mRNA_P-fluviatile_contig12.1466.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1466.1
Unique NamemRNA_P-fluviatile_contig12.1466.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1466.1 vs. uniprot
Match: D8LQ09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ09_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.650e-18
Identity = 79/229 (34.50%), Postives = 102/229 (44.54%), Query Frame = 1 
Query:  379 MVRFKHRYLVATVSA-SPDKVTELNPKELLAIIKASVRAAGFSFAAAKSGGNDAPQLQSYARCWLVAPSGV*KCAACTGYRSSAIFWRESGITCL*TNITRLGNLQTR*TSAFWLPTSAFRSLSRPISATMALEAQVSHYKFGLSIAPRGFASYVPRESPIGWCAPLTLLNGTEDARISIKVEGVTGCYRTLKTVAMEAYARGYQRAGVDKKDVAALLQRQRQLLDVLQ 1062
            MVRFKHRYLVAT++A S +++ EL P E+LA+++ S+ A    F +    G+ +  LQ                      RS   F R SG+      + R G                                                     RES     A LTLL+GT+DAR+S+ V+ V GC RTLK  A+EAY RGY+RAG+     AALLQRQRQLLD  Q
Sbjct:    1 MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGS----GSTSQSLQ---------------------VRS---FDRTSGVC-----VIRAG-----------------------------------------------------RESHRMVRASLTLLSGTKDARLSVTVKAVAGCDRTLKAAAVEAYTRGYRRAGISDDAAAALLQRQRQLLDAWQ 143
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BLAST of mRNA_P-fluviatile_contig12.1466.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.150e-10
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 1 
Query: 2017 PTEVAAIGRF*VND*ADALCR*PWTAAIA---TWGQGEGRRVWMIIQASVALRSLLAG*GLNPEEYSPHSGRIGGATRLTAIGL 2259
            P  +  +G F V    + +C  P   A+A    +  G+  +VW   Q+S ALR L+AG GL PEEY+PHSGRIGGATRL A+GL
Sbjct:  240 PRGMVGVGGFEVL--LELMCCFPQLDAMAPITAYPSGQVWKVWTCAQSSSALRDLVAGQGLKPEEYAPHSGRIGGATRLGAMGL 321
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ09_ECTSI4.650e-1834.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KDR9_9PHAE3.150e-1047.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2014662..2018759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRibonuclease P/MRP protein subunit
Ec32 orthologEc-15_001380.1
Hectar predicted targeting categoryother localisation
Exons3
Model size2997
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1466.1prot_P-fluviatile_contig12.1466.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2015427..2016827 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.260755-UTR-P-fluviatile_contig12:2014661..20154261622815515.260755-UTR-P-fluviatile_contig12:2014661..2015426Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2014662..2015426 +
