGCAACAAGGAGTCCAAGCAGGAGGGCGTTGGCGCGGGCGGC
GCGGGGGCGGGAGGAGGAGGAGGCGAGGCGTGCGAGGACTTGGCGTCGGC
AGACTCGCCGATCCAAGTGGTGCTGAACAAGGCAGTGCTGGAGTCCGACG
TGGTGGGGCTGTGCGCTGCGCTGAAGTCGGGCGCCTCGCCCAATGAGAGG
GACAGGAACAGCCACTCCTCCCTGCATTTCGCCGCCGCGAAGGGAGAACT
CGGCTGCCTGGAGGAGCTCATGCGTTCGGGTGCACGGGCAAACGTCGCCA
ATAACGTAAGTGCACACGAGTAATTCTTGCCCCTTCTTTTTTTTTTTAAT
CGCTTCCCACCCCTCTCCTTTTCCTCTTGCGCCGCGTGTGTGTGTGTGTG
TGTGTGTGTTTTATCCTGTGTGTTTGTTAGATGTTCATCGCTGGGCCAGC
GGTTGCCGAAAGGCAACCGCGCTTCGCTGTTGTTTTAGAGAGGGGAAGGC
AAAACTGTTGTGTACGAAGAGGGTGTATTTGTTTCACATATTTTCGTATG
TTGTTTCACTTGGATCCGATCCCTGATGAGCACTGACCCAAAAAAACGGT
TGTGTGGGTGGCGCTACGTCTCTCTGTTCTCGCCGCGTGCCATACACAGT
CGTCCTGACGCAGGACACCAGGTCCATACTTACGGTATGTTAGAGGTCGT
GCGCGACATTTTGAAATACTACTTCACACAGCGCGGCGGTATCGGCGCTC
TATATCCCGCTCGTGCAACTGCATTGACCTGTCTACTCTCTCATCGGTCG
ACTCTCTCCCGCGCCTCACGTAGCAACAAGGGCACTGCTGTAGCTTATTT
GTGGGCCCTTTGACCCTTTCGTCCCCCAACCAAAATTGAAAACGGTTTTC
TGTCGCCCTGTACAATTTTGGCTCCCTTCACATCTCCGATCCACGTCGAG
GGTTGTGTTTTGGACGGACTTGCTAGTCGGGGGAATGGTATGAGTGAGAC
CATTCCACACACAGCAACCAGTCCCTTCCGCCTCTCATCGTTTTTTGTTT
TTTTGCGACAGGCCGCACGTGTGCTGTGTGTGCATCCTTGTTTTTGAGAT
AGAGCGCGCCTCTCACCTCTGGCTGTTGTTCCCCCCGATTATTTGAGAAG
AATCTATGCGGCCCGCGTGCAAAAGCATAAAACGGAAAACACTCCCCTAG
AGTAAAAATATTCGTATGCATTGCATCCGCTTGCGACAGTTAAAGTAGCC
TGCAGCTTCCTGTTTGAGAACTTTCTCGTGTCCATGTTTCCGCACACGTC
AACGGATGTACTCGAAAGGGTATGAACGTTGTCCCCACATTCACAAAATG
GTTCCAGGCTGAATGTAAGGTTCCGAACACCTGCACATCGCAAGGGTAGA
CTCTAGCGGGGGTCGCTGGCACGGTTCCGAAAAGTGCCAACCCTACGTCC
CACACATTCCTCTTTTGGTCAGAATAAGGAGAAGTGAACAGGTGTCGGCA
ATACCCACTTGTTGGTTCTTTTTCCTATTATGAACATGTTGCGTAGAGCG
GCGTTGATGATTTTCCACATTTGCGCTGTTAGACGTGGTTTCCAAACGTG
CGCACCAAAACTTCCACGCACTTTTGTCACTGACATCCTTGATCAAATAT
TTCGACCTTGACACAGGCGTGTTGGTGAAGTCACGAAACGCCTCGGAACG
TTCGAGCAGAATCGGAACTCGACTCTCTCGGTTATTTTGATCTGCGTGCG
TGCTTGCTTGCCTGCGCGTGCATTTGTTTGCTGGACAGCTCCCGCCGTCG
TCCATGATTTCTTCCAAATGGCTTACATGTTTCGCATGTGCATGCATGTC
ACTGCCTTGGGTTGTTAGCATCAGGACTCTCTCGTTGTATGTAGAAAGCA
ACCTTGTGCACCCGCTGCGCTCTCCACGCAGCAGAAGACCGGGGCTCGAC
TAGGTGTCTGAAGCCGTAGTGGCTCTGGTCGCGACGACTGCTCTGGCGTG
GCGCTAGCATATTCTGTGCCTCCCTTTGCGAAGAACGCCATGGTTTTGCT
TCGCGAACGTTGCACACGCACTTCACGTGGCCAGCCCCCCTCAAGCCCGC
