mRNA_P-fluviatile_contig12.1463.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1463.1 vs. uniprot
Match: D8LQ04_ECTSI (USP7_ICP0_bdg domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ04_ECTSI) HSP 1 Score: 280 bits (715), Expect = 7.480e-76 Identity = 332/616 (53.90%), Postives = 374/616 (60.71%), Query Frame = 2
Query: 908 MAQRSTFVDPQGFMRISVKIIDMREAFFLVATDADLLRSVTGGGGGGDFADWNTCLPAKSFKDDQLLHVIQKVAELTGVNLVTCRPWLCTPRKSKEHTASPIRPAAALLPQHLQMNIWEALGDRPQYYIYLEEVDTLPDVWARRRNFPNLQLPVQEAAQLLLTGRAYAQLPHEVCLVFLKMDRRILAAYNKGRHGPALTAGAGVGGAAPEFVFIGKAMAHKTDRSCELVPIARSLAKLPGNLSLDLEVFEQIAPHEVRRFNSDTTVAQAKLYHGSVLLFRSAQPELAAQCPPGPVPHPPAEAQAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRGIGAAVADATTVIAGSPAHPAPSAAPLAPAFGGAXXXXXXGEY--------------RNNGSGRNRNHVAMAAGGAAPAA--PMMLSPEAQQRVTYLALCQVQENARQH------RQGTVTVGAAGPPISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSHGLTPSEQAQVAYAAQMAAHAAAVEHAQAKAVAMTAANQSYRTVSIMDALREVAP-RSTP 2686
MAQR+ F+DPQGF+RISVKIID+REA+F VATD DL RSVTG GGGGDFADW TCLPAKSFK DQLL+VIQKV+ELTGV LV+CRPWLC PRK++ P+RPAAALLPQHLQM+I E L A +++ P L + H P + +G+ PEFVF+GKAMAH+TDR CELVPIA SLA LP L+L EVFEQI P EVRRFN D TVA+A L HGS+LLFRSAQ E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A AT A PA P + + A XXXXXX + G + A+ A+P P+++ P AQ+R T LAL QVQEN RQH R + A SA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LTP++QA+VA A +MAAHAAAVEHAQ+KA Q+YRTVSIM+ALRE AP STP
Sbjct: 1 MAQRNIFIDPQGFVRISVKIIDVREAYFRVATDVDLARSVTGRGGGGDFADWRTCLPAKSFKHDQLLYVIQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHA----------------ATKQDQPPLSI-----------------------------------------HYPPVVSGSNE----PEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNL--EVFEQITPEEVRRFNGDKTVAEAGLSHGSILLFRSAQQEX----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAHATVTHAPKPAFPPARSGRIEDAVAAXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRVASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAEAVLTSAKEKLKKIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFLTPAQQAEVAAAXRMAAHAAAVEHAQSKA-------QAYRTVSIMEALREGAPPMSTP 518
BLAST of mRNA_P-fluviatile_contig12.1463.1 vs. uniprot
Match: D7FY72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY72_ECTSI) HSP 1 Score: 105 bits (263), Expect = 4.480e-19 Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 2
Query: 1265 ALGDRPQYYIYLEEVDTLPDVWARRRNFPNLQLPVQEAAQLLLTGRAYAQLPHEVCLVFLKMDRR 1459
ALGDRPQY+IYLEEVDTLPDVWARRR P +LP EA QLLL GRAYA LP EVCLVFLK+DRR
Sbjct: 779 ALGDRPQYHIYLEEVDTLPDVWARRRALPG-ELPAAEAGQLLLAGRAYANLPTEVCLVFLKIDRR 842
BLAST of mRNA_P-fluviatile_contig12.1463.1 vs. uniprot
Match: A0A6H5LAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN8_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.200e-15 Identity = 52/75 (69.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query: 1559 MAHKTDRSCELVPIARSLAKLPGNLSLDLEVFEQIAPHEVRRFNSDTTVAQAKLYHGSVLLFRSAQPELA-AQCP 1780
MAH+TDR CELVPIA SLA LP L L EVFEQI P EVRRF+ D TVA+A L HGSVLLFRSAQ E + CP
Sbjct: 1 MAHRTDRGCELVPIALSLAHLPEGLKL--EVFEQITPEEVRRFSGDKTVAEAGLSHGSVLLFRSAQQETTPSPCP 73 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1463.1 >prot_P-fluviatile_contig12.1463.1 ID=prot_P-fluviatile_contig12.1463.1|Name=mRNA_P-fluviatile_contig12.1463.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1026bp MHAWDAAYHQQVPPVTTQFLLHKFNAQSTDFGFTRAFEHEFIMAQRSTFVback to top mRNA from alignment at P-fluviatile_contig12:1980184..1995970+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1463.1 ID=mRNA_P-fluviatile_contig12.1463.1|Name=mRNA_P-fluviatile_contig12.1463.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=15787bp|location=Sequence derived from alignment at P-fluviatile_contig12:1980184..1995970+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:1980184..1995970+ >mRNA_P-fluviatile_contig12.1463.1 ID=mRNA_P-fluviatile_contig12.1463.1|Name=mRNA_P-fluviatile_contig12.1463.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=6156bp|location=Sequence derived from alignment at P-fluviatile_contig12:1980184..1995970+ (Porterinema fluviatile SAG_2381)back to top |