mRNA_P-fluviatile_contig12.1437.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1437.1
Unique NamemRNA_P-fluviatile_contig12.1437.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 1.620e-146
Identity = 222/260 (85.38%), Postives = 242/260 (93.08%), Query Frame = 3 
Query:  135 MVYNPPVERGEDGQPIKDGDVVLDVPVNAMRRGAYVEQATRATGWAALYVVAWLLMRLSCYAGLPDDCELPEEPLEVLTILLVLLVFSLAQAWFCEITEERRFRDLSTKTYFPIFLVGAALALSGASRAESLRTSLQEERRDLTTFQITIFIILLIITVLVLLWHFAEAWKVLPGAHLISGLGMPRVEVREDLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIG 914
            MVYNPPVERGEDG+PIKDG V L  PVN MRRGAYVEQATRATGWA +Y++ WLLMRLSCYAGLP DC LP+EPLEVLT+LLVLLVFSLAQAWFCEI EERRFRDL++K YFP+ +VGAALALSG SRAESLR SLQEERRDLTTFQ+ IFIILLI+TV+VLL HFAEAWKVLPGAHLISG+G+PRVEVREDLLS+YVASR+ ILAYFILY+AFSVAR+DGWGYQLYLLAWVLSLFAQFK F+SVFWLAVTTGVFLQGIG
Sbjct:    1 MVYNPPVERGEDGEPIKDGGVALTHPVNPMRRGAYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIG 260
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: D7G1P1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P1_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 2.650e-59
Identity = 116/270 (42.96%), Postives = 162/270 (60.00%), Query Frame = 3 
Query:  135 MVYNPPVERGEDGQPIKDGDVVLDVPVNAMRRG-AYVEQATRATGWAALYVVAWLLMRLSCYAGLPDDCELPEEPLEVLTILLVLLVFSLAQAWFCEITEERRFRDLSTKTYFPIFLVGAALALSGASRAESLRTSLQEERRDLTTFQITIFIILLIITVLVLLWHFAEAWKVLPGAHLISGLGMPRVEVREDLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAYGISFLCD 941
            MV+NPPV +    Q   D +  + V V+  R G AY+EQA RA  W  L ++ WL  RL C+  LP  C+LP + LEVLT LL LLVF L QAWFCE+ EERRFR L+ + YF I ++   L +S     +  +     +  D     I + ++L+   ++++ +HFAEAW+ LPGA+ +SG     + + E+L  +Y  SR  I++Y +LY AF+    DG      LLAWVLSL AQFK   S+ WLA+ TGVF+QG G+Y + FLC+
Sbjct:    1 MVFNPPVLK----QDADDAEKPVKVTVSPARSGDAYIEQAKRAAAWIGLLLLCWLFQRLMCHFNLPPHCDLPSDALEVLTDLLALLVFGLTQAWFCEVLEERRFRHLTREAYFGIVIIVIGLIVSAIETTDWFQDMRFNDNSDWRDSHIVMAVVLITFVLVIVAYHFAEAWRTLPGAYYVSGNINLDIVIEENLHRIYNVSRGLIVSYALLYGAFAFEEGDGLKQHYVLLAWVLSLTAQFKSKPSIIWLALCTGVFIQGFGSYRLRFLCE 266
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.010e-48
Identity = 109/239 (45.61%), Postives = 149/239 (62.34%), Query Frame = 3 
Query:  231 GAYVEQATRATGWAALYVVAWLLMRLSCYAGLPDDCELPEEPLEVLTILLVLLVFSLAQAWFCEITEERRFRDLSTKTY-FPIFLVGAALALSGASRAESL-RTSLQEERRDL--TTFQITIFIILLIITVLVLLWHFAEAWKVLPGAHLISGLGMPRVEVREDLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAYGISFL 935
            G Y  Q  RA  WAALY +AW+L RL C+ GLPD C+L   PL+VLT L+VL  FSLAQA++CEI  + RF +L    + F + L+   + +S   R   L R     E +D   +  + TIF+  LI  VL++ WHFA AW  LPG  L+SG G+     +EDL  +Y +SR+ I+A+ IL+++F ++ +DG+ Y+  LLAW+LSL A F   VS  WL V TG+FLQGIGA  + FL
Sbjct:    2 GGYEGQNKRALIWAALYFLAWILQRLWCHLGLPDHCDLAMRPLDVLTDLVVLFTFSLAQAYWCEILLDDRFEELKKAPWIFGVILI-TPIIISALGRIGGLERWDKDNEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSG-GVKVEPPKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIGANRLRFL 238