TCGGCCCCCTTGGATTATTTCTCTCCCTGCGTCCCCACTCCCAGCCCCCC
CGCGCTCCCGTGCTTGCACGTCAACTTATCGATGTCGTCGCGCGCGTTCT
TTTCTCTTCTTTCCTCCCTCTCTTCCCCTTTCTCCTTGTGTTCCAGGTGG
GGTGGAGCCCCCTGCACTATGCCGTCCTCGGGGGCCACGTCTCTGCAGTG
GAGGCTCTCCTCAAGGCCGGGGCGTACCCGTGCTTTCGCGACAACCACCT
CATCTCGCCGCTCCACCTGGCCTCCACCCAGCCCGGCGACTCCAACACCT
TTCGGCGAATCGCGGAGCTGTTGGGCCCCACGGCGCTGCTCGCCCGGGAT
GAGGTGAGCTTGGCCATGGTTGCCTTTTCCCGTGATGCCCGTGATGCTCG
CATCTGCACAGCCGTATCTTGGTTGATTCCTTGCTTTATGCGAGCAGGGT
ATTTTCCCCGTACCATCGCGTTTCCTTCGCCCCAGGGCTCCTTCCGTCGT
CATCGCTTCATGATGCGACGCGGCTTTCGCTTTGTGACTCGGTTGTCTTC
TTGGCTCGCCATGTGCGTTTCGTCTTTTTAGTTTTCTCCTCCCGGCTGTC
GCGCAGCACTTCTTTCGTTGTCCTTCGGCGTAACCGCCATGGAGAGACCA
CGGCTTTTTTTTATGAACGCGCGTAGGTAACCCTCATCCACTTCCTTCCC
TCCCCTGCCCCCGTCCGCCCACCCCTGTCATCAAACACGACAACATCTTG
TGCCGGGATTTACCAGCTGGAACAAACGCCCCTCCACGTCGCGTCTTCCT
GCGGGAACCGCGCGGCCGTGTCCGTCCTCCTGGACCTTGGAGCTGACCCG
GACGCCAAGGACCGCAAGGGCAGGGTCGCCGGGCAGTCCTTCCTCCGCCA
GGTGACAAGGCGCGCACGGGCCGACATCCGGGCGTCCCTAGCCGCCGCCG
TCGAGGTTCGCCTCGCAGCCGCAGCCGCAGCCGAGGCGGCGGCTATGACG
GCGGCCCAGGGCGGCGAGTCCAACGAAGGGGCTCCGCGGGCGATGGGAGT
GACGAGGGCCACCTCAACCGCGAGCTGCGAGTCCGCGGAGCCCGTCCGCA
AGCCGTCCATCATGAACCTGCTACAGATCGGTGGCTGGGGCGGCGGTgGG
GGGGACGGAGGCGGGGGTGGTGGGCGTACGGAGGCGAGGTCGGGTTCCCC
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2068383..2072283+

>mRNA_P-fluviatile_contig12.1470.1 ID=mRNA_P-fluviatile_contig12.1470.1|Name=mRNA_P-fluviatile_contig12.1470.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2526bp|location=Sequence derived from alignment at P-fluviatile_contig12:2068383..2072283+ (Porterinema fluviatile SAG_2381)
ATGTCCGCCACCTTGCAACAAGCGCGGGAGCGGATGATCAGCCAGCAGGG
GCTGTTGGGGATCGACTGCGAAGCGGAGCTCCTTAAGACGACGGCAATCT
CTACGGAGCTCACGGGCGAGCTCACGCCCAGCGTATCGTGTGAGGGCGCG
GCGGCGGAGCAGGAGGAGAAGGAGGAGGGGCTGGGCGACCTTGCCCGGAC
CTTGAGTGCGCTCACCCGGCTGAGCGTCGAGTCTCAGCTCTCGCTCCGGA
GAAAACTTAAACAGACATCACGGTCCTCGCGCTGCCTCGACACTAGAACC
AGCAGCACTCTCGGTGTCGACAGCAGCAACAAGGAGTCCAAGCAGGAGGG
CGTTGGCGCGGGCGGCGCGGGGGCGGGAGGAGGAGGAGGCGAGGCGTGCG
AGGACTTGGCGTCGGCAGACTCGCCGATCCAAGTGGTGCTGAACAAGGCA
GTGCTGGAGTCCGACGTGGTGGGGCTGTGCGCTGCGCTGAAGTCGGGCGC
