mRNA_P-fluviatile_contig12.1457.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1457.1
Unique NamemRNA_P-fluviatile_contig12.1457.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1935587..1936189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1457.1prot_P-fluviatile_contig12.1457.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1935608..1936189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.2867255-UTR-P-fluviatile_contig12:1935586..19356071622815486.2867255-UTR-P-fluviatile_contig12:1935586..1935607Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1935587..1935607 +
1693562043.4075105-UTR-P-fluviatile_contig12:1935586..19356071693562043.4075105-UTR-P-fluviatile_contig12:1935586..1935607Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1935587..1935607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.2990694-CDS-P-fluviatile_contig12:1935607..19357601622815486.2990694-CDS-P-fluviatile_contig12:1935607..1935760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1935608..1935760 +
1693562043.4146583-CDS-P-fluviatile_contig12:1935607..19357601693562043.4146583-CDS-P-fluviatile_contig12:1935607..1935760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1935608..1935760 +
1622815486.3124382-CDS-P-fluviatile_contig12:1936081..19361891622815486.3124382-CDS-P-fluviatile_contig12:1936081..1936189Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1936082..1936189 +
1693562043.4219687-CDS-P-fluviatile_contig12:1936081..19361891693562043.4219687-CDS-P-fluviatile_contig12:1936081..1936189Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1936082..1936189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1457.1

>prot_P-fluviatile_contig12.1457.1 ID=prot_P-fluviatile_contig12.1457.1|Name=mRNA_P-fluviatile_contig12.1457.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=87bp
MRRALHQKPSKPQVVSPAMFAKMPSAVVQHQGNSSMASGAGGDGGGGDRG
MAGSFVPLGNGTVPPLSSLRRGVDGGGNGDGDESDAG
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mRNA from alignment at P-fluviatile_contig12:1935587..1936189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1457.1 ID=mRNA_P-fluviatile_contig12.1457.1|Name=mRNA_P-fluviatile_contig12.1457.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=603bp|location=Sequence derived from alignment at P-fluviatile_contig12:1935587..1936189+ (Porterinema fluviatile SAG_2381)
GGCGGCAAGAGCGAGGCCTCGATGAGGAGGGCGCTGCATCAGAAGCCGTC
TAAACCCCAGGTCGTTTCCCCAGCTATGTTCGCGAAGATGCCCTCTGCCG
TAGTACAGCACCAAGGCAACTCCTCCATGGCTTCGGGTGCTGGCGGCGAC
GGCGGCGGCGGTGACCGTGGCATGGTGAGGCGGGAAAAATGGGCCATGTT
TTTTCGAGGAGGTTTCAAGCGGGAATCGGCATGAGACAGACTACGGGGCG
CCCCTCTTGTTTTGATACATCGTGCGCGATGTTATTTTTGGTCTTGTCAC
ACACGATGGCAGCTCTGTCCTGTGGCTACTGTAGCAGTTCGTGCTGATGG
TGCTGCCTTTGGGCCTGCTGCCCGGCCGCTGCTCGCTTGCCTATACTGCA
ATCACTGCCGCCACTGATGCTGCTGCTGCCGCCGCCGCTGCTAAAACTGA
CCGCTCTTGCCTTCGCTGCCTGTCTCTTCATCTGGTCGCCGCCAGGCTGG
TTCTTTCGTGCCCCTCGGCAATGGGACTGTCCCACCGCTCTCATCATTGA
GGAGGGGGGTTGACGGCGGTGGGAACGGGGACGGAGACGAGAGTGATGCC
GGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1935587..1936189+

>mRNA_P-fluviatile_contig12.1457.1 ID=mRNA_P-fluviatile_contig12.1457.1|Name=mRNA_P-fluviatile_contig12.1457.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=522bp|location=Sequence derived from alignment at P-fluviatile_contig12:1935587..1936189+ (Porterinema fluviatile SAG_2381)
ATGAGGAGGGCGCTGCATCAGAAGCCGTCTAAACCCCAGGTCGTTTCCCC
AGCTATGTTCGCGAAGATGCCCTCTGCCGTAGTACAGCACCAAGGCAACT
CCTCCATGGCTTCGGGTGCTGGCGGCGACGGCGGCGGCGGTGACCGTGGC
ATGATGAGGAGGGCGCTGCATCAGAAGCCGTCTAAACCCCAGGTCGTTTC
CCCAGCTATGTTCGCGAAGATGCCCTCTGCCGTAGTACAGCACCAAGGCA
ACTCCTCCATGGCTTCGGGTGCTGGCGGCGACGGCGGCGGCGGTGACCGT
GGCATGGCTGGTTCTTTCGTGCCCCTCGGCAATGGGACTGTCCCACCGCT
CTCATCATTGAGGAGGGGGGTTGACGGCGGTGGGAACGGGGACGGAGACG
AGAGTGATGCCGGGGCTGGTTCTTTCGTGCCCCTCGGCAATGGGACTGTC
CCACCGCTCTCATCATTGAGGAGGGGGGTTGACGGCGGTGGGAACGGGGA
CGGAGACGAGAGTGATGCCGGG
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