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.040e-39
Identity = 92/239 (38.49%), Postives = 130/239 (54.39%), Query Frame = 3 
Query:  243 EQATRATGWAALYVVAWLLMRLSCYAGLPDDCELPEEPLEVLTILLVLLVFSLAQAWFCEITEERRFRDLSTKTYFPIFLVGAALALSGASRAESLRTSLQEERRDLTTFQITIFIILLIITVLVLLWHFAEAWKVLPGAHLISGLGMPRVEVRE--------DLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAYGISFL 935
            EQ  +A  W   Y+  + LM  SC  G+P++C    + ++VLT L  L VF+   A+ C I    R+  LS K YFP+ ++ + LA S     +     L +   DL+  +  + IILLI+  LV  +H+  AWK LPG  L  G GM   +V E        +    Y+AS   I+ Y +L+SAF+ +R D W Y   LLAW++SL A F  ++SV WL +TTGVFLQG+GAY    L
Sbjct:   42 EQGVKAASWVGFYIFLYALMAASCEVGVPENCTRATDAMDVLTELPFLFVFA---AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFE-GLHDPGGDLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWL--GWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 274
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 4.120e-35
Identity = 93/241 (38.59%), Postives = 132/241 (54.77%), Query Frame = 3 
Query:  243 EQATRATGWAALYVVAWLLMRLSCYAGLPDDCELPEEPLEVLTILLVLLVFSLAQA---WFCEITEERRFRDLSTKTYFPIFLVGAALALSGASRAESLRTSLQEERRDLTTFQITIFIILLIITV-LVLLWHFAEAWKVLPGAHLISGLGMPRVE-----VRE-DLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAYGISFL 935
            E+  +A  W + YV+ WLLM++SC    P +     +PL+VLT L  LL F+L QA   + C+  +  RF  LS + Y P+ +VG+ +  S  ++ +    +   E  D  T  + +   LL+I V L  ++HF  AW  LPGA +ISG G+   E     VR  +  + Y+A+ + + A+  L +AF   R D W Y   LLAWV+SL A F    SV WL VTTG FLQG+GAY   FL
Sbjct:    8 ERGAKAAVWFSFYVLCWLLMQVSCELEPPGNYRWACQPLDVLTELPFLLAFALGQATTAFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVDT--HEIEDGMTTAVNVVSTLLVIAVGLAFVYHFFVAWTTLPGAVMISG-GVSTPEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 7.070e-21
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = 3 
Query:  558 DLTTFQITIFIILLIITVLVLLWHFAEAWKVLPGAHLISGLGMPRVEVRE--------DLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAYGISFL 935
            +L+  +  + IILL++  LV  +H+  AWK LPG  L  G GM   +V E        +    Y+AS   I+ Y +L+SAF+ +R D W Y   LLAW++SL A F  ++SV WL +TTGVFLQG+GAY    L
Sbjct:   15 ELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWL--GWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 146
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: A0A7S3XT19_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT19_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 2.440e-16
Identity = 67/240 (27.92%), Postives = 111/240 (46.25%), Query Frame = 3 
Query:  228 RGAYVEQATRATGWAALYVVAWLLMRLSCYAGLPDDCELPEEPLEVLTILLVLLVFSLAQAWFCEITEERRFRDLST--KTYFPIFLVGAALALSGASRAESLRTSLQEERRDLTTFQITIFIILLIITVLV--LLWHFAEAWKVLPGAHLISGLGMPRVEVREDLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAYGISFL 935
            R  Y  + TR   W A+    W++ R++C  G P+DC     P   +  + +LL++   QAWF EI E RRF  + +  + YF + L G     S  S    +  S+       ++F ++  ++ +++       LW    A+ +L   H+ +           D   +YV  R+ +L +F++Y   +             LAW +SLFA F    S+  LAV+TGV +QG+GAY   F+
