mRNA_P-fluviatile_contig12.1461.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1461.1
Unique NamemRNA_P-fluviatile_contig12.1461.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1461.1 vs. uniprot
Match: D8LQ02_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ02_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 6.930e-69
Identity = 144/261 (55.17%), Postives = 166/261 (63.60%), Query Frame = 2 
Query:   44 SSVLDAIRRRNTTQQRRVVEGKQGEVIDVPEGAGLLITGVSGCTVRSPGRSTSVTVERCNA-TKVHVGSVVASLELIHCTDVQVFVERCRTITVDVSKNVSLSCGRRPPSDGPREGSGEEEAEGGGIGREEEAKFHPRDAAEEASAIRLFTSSSEGVSINFEGCQVLTSSRPGDCSGT--------TAAVYHVPTDWRHEEGDGPRSVSRILVDRGSGDGGGGGEPRGKCKTLRCDQYGIPLEEVEAAKAGVPWTWERGMG 799
            SSVL  I  RN  Q+RRVVE K GE IDVPEG+GLL+TG SGCT+ +PGRS+SVTVERC+A T V+VGSVVASLE+IHCTDVQV V RCRTI              +PPS G                   E K  P +AA+EASAIRLFTS SEGV++ +EG  +L+   PG  +          TA  Y +P DWRHE GD PRSV+R+     SG  G G      CKTLRCDQYGIPLEEVEAA+AGV WTWE G G
Sbjct:    3 SSVLKTIAARNAAQRRRVVEKKHGETIDVPEGSGLLVTGCSGCTINAPGRSSSVTVERCDAGTTVNVGSVVASLEIIHCTDVQVSVARCRTIXXXXXXXXXXXXKCQPPS-GXXXXXXXXXXXXXXXXXXXEVKVQPSEAADEASAIRLFTSCSEGVTVRYEG--LLSKPPPGPVAAADPAVAADATAVTYRIPKDWRHENGDTPRSVTRV-----SG-AGSGXXXXACCKTLRCDQYGIPLEEVEAAEAGVAWTWEHGRG 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ02_ECTSI6.930e-6955.17C-CAP/cofactor C-like domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1970199..1973443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylate cyclase-associated CAP, C-terminal
Ec32 orthologEc-15_001460.1
Exons2
Model size2625
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1461.1prot_P-fluviatile_contig12.1461.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1970239..1971647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.7639368-UTR-P-fluviatile_contig12:1970198..19702381622815514.7639368-UTR-P-fluviatile_contig12:1970198..1970238Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1970199..1970238 +
1693562107.6689708-UTR-P-fluviatile_contig12:1970198..19702381693562107.6689708-UTR-P-fluviatile_contig12:1970198..1970238Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1970199..1970238 +
1622815514.8074443-UTR-P-fluviatile_contig12:1971647..19734431622815514.8074443-UTR-P-fluviatile_contig12:1971647..1973443Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1971648..1973443 +