1693562107.9607732-UTR-P-fluviatile_contig12:2014661..20154261693562107.9607732-UTR-P-fluviatile_contig12:2014661..2015426Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2014662..2015426 +
1622815515.319559-UTR-P-fluviatile_contig12:2016827..20187591622815515.319559-UTR-P-fluviatile_contig12:2016827..2018759Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2016828..2018759 +
1693562108.013424-UTR-P-fluviatile_contig12:2016827..20187591693562108.013424-UTR-P-fluviatile_contig12:2016827..2018759Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2016828..2018759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.2791634-CDS-P-fluviatile_contig12:2015426..20154591622815515.2791634-CDS-P-fluviatile_contig12:2015426..2015459Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2015427..2015459 +
1693562107.9768178-CDS-P-fluviatile_contig12:2015426..20154591693562107.9768178-CDS-P-fluviatile_contig12:2015426..2015459Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2015427..2015459 +
1622815515.2933106-CDS-P-fluviatile_contig12:2016058..20161941622815515.2933106-CDS-P-fluviatile_contig12:2016058..2016194Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2016059..2016194 +
1693562107.9915478-CDS-P-fluviatile_contig12:2016058..20161941693562107.9915478-CDS-P-fluviatile_contig12:2016058..2016194Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2016059..2016194 +
1622815515.3072805-CDS-P-fluviatile_contig12:2016696..20168271622815515.3072805-CDS-P-fluviatile_contig12:2016696..2016827Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2016697..2016827 +
1693562108.0030565-CDS-P-fluviatile_contig12:2016696..20168271693562108.0030565-CDS-P-fluviatile_contig12:2016696..2016827Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2016697..2016827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1466.1

>prot_P-fluviatile_contig12.1466.1 ID=prot_P-fluviatile_contig12.1466.1|Name=mRNA_P-fluviatile_contig12.1466.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=100bp
MALEAQVSHYKFGLSIAPRGFASYVPRESPIGWCAPLTLLNGTEDARISI
KVEGVTGCYRTLKTVAMEAYARGYQRAGVDKKDVAALLQRQRQLLDVLQ*
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mRNA from alignment at P-fluviatile_contig12:2014662..2018759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1466.1 ID=mRNA_P-fluviatile_contig12.1466.1|Name=mRNA_P-fluviatile_contig12.1466.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4098bp|location=Sequence derived from alignment at P-fluviatile_contig12:2014662..2018759+ (Porterinema fluviatile SAG_2381)
GCCGCTTGCCCACAGCACACGCCCGCCCAGTCAGCCTCAGAAAGCCACGG
CCGTCTCCCGTCCTCACCCTCTCTCCCTCCTTATTCTACCCATCCCTCCA