Sbjct:   41 RKFYKGEYTRMGVWLAVLTCLWIITRVTCACGAPNDCVSESSPSTTMNDIQILLLYGFTQAWFVEILERRRFWHVFSLQRWYFWVVLAGTPPVFSVISDLPVMEFSIS------SSFSLSGGMVAVLVAAGTGFSLWL---AFHILYAKHVYA----------MDNFLVYVLGRVGVLLFFLVYMMVAYNEXXXXXXXXXWLAWAVSLFASFNHPASLLLLAVSTGVMVQGLGAYHTDFV 261
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: A0A8J2SA83_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SA83_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.960e-7
Identity = 67/240 (27.92%), Postives = 102/240 (42.50%), Query Frame = 3 
Query:  252 TRATGWAALYVVAWLLMRLSCYAGLPDDCELP--EEPLEVLTILLVLLVFSLAQAWFCEITEERRFRDLSTKTYFPIFLVGAALA---LSGASRAESLRTSLQEERRDLTTFQITIFIILLIITVLVLLWHFAEAWKVLPGAHLISGLG-MPRVEVREDLLSMYVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAYGISFLCDPRVQ 953
            TR   W A+ ++ +   R    AGLP D   P       +L  + +L++ +   A F  +    R R L+  T    F V A++     S  S    L TSL     +   +      +   +   VLL  +   W     +   + LG MP           Y+A RLA++  +  Y       ND W    YL+AW+ +LF  F    SV  LA+TTG+F+QG+ AYG + + D R +
Sbjct:   62 TRLLAWIAMNLLVYAGQRAMVAAGLPSDGIDPTGRRATFILESVQMLILHACGTAIFAHVLAPER-RLLTRWTANAGFFVVASVTGCVFSLLSDLTPLETSLSSRGGEGAAY----IAVSCAVAFFVLLGLWFHVWYARRSS---TKLGVMP-----------YLAPRLAVVGAYAAYIIVLDVNNDAWELHHYLIAWIGTLFCAFDHPASVVCLAITTGIFVQGLAAYGPAEISDRRAE 282
[Close]
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Match: A0A7S2FSI0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSI0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.310e-7
Identity = 52/185 (28.11%), Postives = 90/185 (48.65%), Query Frame = 3 
Query:  411 WFCEITEERRFRDLSTKTYFPIFLVGAALALSGASRAESLRTSLQEERRDLTTFQITIFIILLIITVLVLLWHFAEAWKVLPGAHLISGLGMPRVEV--------REDLLSM-------YVASRLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAVTTGVFLQGIGAY 920
            WF ++T + RF  L  +  +  F++  A  +  +S + +   S  +   +LT  QI  ++ L  + VLV+LWH   A+  +   H+I     P   +        RE  +S        Y  +RL +  ++  Y    +  ++   +  + + WVLSLF  F+  +S+ +LA+T GVF+QGIGAY
Sbjct:    7 WFVDVTNDLRFSHLFNRKRWWFFVLYLASGVVWSSLSSTELASSVDADSELTGAQIAAYVGLGGVVVLVILWHLVYAY--VTALHMIDEDEHPDHAMMNVLDWAGREFHMSAHWQFWWAYAGARLGVCLFYSYYILLMLTESNFHMHHWW-VGWVLSLFGSFQHPISLAYLAITLGVFVQGIGAY 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LDF2_ECTSI1.620e-14685.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1P1_ECTSI2.650e-5942.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF3_ECTSI1.010e-4845.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JMR1_9PHAE2.040e-3938.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIF9_9PHAE4.120e-3538.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1N8_ECTSI7.070e-2142.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XT19_HETAK2.440e-1627.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SA83_9STRA3.960e-727.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FSI0_9STRA8.310e-728.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1642702..1650997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000840.1