1693562107.6982465-UTR-P-fluviatile_contig12:1971647..19734431693562107.6982465-UTR-P-fluviatile_contig12:1971647..1973443Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1971648..1973443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.7779436-CDS-P-fluviatile_contig12:1970238..19705011622815514.7779436-CDS-P-fluviatile_contig12:1970238..1970501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1970239..1970501 +
1693562107.678501-CDS-P-fluviatile_contig12:1970238..19705011693562107.678501-CDS-P-fluviatile_contig12:1970238..1970501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1970239..1970501 +
1622815514.7930675-CDS-P-fluviatile_contig12:1971121..19716471622815514.7930675-CDS-P-fluviatile_contig12:1971121..1971647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1971122..1971647 +
1693562107.6879244-CDS-P-fluviatile_contig12:1971121..19716471693562107.6879244-CDS-P-fluviatile_contig12:1971121..1971647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1971122..1971647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1461.1

>prot_P-fluviatile_contig12.1461.1 ID=prot_P-fluviatile_contig12.1461.1|Name=mRNA_P-fluviatile_contig12.1461.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=263bp
MSSVLDAIRRRNTTQQRRVVEGKQGEVIDVPEGAGLLITGVSGCTVRSPG
RSTSVTVERCNATKVHVGSVVASLELIHCTDVQVFVERCRTITVDVSKNV
SLSCGRRPPSDGPREGSGEEEAEGGGIGREEEAKFHPRDAAEEASAIRLF
TSSSEGVSINFEGCQVLTSSRPGDCSGTTAAVYHVPTDWRHEEGDGPRSV
SRILVDRGSGDGGGGGEPRGKCKTLRCDQYGIPLEEVEAAKAGVPWTWER
GMGAAAAAAAES*
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mRNA from alignment at P-fluviatile_contig12:1970199..1973443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1461.1 ID=mRNA_P-fluviatile_contig12.1461.1|Name=mRNA_P-fluviatile_contig12.1461.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3245bp|location=Sequence derived from alignment at P-fluviatile_contig12:1970199..1973443+ (Porterinema fluviatile SAG_2381)
GGGTCGTGTGTCTACCCACAGAAATGTGCAACACAAGAACATGTCATCTG
TGTTAGACGCGATACGCCGAAGGAACACCACCCAGCAGCGCCGAGTGGTG
GAGGGAAAGCAGGGGGAGGTGATCGACGTGCCCGAAGGGGCCGGCCTGCT
GATTACCGGCGTGTCCGGGTGTACCGTCCGCTCCCCGGGCAGGAGCACCA
GCGTCACCGTCGAGCGCTGCAACGCGACCAAGGTGCACGTCGGCAGCGTG
GTGGCCTCCCTCGAGCTCATTCACTGCACGGACGTTCAAGTTTTTGTCGA
AAGGTGAATGTGAGAAGCGAATAAGATCGAGGAGAGGGGTGTATTTGCGG
CCCCTCTCCAGACACCTATGTTGCGAAATGGTGGCGACAGCGGGCACTGT
TCGCAAAGCGGTCTCGAATGCTGCGTACATGCACGTGGCGTTTATACCTA
CCAGAAGAGGGAGAACATGTTTAATAGTCTGCACGTGTATGTTTCGATCC
AACATGCGCAAGGCGCTTGTCTTCGCCTGACCTTACAACCCTTCTGCAAA