CCTCTGCCGATTATTTTAACCGCATCTTCCGTCTACCACCTTGTAAGCGT
GTGTCAGGGGGCATCGAATGAGTGTAGAGAGATCAAGGCACAGGGGCGGG
GGCAGGGGCGAACGCACATCTCAGAGAGCGCGGAGAGGGAGGGAGACAGA
CAGACAGACGCACCGAGAGACCGAGGCTGAGAGATAGAGAAGGCTACACT
ACCAGATAAAGGACAATCTCCGGAAGACATTCACAATCTGCACGGCCCTC
CGACATCGGCAGAGAGAGTTGGGGTGTGATGGTGCGGTTCAAGCACCGGT
ACCTTGTGGCGACTGTGTCGGCGAGCCCGGACAAGGTGACCGAGTTGAAC
CCGAAGGAACTGCTGGCGATCATCAAGGCAAGCGTGCGAGCAGCCGGATT
TTCGTTTGCAGCTGCCAAAAGCGGTGGTAATGACGCGCCTCAGTTACAGT
CTTACGCGCGGTGCTGGCTTGTTGCGCCGTCTGGCGTTTGAAAATGTGCT
GCGTGCACAGGCTATCGCAGCAGTGCCATTTTTTGGAGGGAGAGCGGGAT
CACCTGCCTGTAAACCAACATAACCAGGCTCGGCAATCTTCAAACGCGTT
GAACCTCTGCTTTTTGGCTTCCCACCTCCGCTTTTAGGAGTCTATCGCGA
CCAATTTCGGCGACGATGGCGCTGGAAGCACAGGTCAGTCACTACAAGGT
GCGTGTTGCATGCCTGACAAAGGGGGCCTAGGTCACGGGGCATTTTCCTG
AAATGGAGGTCGCGTAATTACTTTCCAGCGCTTGTGGCGCGTGCAGCGCA
CGTGGGCTACAAGCGGCGAGCCCCGTTTATAGCGATCCCCAACTTGATGC
CTCTCACAGCGGACTTTTAGCATCTGTCGTTCAAAGGACGTAGGTCAAAT
ATTGATTTTTCGCCGTACCACGGGTACGTGCGTAGCGTGCAGGCGGTTGC
TACGGTTTACAAGAGCATTGGGCTAGCCGTGCTGCATTCTCTTGAACCGG
GCTTTCTCTTGAATCGCACTAGACAATGTACTGACTCAAAGGGTTCGTGA
CGAGCCGATTTGACTCTCTCAACTCGATACTTTCTCCTAAATATGGACTA
TTACTAGTAAATCAAGCCAAGTAGTGCCCCACCTGTTTTTTCCAATCGTT
TGGAGTCCCTCCGCCCCAAACGGAAGCATCCTTTCCTTCTGCTGACCAGC
ATGCGTTTCGCCCTTTGCTGCCCCATCCGCTGTCGCTGCCACGAGCGATC
AATCTCACAAGAACACGACTTCGCGTCTGAAATGCGTGTGCGCTCAGTTC
GGTCTTTCGATCGCGCCTCGAGGGTTTGCATCATACGTGCCGCGAGAGAG
TCCCATCGGATGGTGCGCGCCTCTCACCCTCCTCAACGGGACTGAAGACG
CGAGGATTTCGATTAAGGTTGAAGGCGTGACCGGTAAGTAAAAGAGGGAA
TGAAATAGATGGGGTGGAACGTGGTAGAAAGGGGGGGGGGAGGTCACGTG
ATGTTCGGGCGAGGCGGAACAACATTGGTTTGGCGGTTTGGCGCGATAAG
CATGAAATTGTAGCCTAGGTTTACCGAGTACTTACGGTTCGGCTGTGAGC
TGCCTAGTTTTCTAGTTGGCGTGTAGATTCCCGAAAACAATACTGTACGT
TTCAAATTTTGCAGATCTCGGTTTTTCTGATTTTGTGTTTGTTTCTCTAC
AGCCGCGGTAGGCTCCGTCGCACAGCAGTTCCCGGTCAAATTGTTCCCTT
AAAGAGCACGCATTTTGTTCCACACCAACACCCGCCCAAGGTTCTATCCG
GTGAAAGTCCTAATTGGACGGCGATTTTTCGATGCCGGGCACATGGATGA
TGTGCGTTTTCCCGCTGGGTCAATGGGCCGGGCATCAACAGCCCCCACCC
CGCCTTCTTTCCCTTCGCCTTCTCTGTTCCGACAGGGTGCTATCGGACCC
TGAAGACTGTAGCCATGGAGGCCTACGCTAGGGGCTACCAGCGAGCGGGC
GTGGACAAGAAGGATGTCGCGGCTTTGCTGCAGCGGCAGCGGCAGCTCCT
CGACGTGCTGCAGTAGGATGGCCGCGTCGTGCAAGCGCAAGGCGGTAGCA
GCCCCTCTTGAAGGGCTGGGGGGTAGAAAAATACGTGGCAATCTTTGCCC
CTGGACATGTGTTATTCGAGAAAGAGGGAACAAGGGGTGGAGGGACGTGC
CCCACACCTCGCAACCTTCGATTCTTGGCCCACTTCTGACGGGGGAGTAA
GAAAGAGGTTTTCGGCGGTTTTGTCCGGCGTCGGCGTCGACTCCTGGCCG
TGCGATGAGGGGAACTTTATGGCTCATGAGGCTCCAGCGGAGTCCGCTTT
TTTTTCCCCCTTACGGTAACCAATCTCAGTGCGGCCACACCGTTCCTCGC
CGTTTACTTCGGCTTTGACGCATTCGCTTCCCCCGTAGTGGGTCGTCCTC
GAGTAAGCACAGATGGCGATGGCCACACGAGAGCAGTGGCCATCGCCATC
