mRNA_P-fluviatile_contig12.1448.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1448.1
Unique NamemRNA_P-fluviatile_contig12.1448.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1825392..1826170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1448.1prot_P-fluviatile_contig12.1448.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1825418..1826170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.0978248-UTR-P-fluviatile_contig12:1825391..18254171622815486.0978248-UTR-P-fluviatile_contig12:1825391..1825417Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1825392..1825417 +
1693562043.3383493-UTR-P-fluviatile_contig12:1825391..18254171693562043.3383493-UTR-P-fluviatile_contig12:1825391..1825417Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1825392..1825417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.113765-CDS-P-fluviatile_contig12:1825417..18254731622815486.113765-CDS-P-fluviatile_contig12:1825417..1825473Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1825418..1825473 +
1693562043.3456392-CDS-P-fluviatile_contig12:1825417..18254731693562043.3456392-CDS-P-fluviatile_contig12:1825417..1825473Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1825418..1825473 +
1622815486.1275997-CDS-P-fluviatile_contig12:1825770..18261701622815486.1275997-CDS-P-fluviatile_contig12:1825770..1826170Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1825771..1826170 +
1693562043.3533847-CDS-P-fluviatile_contig12:1825770..18261701693562043.3533847-CDS-P-fluviatile_contig12:1825770..1826170Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1825771..1826170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1448.1

>prot_P-fluviatile_contig12.1448.1 ID=prot_P-fluviatile_contig12.1448.1|Name=mRNA_P-fluviatile_contig12.1448.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=152bp
MVTRVDGGFMMAELLGVRRYKFVIDRAKKLLERADLVSLRRAVDTDIYPP
ALTTTSTTAVTTINSNTTPAAYEEEAAAAGGSGGRLCPLFPEGQNYGAAG
HKNCGHGPIKDGWGRFAMSLPAKRTGSGKHGGSSLAENPRASGCKALITS
LR
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mRNA from alignment at P-fluviatile_contig12:1825392..1826170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1448.1 ID=mRNA_P-fluviatile_contig12.1448.1|Name=mRNA_P-fluviatile_contig12.1448.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=779bp|location=Sequence derived from alignment at P-fluviatile_contig12:1825392..1826170+ (Porterinema fluviatile SAG_2381)
AGTGGGACGTGCGGCATCGGGTGCTGATGGTCACGCGCGTCGATGGGGGA
TTCATGATGGCCGAGCTTTTGGGAGTTAGAAGGTGGTTTTTCGAGTTTAG
CCTAAAGGGCGTCGCACTCACGATCCGTGCAGCAATCTTAGATACTATCG
TCATGGCTACGCGGGCAGGCTAAACAGACGTTGATTTTAATGGGGCGTAT
TCAACGGGAATCCGAGACGAGCAGAACAATGTCTGTTATCGGCGGCGACA
ACTTTGTTTTGGGGTTTCTTTCAGGCTGCCAAGAGTTCCTTACGGTGCAA
CGATGAAAGGGGCCGCCACCCCACCGTAACGCGCCTCTTGCTCGCACGGT
CGCATTCCCGTTCATTCCACTCAATACAGGTACAAATTCGTTATCGACAG
AGCGAAGAAGCTGCTTGAACGCGCAGATTTGGTGTCGCTGCGCCGAGCCG
TAGACACAGATATCTACCCTCCGGCGCTGACAACGACTTCGACGACCGCA
GTCACGACCATCAACAGCAACACCACCCCCGCCGCCTACGAAGAAGAGGC
TGCCGCCGCGGGCGGTAGCGGCGGCAGGCTCTGCCCGTTGTTTCCCGAGG
GTCAAAACTACGGCGCCGCCGGGCACAAAAACTGTGGTCACGGCCCCATC
AAAGACGGCTGGGGCCGGTTTGCGATGTCACTGCCGGCAAAGAGGACAGG
TTCTGGCAAACACGGCGGTAGCTCGCTCGCGGAGAATCCTCGGGCGAGCG
GCTGCAAAGCGTTGATTACATCGCTACGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1825392..1826170+

>mRNA_P-fluviatile_contig12.1448.1 ID=mRNA_P-fluviatile_contig12.1448.1|Name=mRNA_P-fluviatile_contig12.1448.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=912bp|location=Sequence derived from alignment at P-fluviatile_contig12:1825392..1826170+ (Porterinema fluviatile SAG_2381)
ATGGTCACGCGCGTCGATGGGGGATTCATGATGGCCGAGCTTTTGGGAGT
TAGAAGATGGTCACGCGCGTCGATGGGGGATTCATGATGGCCGAGCTTTT
GGGAGTTAGAAGGTACAAATTCGTTATCGACAGAGCGAAGAAGCTGCTTG
AACGCGCAGATTTGGTGTCGCTGCGCCGAGCCGTAGACACAGATATCTAC
CCTCCGGCGCTGACAACGACTTCGACGACCGCAGTCACGACCATCAACAG
CAACACCACCCCCGCCGCCTACGAAGAAGAGGCTGCCGCCGCGGGCGGTA
GCGGCGGCAGGCTCTGCCCGTTGTTTCCCGAGGGTCAAAACTACGGCGCC
GCCGGGCACAAAAACTGTGGTCACGGCCCCATCAAAGACGGCTGGGGCCG
GTTTGCGATGTCACTGCCGGCAAAGAGGACAGGTTCTGGCAAACACGGCG
GTAGCTCGCTCGCGGAGAATCCTCGGGCGAGCGGCTGCAAAGCGTTGATT
ACATCGCTACGAGTACAAATTCGTTATCGACAGAGCGAAGAAGCTGCTTG
AACGCGCAGATTTGGTGTCGCTGCGCCGAGCCGTAGACACAGATATCTAC
CCTCCGGCGCTGACAACGACTTCGACGACCGCAGTCACGACCATCAACAG
CAACACCACCCCCGCCGCCTACGAAGAAGAGGCTGCCGCCGCGGGCGGTA
GCGGCGGCAGGCTCTGCCCGTTGTTTCCCGAGGGTCAAAACTACGGCGCC
GCCGGGCACAAAAACTGTGGTCACGGCCCCATCAAAGACGGCTGGGGCCG
GTTTGCGATGTCACTGCCGGCAAAGAGGACAGGTTCTGGCAAACACGGCG
GTAGCTCGCTCGCGGAGAATCCTCGGGCGAGCGGCTGCAAAGCGTTGATT
ACATCGCTACGA
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