CCGTTGGCGCAGTATCTCCGGCTTGTGGTCCAGTACACCTAGACCAGACT
ACACGGTTTATTTTTTTACCTGCCCCTCTGATGCCAACCCAAGGAGTTTC
GGCCAGTCACAATAACCGGGATCAGATATTGACCCAAGGGAAAACGGTGG
GCATGAGTCAATGTTTCCGATCTCGCCCCGCTCCTGTTCGCGCCTCGGCG
TTTGTCTAATTTCGCAGTACATCTGCTGCTGATATCTACAGCTTGGCCGC
TGATACTGCCGCCTTAACAAGGAAATGGTTGCTGCTCTTGCCTCTCCTCC
TCTCATTTCGTTGCATGCTGTTGATGTCTTTTGATTTCTGCCGCCACCAC
CGCCCCGTATTGACTCAAAAAAGGTGCCGAACAATCACCGTTGACGTATC
CAAGAACGTGAGCTTATCCTGCGGGCGCCGGCCTCCCTCCGACGGGCCAC
GAGAAGGATCGGGAGAAGAAGAAGCCGAAGGGGGAGGAATAGGAAGAGAA
GAAGAAGCGAAATTCCACCCGAGAGATGCGGCTGAAGAGGCCTCGGCGAT
CCGCCTCTTCACAAGCTCCAGCGAGGGCGTCTCCATAAATTTCGAAGGTT
GCCAGGTGCTGACATCGTCACGACCGGGAGACTGTAGCGGGACTACCGCC
GCCGTCTACCACGTCCCGACCGACTGGCGGCACGAAGAAGGGGATGGCCC
GCGCTCGGTGTCGAGGATACTCGTCGACCGCGGCAGCGGCGACGGCGGTG
GCGGCGGTGAGCCACGGGGAAAGTGCAAGACCCTTCGTTGCGACCAGTAC
GGGATACCCCTGGAGGAGGTGGAGGCGGCGAAGGCGGGGGTCCCGTGGAC
GTGGGAGCGCGGCATGGGAGCGGCGGCGGCGGCGGCAGCGGAAAGCTAGG
CAGCACCCGCACCAGTCGCTTCATTGAATGGCGAGCTTTGCGTGCGGATC
GGATCGAATCGCGCAGGGCCTGCCCGTCGGCGGGAACGCTGAAATGTGCG
GCTGCACAACAACGGCGGCAGAGATACCGATCTTAGCAAGATACTGCACT
CATCCCCGCCTCAGGAATACCGTGTTTTTTTATTTCGAGCGTCCTTAGAG
CGGAAGACTGTCCATGAGATTCGGTAGAAGAGGACTCATTACGACCTTCA
GAAAAAGACGCATCCTGACGTCCTTAACGCGGGGACGACTATACCGGGGA
TCTGCTCGGGTATTGCGCGCCCAACAATGCCTTGCCCTGGTGGCAGCCCG
GCAGCAAGCAACCCTGACCGTACCAAGGTCGGACTTCAGAAAGGGTCGTC
CCCATCACGAAGATGAGCCTCAATTTCACCGAGGGGTGGTTTCGGTAGCC
ATGTCTGGGAGCGGGGGGGCTTTGTCCAGAGCATCAGCAGACCAGAGCAA
CCGCTTTCTCTAGCGCAGTCTTGTTTGGTCTGGCGAGAGCCTTCTCCCGC
TGTCTGCGCCGCGAGGCCACCCAAACCTGTCGGTACATTGCGGCGTCTTG
CGGCATGGGGAGGTGGAGGAGGACGTGCGGAGGATCCCTCGCCGACGCAC
CCAGCAGCCGGTACCGGCAAACGGGGAGGTTTGTTTGCAGGGTGCCTCTG
ATGGCGACGCCGGCTTTCTTGTCCCCGGGGCGGTGATTTACGCGGTGGCG
GTCACAGAGGGAGTGGCATTCCGCTGGCGGCAACAGTAGAAGCGGCGGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGTAGCAGCAGCGGCGGCAGC
AGGGGCAACAGCAGTGGCAGCCACATCCACCGCGCCGGGTTCGGCAGCAC
GTGGTATTCCGTTGAATGATTTGACGCAAAGTTACTTAACGTGCAAAGTG
CGGCGTAGATGTATTGGCTTGAAGAGGTGGGGCGATGGGCTGGAAAGGGT
GATGCCCCCCCTCTCGATCTACTTTGTTCCGGAAACAATGTGCCGCTTGT
CTGGGTCAATGTGCATCGCATTGCAAATGCTTCGTGGGCGGTGGCGTACA
TAAATGTCTCTAAACTTCTTTGCATGTTGGACATTCCATCATCTTGTCGT
GTAATCACTCTCCCAAAGAATCAGATGGTTTACCGTGTTGGAGTACGTGC
TAGCACATTTGAAGGATACATAGTGAGCCCTCGCCCCAGCAGCGTCGCAC
CCGCGTAGTGGCGGGCAGGTGGTTGTAATTCAAAGTCATCGCACATTCCA
ATGTCGCTGGCGAGACGAAAAGTGATCGACAGGGAGGGGAGGGGGCGTGC
TGTGCGAAAGGAGGCCCCCGTATGTGTGCCTGCGTAATGTTTCCCGCTGA