TTGCACTGGATGGAGAGTATACTTCGTGGGTGAAGCAAGCGTGTCAGAGA
GAGAGAGAAAGGTTCCACAGAAAGCATCGGACCGCGAGAACTCATGAACT
CGCCGGCTTGACCAGGAAATGAGACTCCTCCACAAAAACACGTTCGGTAC
AACTACCGCGCCGCATGGGATATTTAGGGCTCAAGATGAGCCTCTCACAA
CCGTCCACTGTGTCCGAGGCACTGTGAGACGGCCGTGCCCGAGGTAGTAA
TCATGCAATATGTAGAAACGGCGATCGGAACACCGGCACTACCTCGCAGA
CACCTGCGGATTGGCAAAGCCGGAAAGGGGTACGTTGATACCAACGCGTT
GGCATTCACAGCAGGGTCCACACAAGGGTGCAAGGCTCGGGTCGAGCGAG
CTCCCGCAGTTCTTCGAAATCCGTCGACGTAGCTGGGATCGGGAACGTCG
TATCACGGTGAAATATGGTGGTAGGCTTGGCGAAGTGCAACTGGGGCTGA
GACAGATCTGGAAGTGTCCTACTGAAGTGGCAGCGATTGGAAGGTTCTAA
GTAAATGACTGAGCTGATGCTTTGTGCCGTTGACCTTGGACCGCAGCTAT
CGCGACATGGGGACAAGGGGAGGGGCGGAGAGTTTGGATGATTATCCAGG
CGTCTGTTGCCCTTCGTAGCCTGCTAGCAGGCTAAGGGCTTAACCCAGAA
GAGTACTCGCCGCATTCTGGCAGGATTGGAGGAGCGACGAGACTAACAGC
TATTGGGCTGATGGCGCCGACCTACAAGTGTGCGCCGACCTACAAGAGGG
CTTTCGGTTTTCCATCTCAGGCAAACCGCTTGATGGTCGCGCTTGATATT
GCTTTTTTTGCCACGGTAGCTGTTTGCACCATGAAAAGGGGCAGAGCTGA
CGGGAACGCTCGTGCAGAGTTTCGTTAGGGTACGAGAGAAAATGACCGGG
GCTGCGGAAATGCCGTCCGACGGGGATCTGGCGGCTTCGAGGTTGTGTGG
GAGGTGTAGGAATCGTTTGTGGGGATGACCCTGTAGCAACCCTTCAACCT
TATGCCTTCCTCCACTCCCTTGCTGAAGTTTCACGCGTCGAAATTGTCTT
AATTCTTTCATGCTTATGTTTTGGCGCCGTATAGAGGTCTCGAGACAGCA
CTTCAGCTGCTCTTGCTGCGTCTTTCAACTTTGACGGTAGGACGTTGGTC
CGAGCGGTCCTTCCTAAAAACAGGCATCGAAGCTGTGGCGCAGGATAGCG
ACTTTCGGCATGACGCAGGGGACGCCGTCGCGAAGAGAGGCGGTCCATGG
TTGGGGTTCCGTTTTTCCCGTCGGAACGGTCGCGATAGGGATGGGGGTGA
CGACTCTCGAGTACCCGAGAGTCTTTGAGTTTTTTATGATAAGCACCTTG
AAAGTGGCTGTCGCCGGAATGCTATGCTAAACTCACGATCGATGTTCCCG
CGCATACATTGATCTGAGAGGGGGACCCGACTTTCCGGTCAACGCCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2014662..2018759+

>mRNA_P-fluviatile_contig12.1466.1 ID=mRNA_P-fluviatile_contig12.1466.1|Name=mRNA_P-fluviatile_contig12.1466.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=600bp|location=Sequence derived from alignment at P-fluviatile_contig12:2014662..2018759+ (Porterinema fluviatile SAG_2381)
ATGGCGCTGGAAGCACAGGTCAGTCACTACAAGATGGCGCTGGAAGCACA
GGTCAGTCACTACAAGTTCGGTCTTTCGATCGCGCCTCGAGGGTTTGCAT
CATACGTGCCGCGAGAGAGTCCCATCGGATGGTGCGCGCCTCTCACCCTC
CTCAACGGGACTGAAGACGCGAGGATTTCGATTAAGGTTGAAGGCGTGAC
CGTTCGGTCTTTCGATCGCGCCTCGAGGGTTTGCATCATACGTGCCGCGA
GAGAGTCCCATCGGATGGTGCGCGCCTCTCACCCTCCTCAACGGGACTGA
AGACGCGAGGATTTCGATTAAGGTTGAAGGCGTGACCGGGTGCTATCGGA
CCCTGAAGACTGTAGCCATGGAGGCCTACGCTAGGGGCTACCAGCGAGCG
GGCGTGGACAAGAAGGATGTCGCGGCTTTGCTGCAGCGGCAGCGGCAGCT
CCTCGACGTGCTGCAGTAGGGTGCTATCGGACCCTGAAGACTGTAGCCAT
GGAGGCCTACGCTAGGGGCTACCAGCGAGCGGGCGTGGACAAGAAGGATG
TCGCGGCTTTGCTGCAGCGGCAGCGGCAGCTCCTCGACGTGCTGCAGTAG
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