Exons5
Model size3203
Cds size822
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.349886-UTR-P-fluviatile_contig12:1642701..16449481622815510.349886-UTR-P-fluviatile_contig12:1642701..1644948Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1642702..1644948 -
1693562087.9814749-UTR-P-fluviatile_contig12:1642701..16449481693562087.9814749-UTR-P-fluviatile_contig12:1642701..1644948Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1642702..1644948 -
1622815510.4228199-UTR-P-fluviatile_contig12:1650863..16509971622815510.4228199-UTR-P-fluviatile_contig12:1650863..1650997Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1650864..1650997 -
1693562088.0382621-UTR-P-fluviatile_contig12:1650863..16509971693562088.0382621-UTR-P-fluviatile_contig12:1650863..1650997Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1650864..1650997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.3620994-CDS-P-fluviatile_contig12:1644948..16449901622815510.3620994-CDS-P-fluviatile_contig12:1644948..1644990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1644949..1644990 -
1693562087.9906092-CDS-P-fluviatile_contig12:1644948..16449901693562087.9906092-CDS-P-fluviatile_contig12:1644948..1644990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1644949..1644990 -
1622815510.3753421-CDS-P-fluviatile_contig12:1646508..16467241622815510.3753421-CDS-P-fluviatile_contig12:1646508..1646724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1646509..1646724 -
1693562087.9999619-CDS-P-fluviatile_contig12:1646508..16467241693562087.9999619-CDS-P-fluviatile_contig12:1646508..1646724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1646509..1646724 -
1622815510.3859594-CDS-P-fluviatile_contig12:1647042..16472501622815510.3859594-CDS-P-fluviatile_contig12:1647042..1647250Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1647043..1647250 -
1693562088.009167-CDS-P-fluviatile_contig12:1647042..16472501693562088.009167-CDS-P-fluviatile_contig12:1647042..1647250Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1647043..1647250 -
1622815510.396727-CDS-P-fluviatile_contig12:1648984..16490671622815510.396727-CDS-P-fluviatile_contig12:1648984..1649067Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1648985..1649067 -
1693562088.0181289-CDS-P-fluviatile_contig12:1648984..16490671693562088.0181289-CDS-P-fluviatile_contig12:1648984..1649067Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1648985..1649067 -
1622815510.4093423-CDS-P-fluviatile_contig12:1650590..16508631622815510.4093423-CDS-P-fluviatile_contig12:1650590..1650863Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1650591..1650863 -
