mRNA_P-fluviatile_contig12.1456.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 100 bits (248), Expect = 3.580e-21 Identity = 51/67 (76.12%), Postives = 54/67 (80.60%), Query Frame = 2
Query: 305 DGGGPPAQLRRSCDLCVRLKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTTRRTRAEASIA 505
DGG LR+SCDLCVRLKRAC+G SPC LC RR E CTRSVK+KSGPAKGTKYTTRR R EA IA
Sbjct: 28 DGGR--VLLRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRRVRMEAGIA 92
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 8.430e-21 Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 2
Query: 329 LRRSCDLCVRLKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTTRRTRAEASIA 505
LR+SCDLCVRLKRAC+G +PC+LC RR E CTRSVK+KSGPAKGTKYTTRR+R EA IA
Sbjct: 62 LRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIA 120
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 7.330e-18 Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 2
Query: 317 PPAQLRRSCDLCVRLKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTTRRTR 487
P +LR+SCD CVRLKRAC+G +PC+LC+RRH+ CTRS +KKSGPAKGTKY RR R
Sbjct: 6 PTVELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 62
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 9.990e-18 Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 2
Query: 317 PPAQLRRSCDLCVRLKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTTRRTR 487
P +LR+SCD CVRLKRAC+G +PC+LC+RRH+ CTRS +KKSGPAKGTKY RR R
Sbjct: 14 PTIELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 70
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: D8LKM5_ECTSI (Zinc finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 1.130e-13 Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 2
Query: 329 LRRSCDLCVRLKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTTRRTR 487
LR+SCD CVR+KR C+G +PC LC+RR++ C RS+KK+SGPAKGTKY R+ R
Sbjct: 23 LRKSCDYCVRMKRGCSGGTPCALCNRRNKNCIRSIKKRSGPAKGTKYCKRKPR 75
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: A0A835Z8Y1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y1_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.600e-12 Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 2
Query: 305 DGGGPPA-------QLRRSCDLCVRLKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTT 475
D GPPA QLRRSC+LCV+LKR C+G SPC LC R+ C R+ K+ SGPAKGT+Y T
Sbjct: 397 DARGPPAAAGAKVPQLRRSCNLCVQLKRKCSGDSPCTLCVRKGIECVRAFKRPSGPAKGTRYVT 460
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: A0A836CI83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI83_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.790e-9 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 2
Query: 314 GPPAQLRRSCDLCVRLKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTT 475
G QLRRSC+LCV LKR C+G PC LC+R+ + C R+ K+ SGP KG +Y +
Sbjct: 47 GRAPQLRRSCNLCVSLKRKCSGDQPCTLCARKGKECIRTFKRPSGPQKGMRYAS 100
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Match: A0A6H5JII0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII0_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 2.880e-7 Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 2
Query: 359 LKRACNGFSPCNLCSRRHEVCTRSVKKKSGPAKGTKYTTRR 481
+KRAC+G SPC LCSRR +VC R +++KSGPAKG KY RR
Sbjct: 1 MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRR 41 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1456.1 >prot_P-fluviatile_contig12.1456.1 ID=prot_P-fluviatile_contig12.1456.1|Name=mRNA_P-fluviatile_contig12.1456.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=137bp MSTNIHLPFGSMGASVLMEGSDSAAAAGAARDGVEAGQYPAVRVKVYEDGback to top mRNA from alignment at P-fluviatile_contig12:1930522..1935312+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1456.1 ID=mRNA_P-fluviatile_contig12.1456.1|Name=mRNA_P-fluviatile_contig12.1456.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4791bp|location=Sequence derived from alignment at P-fluviatile_contig12:1930522..1935312+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:1930522..1935312+ >mRNA_P-fluviatile_contig12.1456.1 ID=mRNA_P-fluviatile_contig12.1456.1|Name=mRNA_P-fluviatile_contig12.1456.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=822bp|location=Sequence derived from alignment at P-fluviatile_contig12:1930522..1935312+ (Porterinema fluviatile SAG_2381)back to top |