GAGGTGATGTTCCCCTGGCGTGATTTTGCATGCAGTAAAGGAGTCTCTTG
TTCGGAAATTATCTGCCTCCTCGTGGGAGACAATCAGGTATGGTCTTAGA
CCCGGCAGCCGGTCGACTGCTCGAGGTGCGTGTGCGTGCGTGGTTAAAGT
GTGAGACGATTTCCGATCAACGGTTGAGTTTTCATCGTTCGTACTTTGAG
TGCAGTCGTGTCTCGTTTCCGCGATTCTTAGTGCGATGGATATTTACAAC
AGCTGTTCAGGGCATCGCCGCTTGAGCCGAAGTGTGGATTACTTAACCGG
GATGCAGTGGCGTCACGGGATTTTGGAGCGATAAAATTCAGGAATCGCCG
TAGGATATGAATCGCTTTACTGGGACCACGACTGAAGTCCATCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1970199..1973443+

>mRNA_P-fluviatile_contig12.1461.1 ID=mRNA_P-fluviatile_contig12.1461.1|Name=mRNA_P-fluviatile_contig12.1461.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1578bp|location=Sequence derived from alignment at P-fluviatile_contig12:1970199..1973443+ (Porterinema fluviatile SAG_2381)
ATGTCATCTGTGTTAGACGCGATACGCCGAAGGAACACCACCCAGCAGCG
CCGAGTGGTGGAGGGAAAGCAGGGGGAGGTGATCGACGTGCCCGAAGGGG
CCGGCCTGCTGATTACCGGCGTGTCCGGGTGTACCGTCCGCTCCCCGGGC
AGGAGCACCAGCGTCACCGTCGAGCGCTGCAACGCGACCAAGGTGCACGT
CGGCAGCGTGGTGGCCTCCCTCGAGCTCATTCACTGCACGGACGTTCAAG
TTTTTGTCGAAAGATGTCATCTGTGTTAGACGCGATACGCCGAAGGAACA
CCACCCAGCAGCGCCGAGTGGTGGAGGGAAAGCAGGGGGAGGTGATCGAC
GTGCCCGAAGGGGCCGGCCTGCTGATTACCGGCGTGTCCGGGTGTACCGT
CCGCTCCCCGGGCAGGAGCACCAGCGTCACCGTCGAGCGCTGCAACGCGA
CCAAGGTGCACGTCGGCAGCGTGGTGGCCTCCCTCGAGCTCATTCACTGC
ACGGACGTTCAAGTTTTTGTCGAAAGGTGCCGAACAATCACCGTTGACGT
ATCCAAGAACGTGAGCTTATCCTGCGGGCGCCGGCCTCCCTCCGACGGGC
CACGAGAAGGATCGGGAGAAGAAGAAGCCGAAGGGGGAGGAATAGGAAGA
GAAGAAGAAGCGAAATTCCACCCGAGAGATGCGGCTGAAGAGGCCTCGGC
GATCCGCCTCTTCACAAGCTCCAGCGAGGGCGTCTCCATAAATTTCGAAG
GTTGCCAGGTGCTGACATCGTCACGACCGGGAGACTGTAGCGGGACTACC
GCCGCCGTCTACCACGTCCCGACCGACTGGCGGCACGAAGAAGGGGATGG
CCCGCGCTCGGTGTCGAGGATACTCGTCGACCGCGGCAGCGGCGACGGCG
GTGGCGGCGGTGAGCCACGGGGAAAGTGCAAGACCCTTCGTTGCGACCAG
TACGGGATACCCCTGGAGGAGGTGGAGGCGGCGAAGGCGGGGGTCCCGTG
GACGTGGGAGCGCGGCATGGGAGCGGCGGCGGCGGCGGCAGCGGAAAGCT
AGGTGCCGAACAATCACCGTTGACGTATCCAAGAACGTGAGCTTATCCTG
CGGGCGCCGGCCTCCCTCCGACGGGCCACGAGAAGGATCGGGAGAAGAAG
AAGCCGAAGGGGGAGGAATAGGAAGAGAAGAAGAAGCGAAATTCCACCCG
AGAGATGCGGCTGAAGAGGCCTCGGCGATCCGCCTCTTCACAAGCTCCAG
CGAGGGCGTCTCCATAAATTTCGAAGGTTGCCAGGTGCTGACATCGTCAC
GACCGGGAGACTGTAGCGGGACTACCGCCGCCGTCTACCACGTCCCGACC
GACTGGCGGCACGAAGAAGGGGATGGCCCGCGCTCGGTGTCGAGGATACT
CGTCGACCGCGGCAGCGGCGACGGCGGTGGCGGCGGTGAGCCACGGGGAA
AGTGCAAGACCCTTCGTTGCGACCAGTACGGGATACCCCTGGAGGAGGTG
GAGGCGGCGAAGGCGGGGGTCCCGTGGACGTGGGAGCGCGGCATGGGAGC
GGCGGCGGCGGCGGCAGCGGAAAGCTAG
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