1693562088.0282223-CDS-P-fluviatile_contig12:1650590..16508631693562088.0282223-CDS-P-fluviatile_contig12:1650590..1650863Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1650591..1650863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1437.1prot_P-fluviatile_contig12.1437.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1644949..1650863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1437.1

>prot_P-fluviatile_contig12.1437.1 ID=prot_P-fluviatile_contig12.1437.1|Name=mRNA_P-fluviatile_contig12.1437.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=274bp
MVYNPPVERGEDGQPIKDGDVVLDVPVNAMRRGAYVEQATRATGWAALYV
VAWLLMRLSCYAGLPDDCELPEEPLEVLTILLVLLVFSLAQAWFCEITEE
RRFRDLSTKTYFPIFLVGAALALSGASRAESLRTSLQEERRDLTTFQITI
FIILLIITVLVLLWHFAEAWKVLPGAHLISGLGMPRVEVREDLLSMYVAS
RLAILAYFILYSAFSVARNDGWGYQLYLLAWVLSLFAQFKGFVSVFWLAV
TTGVFLQGIGAYGISFLCDPRVQ*
back to top

mRNA from alignment at P-fluviatile_contig12:1642702..1650997-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1437.1 ID=mRNA_P-fluviatile_contig12.1437.1|Name=mRNA_P-fluviatile_contig12.1437.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=8296bp|location=Sequence derived from alignment at P-fluviatile_contig12:1642702..1650997- (Porterinema fluviatile SAG_2381)
CTTACTGCTTCCTCCTCTCTCCCTCTCGCTGTCTCCCGTCCTCATTCATT
CTCTGCTGGTTGCGTGTACGCACACACGGTACGCGCTCGCACCCAACAAA
AGTTTAAAGTCGGTCTGGAACAAGAGCAGCAGCCATGGTGTACAACCCGC
CGGTAGAGCGCGGCGAGGATGGCCAGCCCATCAAGGACGGGGACGTGGTG
CTCGACGTGCCCGTCAACGCGATGCGGCGCGGGGCCTACGTGGAGCAGGC
CACGCGGGCGACAGGCTGGGCCGCATTGTACGTCGTGGCCTGGCTGCTGA
TGAGACTCTCGTGCTACGCCGGCCTCCCCGACGACTGCGAGCTGCCCGAG
GAGCCACTTGAAGTGCTCACGATCCTGCTTGTCTTGCTGGTCTTCTCCCT
GGCGCAGGTGTGTATGTGTGTGTGCGTGCGTGCGTGTGAATTTGGCTGCG
TGTGTTGCTTCAGGAGGTTGCGTTGTGCACCGAATGCAGGAGCGAGATCC
CATCCTGTGTTCCTGGATTATCACGGGTCGCACGTATTGAGTAAGGCAGG
TGCGCGGAGAGACATCTGCGGACAGAGACCTTCTATCGCTCGATGCCTCC
TTCACGAACACCCCCCCCTCTATCCGTCGGTGTCCAAGAGATAGGAAGAT
CGATCCGGAGAGGCGGATTGCCTCGCTCTCTCTCTCAGCTCCTCTGCTGG
CGCGGAGATAAACCAGCAGACAGATAGCTGTATCGCTCGATGCCTACTTC
ATTCACACACCCCCCCTCTCTCCATCGATGCCCAAGGCCAGGGATCATCG
ATGTGGAGAAGCAGCGTCTCCTCCTCTCTCTGATCTGGTGTGGGTATTAG
CAATCGGTTGCTCAACTCAAACACACGCGCACCAAACGTACAACGGGACG
AAAGAGAATTTTGTCAAATATCACGCACGCTGTCTTTACCATCCACACTT
CGTCCATGTTGTTATTGCCCTCTCCAGTGTCCCGGGAAACCGGACGCCGC
GGTGCCTCTTACGTGCACGTTTCTTGAGCTGCTGTGCATGCACTTAGGTG
GCCGCCAGACGTTGCGATCCCCCTCGTCGTTGTTGTGTCCGGTGCGGTCG
CAGCGAGCGTTATTGTGTGTTTCAAGCCTGAGAGAACGCAGCGCGACAAT
GTGCTCCCTTTACTATGTGTTATATGTGTTATCACAGGAGGGTTTTTCGA
AGAGTTCGGTGGACCTCGACTGCAGCCCTGACGCGGTAGTACTACTGTAG
AGAGAGCACGACCGCGCTCAACAACCTCTTCCATTATTTGCATCCAGAAT
GTGCAAGGGGCACGCGATCGTGGTTTATCTTCGCGTTGAGCCGGGCGCGC
AACGCCCACATACATCACAGGAGGGGAGGTGGCATGCTCAAAACCACCGC
CGCGTCCTCTATAGTGTTCCGTGCGTGTCTTGATTCCGTTTCTTAAAATT
ATGCGAGTGTTGCCCGGCATGTTGGGAATGTCACGTGGTGCCGGGTACTT
GTAAACCCAGACGCAATACTCGGATTGGAGGGTTGGGATATATATCTCAC
TAAACCTGCCCTTCTTTTTTTGCAGAGAAGTTGCTAGAAAAAAAAGGAAG
CGGATTTCCCCCCCAAAAACATCACAACGAGTACCGGCATGTGTCCCATG
AGCCCGTTGCCTGTCTCCCCTGATATTGTTCAACCGTCCGGTGAGAGGGG
CACTCATCCACGGATGAAAGAGCTAAGTCACGCCCCATTCACCCATAGTA