CTCGCCCAATGAGAGGGACAGGAACAGCCACTCCTCCCTGCATTTCGCCG
CCGCGAAGGGAGAACTCGGCTGCCTGGAGGAGCTCATGCGTTCGGGTGCA
CGGGCAAACGTCGCCAATAACATGTCCGCCACCTTGCAACAAGCGCGGGA
GCGGATGATCAGCCAGCAGGGGCTGTTGGGGATCGACTGCGAAGCGGAGC
TCCTTAAGACGACGGCAATCTCTACGGAGCTCACGGGCGAGCTCACGCCC
AGCGTATCGTGTGAGGGCGCGGCGGCGGAGCAGGAGGAGAAGGAGGAGGG
GCTGGGCGACCTTGCCCGGACCTTGAGTGCGCTCACCCGGCTGAGCGTCG
AGTCTCAGCTCTCGCTCCGGAGAAAACTTAAACAGACATCACGGTCCTCG
CGCTGCCTCGACACTAGAACCAGCAGCACTCTCGGTGTCGACAGCAGCAA
CAAGGAGTCCAAGCAGGAGGGCGTTGGCGCGGGCGGCGCGGGGGCGGGAG
GAGGAGGAGGCGAGGCGTGCGAGGACTTGGCGTCGGCAGACTCGCCGATC
CAAGTGGTGCTGAACAAGGCAGTGCTGGAGTCCGACGTGGTGGGGCTGTG
CGCTGCGCTGAAGTCGGGCGCCTCGCCCAATGAGAGGGACAGGAACAGCC
ACTCCTCCCTGCATTTCGCCGCCGCGAAGGGAGAACTCGGCTGCCTGGAG
GAGCTCATGCGTTCGGGTGCACGGGCAAACGTCGCCAATAACGTGGGGTG
GAGCCCCCTGCACTATGCCGTCCTCGGGGGCCACGTCTCTGCAGTGGAGG
CTCTCCTCAAGGCCGGGGCGTACCCGTGCTTTCGCGACAACCACCTCATC
TCGCCGCTCCACCTGGCCTCCACCCAGCCCGGCGACTCCAACACCTTTCG
GCGAATCGCGGAGCTGTTGGGCCCCACGGCGCTGCTCGCCCGGGATGAGG
TGGGGTGGAGCCCCCTGCACTATGCCGTCCTCGGGGGCCACGTCTCTGCA
GTGGAGGCTCTCCTCAAGGCCGGGGCGTACCCGTGCTTTCGCGACAACCA
CCTCATCTCGCCGCTCCACCTGGCCTCCACCCAGCCCGGCGACTCCAACA
CCTTTCGGCGAATCGCGGAGCTGTTGGGCCCCACGGCGCTGCTCGCCCGG
GATGAGCTGGAACAAACGCCCCTCCACGTCGCGTCTTCCTGCGGGAACCG
CGCGGCCGTGTCCGTCCTCCTGGACCTTGGAGCTGACCCGGACGCCAAGG
ACCGCAAGGGCAGGGTCGCCGGGCAGTCCTTCCTCCGCCAGGTGACAAGG
CGCGCACGGGCCGACATCCGGGCGTCCCTAGCCGCCGCCGTCGAGGTTCG
CCTCGCAGCCGCAGCCGCAGCCGAGGCGGCGGCTATGACGGCGGCCCAGG
GCGGCGAGTCCAACGAAGGGGCTCCGCGGGCGATGGGAGTGACGAGGGCC
ACCTCAACCGCGAGCTGCGAGTCCGCGGAGCCCGTCCGCAAGCCGTCCAT
CATGAACCTGCTACAGATCGGTGGCTGGGGCGGCGGTgGGGGGGACGGAG
GCGGGGGTGGTGGGCGTACGGAGGCGAGGTCGGGTTCCCCGCTGGAACAA
ACGCCCCTCCACGTCGCGTCTTCCTGCGGGAACCGCGCGGCCGTGTCCGT
CCTCCTGGACCTTGGAGCTGACCCGGACGCCAAGGACCGCAAGGGCAGGG
TCGCCGGGCAGTCCTTCCTCCGCCAGGTGACAAGGCGCGCACGGGCCGAC
ATCCGGGCGTCCCTAGCCGCCGCCGTCGAGGTTCGCCTCGCAGCCGCAGC
CGCAGCCGAGGCGGCGGCTATGACGGCGGCCCAGGGCGGCGAGTCCAACG
AAGGGGCTCCGCGGGCGATGGGAGTGACGAGGGCCACCTCAACCGCGAGC
TGCGAGTCCGCGGAGCCCGTCCGCAAGCCGTCCATCATGAACCTGCTACA
GATCGGTGGCTGGGGCGGCGGTgGGGGGGACGGAGGCGGGGGTGGTGGGC
GTACGGAGGCGAGGTCGGGTTCCCCG
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