TTATGTCCTTCCTTCCTCAACCTTATCCATTACTAAGTATTTATTTATTT
CGATGCATAAAACCAGACTTGTTGCAAGTTTGAAGTAATCCCTCAGTTCA
AATTTCCCTGAGCCCCGTCATCTTCCCCCTCTCCTTGACGCGTTTGCGAT
GCTTGTTTCATGTCCGGTTCGCCTTCAAAGGCATGGTTTTGCGAGATCAC
GGAGGAGAGAAGATTCCGTGACCTATCCACCAAGACTTACTTCCCCATCT
TCCTGGTCGGAGCGTGAGTCGAAAATTGGACGTTTCGTCGCCGCCGAGTA
TTCTCTAGCCGCATGAAGGTGGTAGCGAAACGGAATCGATGCCTGCGGTG
TATGCTTCCCGAGAGTGCGAGGATGTGCGTGCCGCGTGGGGTCTCCGTTG
TCGTATTCTCTCGATTCCAAAGACATCCCCTGCTCGATACCGCAGGTAAT
CCCTGGATGATAATCTAATCGTCCATGCCTCCGATGATACTGGTTTCCAT
CCTGCGCTGTGCTGCGTCAAGACACGCTCGGGTCTTCGGCATACAGAGTA
GAGGCTGCTATATATTTCGAGGGTCCAGCGAGCCACAAAAATTCTTTCGC
GTCCGGCTTCCTCGTTCATCGGACGGAGATAAGATACTTGACCCTTACGC
GTGGCAAGCGATTCTGATTTTCTTTCTGATTTTCTTTCTTACTCTGCTAG
TTCCACTAGACTCTACGCCCCTACCCGCAGGCACGGAAAATATCAACTCG
CAATTCCGAAAACAGAAGATGTGGGGATATTTATATCCATGCCTTTTCTT
GAATTTTTAGCAGCAGAAAATGGTACGCGACGGGGCCCGAAAGGTTTAAA
GAACAGTAATTGATTCCAACCCACTTCTAATGGTGCCATGCGGGGGCCCG
GTATAGTGCGGCTATGGGACAAGTGAATTTCCCCGCACTATGGCAGCAAT
CGCACTTTTCAGAAGGGGCACTTCAAAGTATTAAAAAGAAAATGTAGTGC
CTGCGGCGACTTCAGTTTTAGATCGAAACACCCACGTGCGGCGCGGATTG
GAGCGCATCGCAGACAAAAGCGGGAAGACCCGCGGGCGTCCTTCCTGTGC
GTTATCATACCTTGGTTCCGAGGTACGTGACAGGTATCGCCCGTAACCGT
TTTTGCAGGTTTTCTTCCCTCTTTCTATCCTGCTTTCTCAACATGTGGTG
GTCCCGTAGATTTCGAAAATGATACTTGGAAAGTTTTCGGCCATGGTGCA
GGAAAATTACCGCGGCACAATTACGGAGGACAGCCCGTTGCGTTGTGCAG
GCTTCCTGAGCGCAGTCAAAGTCCAGGGCGCACCGCTTAAGCTTCCGATT
ATCACCAGGATGGTCTCTCACATGCAGCTAGCTTGTCCTATCCTCATCGC
CAGGATTTTGGTGATCGCGGGGGCGGACGGACACTCCGTAGGTACGGGCT
GACAAACGCTACACTTGACTACTAGCGGGTCCGTCCGTACACACCCATGG
CCACCGCTTATCAGCTACTATTCCTTTCCTCCTGCTCTCCATCCTTATCC
TTCCTCCTCATTTTCAAAATTCCTTCCTTTCCTTCCGTCCCTCCACCGTC
GAGGCTTCGCCGAGTCCGTCCCGCCTCTTGCAGCCCGCTCGTGCTATCGG
CCGCCTTGATTTTCGGTTCCCGGAGATACTTTCTTGCAGCCAATGCTGCA
TATTTCGGCAAATCAAATCATTCGTCGGCACTAAACTGTTGCATTTTTCG
TTTTTGTTTTGTTTTCTGTGCAAACTTCTGCCCCGCCGAAAGGCTGCCCG
GTGAACAGCACACAAGCAGTTTTATCTTGTTGGCCTTCGCGGGCGGATTC
CTTTTTAACATTAATCGTCGACGTGTCCCCCCCCTGTCCTTTCCTTTTTC
TTTTCTTTTTCTTTTTACCTTTGGTTTACCCCCCCCCTATCCTTTACTAA
TTAATTTTGTTTTGTTTTTTCATCTTTTGGGCGCACTCTCTCCGCAGCGC
TCTGGCCCTGTCAGGCGCCTCGCGCGCCGAATCCCTCCGCACCTCCCTCC
AGGAGGAGAGGCGAGACCTGACCACCTTCCAAATAACGATCTTCATCATC
CTGCTCATCATCACCGTGCTCGTGCTGCTGTGGCACTTCGCGGAGGCGTG
GAAGGTTTTGCCGGGGGCGCATCTCATCTCCGGGCTCGGGATGCCCCGCG
TCGAGGTGCGTGTGCTACTGCTGCCCCCCCCGCCCCCGCACTAACCCACT
TGATAGCTCCCCTCTTTTTCGTCGCATGTTTAGGCTGACGCCTCCGGGCC
GGTGCTTTGGATCCACTTCTTGGCCTCGCCCCGCTCGAGCCCCGGCCCAG
GCTCCCCCGAACGTCTTCCACATGTATCAATGATCCCTTATCCCTCCGCC
CCTCTCCAATCCGCGTTTTCCTCATAGGTTGCCCGCGAAACTGGTGTCGA
TCCACGTGGCCTGTTGGCTCACGATCCCCCCCCCCCACACTTCCTACCCA
CCCACACATTATCGCACGGGCAGGTGCGCGAGGACCTACTGTCGATGTAC
GTGGCCTCTCGGCTGGCTATCCTGGCGTACTTCATCCTGTACTCAGCCTT
CTCCGTGGCGAGGAACGATGGCTGGGGCTACCAGTTGTACCTCCTGGCGT
GGGTCCTCTCGCTCTTCGCGCAGTTCAAGGGGTTCGTCAGCGTGTTCTGG
CTCGCCGTCACCACGGGCGTGTTCCTTCAAGGCATCGGGGTGAGTTTGAT
TGAAGGCCGCTGCGGTCGGCGGGAGGGGCAGCAGGCGTCAGGTCCAATCG
AGTCGAGTCAAGCGCAGACCAAATGCTTTGATTTTATCCCTTCACAGTTC
GGATGGGAACTCTGTATTGCTTTTGTCACTATGTTTCGACTGCACGTTGG
ATCGGAGTGGGTTTTTCAACGGAGTCAAGTCGAGCCGAACCAACCCATCG
CTTCGATTCAAGCTCACCCTCCAGTTCGAATGGGCAAACCCACTTGAAAT
CCACTCGCTTTGATGTAAGCCAACTCCTTCCCATCGTATCTTTCGTTGTC
ACTGTTGTCAACCATGGATGGAAGCGGGGTGACTTTCATTCAGTCGAGCC
TGGCCGGTAGGAGTCGAGTCTGGTCGAGTGCTTCAGAGTACTCTTACACC
CACTTGTTGGATAAGATCAACCTATCGAGCATGGAGAAAACGAGATGAAC
GGACGTTTTGCAACCGTGGGATCCGGATGGTCTAGTCAGCAGAAGACTAG
TCAAGTTGAGTCGGGGCGAGGTCAACCCACTTTCTCTCCTCCGGTCAATC
AAGTCAATCAACGAGCGAGAGGCCGAGGTTTTCGTCTTTTTCTTGGTGTT
TTCGCTCGTTTGGACGTTTTGTAACGGTCGCTCGTTCGAACGTTTTGTAA
CGGTGGGATCGACTTGAGTGTACGAATCGAGGCAAGGCTTTGCGAGGCGA
GTGCTACCCAGAAACTCTCACCCGCGTCTTTGATGAGATCAATCGATCTG
AAGCTGTTACCAAAAAACTAATACCACTTTTGCTTTGCCATTGTCAGCCA
GCCTGGACAGGTGGGTGAAACTTCTTGTGATCTGTATCTCCGCGCACACG
GGGGGGGTCACGCGCGCTGGGAGATGTGTTCATTCGCGTATACTTTTGTC
TAAAGTTGCTGATTGGAAAGACTTCTCGACAATATTCCGGGAATGTTCCG
AGCATTTCCCGACGATGGCGGCGTTGCGTGAACGACCTGCACAATATTAT
CGGCGTTTCCTGAAATGCGTTGTCGTGCATATGAGCCCCTTTTTTTGTGA
AGCGACGCGACTTAACTTGAAACAGGCTTCTGGGACAGACGGACGGCGGG
GGGAATGAGTGATCCCGTCCCGCCTGAGTTTTCAGTGGTGCCACGATCTT
CGCCCCCCTCCTGTGCATGTTTGCCAGCATCCGTTCTTCGTTGCCTATTC
CGGTGGTCTTTCACCTGAGCATGCTTGTGTGCCGCTCGTTCTGGTTCTCG
TATCCGTGAAGTTTCTTATCTTGCCCAAAACGCAAGATGATTATGAAAAC
GAAGGCCTGAAAAACAAAAGGATTTGTCAATGATGCTAGTTTGCCCTGCA
GAGCTTGTATTTCGTATTTCACAAACACGGGTTGATTTACGGACTGAGCA
CCGCTCCCCGTCTTGATGAAAGGCGCCCCCATCGCTCGACTTACCCCGAC
AGTCCTTCGCTTTTCCCGTCACTGGCGATGACGGCATGCCGTGTCCGATC
TGTGCAGGCATATGGGATAAGCTTCCTGTGCGATCCCCGAGTGCAATGAT
CCACCGCCGACATTGAAGATGGTGATTCGCCGCCGTCATGGGAGATAGCG
ATGCACCGCCGTCTCACCGCAACATCATTGTGGTCCACCTTCGTTTGACT
TCATGATCTACAAATCTGGATGAGGATCTACATATCTGCATCATCAGCGT
CGTTGCTAGGCTAGGAAGGGTGCCAGCGAGCCATCCCCAATAAGGGAGGA
AAGTAAGGTTGGGAATTGTTCGCGGAGTGTTAGCACTCGGGCGTAATTGT
GGGTCTGTCCCGGATCGCAAAGCTGCGGCGTTTTGTTGCGGTTGTAGCGA
CTTTTTGTGTCCGGCTTGTGTCGCAATCTTTACGTTGCCGGCCGACCTTC
GTCGCGGGCTGAACTTGTTGTTACGTGATTCTGTGGCGAATTTGTTGTCG
CCGGCTGGCTTTGTCGCAAGCAGCGAGAACTCCAGCCCCGGGTATGTGGA
CTTGAGCTGGCGTCCGGCGCGGATTCTGCTTGCCCAGTTCAGGCCTTGTG
CATGGACTCTCTCGCTCTCGCTCTCGCTCTCTCTCCCTCACTCTCTGTCA
TGCGCTACGGGTGGTTTTCCCTCGCTTTCACGTGGTAGCAGGAGGAGCGT
GTGCTTGTATTGTGGTGTCTTCTTCTCTCTTTCGCTCGCGGCCCAGTGTT
GTTTCCCCGCGGTTCGGTTATCAGCCACAATAAGCTTATCCTTCCGCGGC
TCGATGGTCACGCACGATGCCGGAGCCACCTCTCGGCACGAATTATGGTT
TCCCGTTACAGGCCTTGTGCTTGGACTCTCTCTCCCGCTCTCGCTCTCGC
TTTCTCCATCGTGTGCTAGGAATCTCGTGCTGAGAGAACTTTGGCTCTCG
CCCATGTGCCCTAGAGTATTGTGGTGCTAGGAGTCTTGTTTTTTCCCGTT
CCTCGTCGTGTGTTACCTCATGGAGGTTCGGTAATCAGGTAGAATTTCGT
CTGAGGGGCGGGGGGAGGAGGGGATCATGGAGGGGCGTTGTGAGGAAGAG
AGGGAGATGAGTTGATTAGACGTTGACCAAAGCGTGATGGACCTCACAAC
ATAGCCCTAATCCACACCGAAGAGGATGACGCGGGAAAATATGTATGATC
TGGCCGGGGGGGACCGGGACGCCGGCGAGGGAGACAGGATCGCGTAACTG
CAGCGAAGCGGCATTTTTGCGGGAAAATAAAAATGAAGCAGGCAAACGTA
CGTGACAACTACGCACCTGATTGGAGATGCTGGCGAGTGGTTGCTCGTTT
GTCGCGAGGGAGATTGATGCTTCTTTCCTCAGCTCATGGACGCAGGCAAA
CGGGGCGCCCACCTCAAGGAAGGGGCACTGTGGTTGATCGAGTTTTCCGG
GAAGCTAGCTGTTTGCGGTCGGTCCATGCCCTACTTTTTTCAAGATGCAC
GAACGAGCGATTGAGCGCGGAGTGCGTGCTACATGTTTCCGAGTGTCATT
TTCTCTGCTGCTCTAAACAGGACAAGAATGCTACTTTCATGCCTACGCTA
TATGCATGGCATTTTTTGAGGTGCGTGCGTCCGTCACCTTAGCTTTTCAA
TCGACGGACGGGTGACGGACTTGGATGACCGACCACACCCCTTGTTGTAT
TGTGTGGTCATTTGCATTTACTTTTTGTTGAAGCTTTTGTCACTTGCACG
TGCGTTCGCATACGAGTGTTATTTTCGAGAACGGAACGAAGCAACCCTCG
TAAGGTCACGGCAGAAACGCTTGTGTATTTTTCATCTGCTTTTGTTGGCA
TTGGCGAAGAATGCCATTAGGAAAAGGGGGGTGTGGCGTTTTCCGCTGTC
AGTCTTCGTTCGACCGCGCGTTGAAAGTTTATCGAGTTTCCGTCGATTGT
GCAGTATCTGCTTGCTGGTTTGAAATGCTGCAGTCTGCTTGCTACGAAAG
ATAGGTTTGAAGTAGATATGTATCTGGTCCGTTTATTGTGGTGATGTGCT
TTTCATCCATGAAGGAAAGGGGAAAAAAATGAGTCATCGTAGTAGTAGTA
GCACAAAGAAATCCAATCGTGGTTGATTTGGTTTCGCTGTGCCTCTCTCC
CCATCCCCTTTGGAGTTATTTCAATGCTGATGCGGTCGAAAGCAACAACT
AATGTCATGAAATAATGAAATACGGGCGACCCCCCCGTGCGCGTCGGGAC
TAAAGTTTGTCTTGGACGGTACGTACCGTACTTCCCACCGCCGTGATGTT
CGGTATATTCTGCTGTTGGTCGCCCGGCTCGTTTCGCTTCTTCTCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:1642702..1650997-

>mRNA_P-fluviatile_contig12.1437.1 ID=mRNA_P-fluviatile_contig12.1437.1|Name=mRNA_P-fluviatile_contig12.1437.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1644bp|location=Sequence derived from alignment at P-fluviatile_contig12:1642702..1650997- (Porterinema fluviatile SAG_2381)
ATGGTGTACAACCCGCCGGTAGAGCGCGGCGAGGATGGCCAGCCCATCAA
GGACGGGGACGTGGTGCTCGACGTGCCCGTCAACGCGATGCGGCGCGGGG
CCTACGTGGAGCAGGCCACGCGGGCGACAGGCTGGGCCGCATTGTACGTC
GTGGCCTGGCTGCTGATGAGACTCTCGTGCTACGCCGGCCTCCCCGACGA
CTGCGAGCTGCCCGAGGAGCCACTTGAAGTGCTCACGATCCTGCTTGTCT
TGCTGGTCTTCTCCCTGGCGCAGATGGTGTACAACCCGCCGGTAGAGCGC
GGCGAGGATGGCCAGCCCATCAAGGACGGGGACGTGGTGCTCGACGTGCC
CGTCAACGCGATGCGGCGCGGGGCCTACGTGGAGCAGGCCACGCGGGCGA
CAGGCTGGGCCGCATTGTACGTCGTGGCCTGGCTGCTGATGAGACTCTCG
TGCTACGCCGGCCTCCCCGACGACTGCGAGCTGCCCGAGGAGCCACTTGA
AGTGCTCACGATCCTGCTTGTCTTGCTGGTCTTCTCCCTGGCGCAGGCAT
GGTTTTGCGAGATCACGGAGGAGAGAAGATTCCGTGACCTATCCACCAAG
ACTTACTTCCCCATCTTCCTGGTCGGAGCGCATGGTTTTGCGAGATCACG
GAGGAGAGAAGATTCCGTGACCTATCCACCAAGACTTACTTCCCCATCTT
CCTGGTCGGAGCCGCTCTGGCCCTGTCAGGCGCCTCGCGCGCCGAATCCC
TCCGCACCTCCCTCCAGGAGGAGAGGCGAGACCTGACCACCTTCCAAATA
ACGATCTTCATCATCCTGCTCATCATCACCGTGCTCGTGCTGCTGTGGCA
CTTCGCGGAGGCGTGGAAGGTTTTGCCGGGGGCGCATCTCATCTCCGGGC
TCGGGATGCCCCGCGTCGAGCGCTCTGGCCCTGTCAGGCGCCTCGCGCGC
CGAATCCCTCCGCACCTCCCTCCAGGAGGAGAGGCGAGACCTGACCACCT
TCCAAATAACGATCTTCATCATCCTGCTCATCATCACCGTGCTCGTGCTG
CTGTGGCACTTCGCGGAGGCGTGGAAGGTTTTGCCGGGGGCGCATCTCAT
CTCCGGGCTCGGGATGCCCCGCGTCGAGGTGCGCGAGGACCTACTGTCGA
TGTACGTGGCCTCTCGGCTGGCTATCCTGGCGTACTTCATCCTGTACTCA
GCCTTCTCCGTGGCGAGGAACGATGGCTGGGGCTACCAGTTGTACCTCCT
GGCGTGGGTCCTCTCGCTCTTCGCGCAGTTCAAGGGGTTCGTCAGCGTGT
TCTGGCTCGCCGTCACCACGGGCGTGTTCCTTCAAGGCATCGGGGTGCGC
GAGGACCTACTGTCGATGTACGTGGCCTCTCGGCTGGCTATCCTGGCGTA
CTTCATCCTGTACTCAGCCTTCTCCGTGGCGAGGAACGATGGCTGGGGCT
ACCAGTTGTACCTCCTGGCGTGGGTCCTCTCGCTCTTCGCGCAGTTCAAG
GGGTTCGTCAGCGTGTTCTGGCTCGCCGTCACCACGGGCGTGTTCCTTCA
AGGCATCGGGGCATATGGGATAAGCTTCCTGTGCGATCCCCGAGTGCAAT
GAGCATATGGGATAAGCTTCCTGTGCGATCCCCGAGTGCAATGA
back to top