mRNA_P-fluviatile_contig12.1433.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1433.1
Unique NamemRNA_P-fluviatile_contig12.1433.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1433.1 vs. uniprot
Match: D8LDF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF6_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 2.230e-69
Identity = 135/179 (75.42%), Postives = 148/179 (82.68%), Query Frame = 2
Query:  122 LLIQSKKIQQLTAKIDSMEIERQAVGQQIDALRMAVFEASTRAEQTAEQ----------------YKRDAVEAAVREITEDREAFAEGRRQASRRIEELEDVLEISLRAAGGVHRQLLELGLSCEDLAKANVHLSVQAQEAPAEDKPALAVAGEVIEAVVGVMRVMEGSGVFDILDPLE 610
            L+ QSKKIQQLTAKID ME ER+A+ QQ+ ALRMAVFEASTRAEQTAEQ                YKRDAVEAAVREI +DREAFAEGRR+A +RI ELED LEI+L+AAGGVHR+LLELGLSCEDL K +VHLSV AQEAPAEDKPALAVAGE IEAVVGVMR ME SGVFDILDP++
Sbjct:   72 LVAQSKKIQQLTAKIDGMESEREAMAQQVAALRMAVFEASTRAEQTAEQLIKDSASFVHRGVLLQYKRDAVEAAVREIAQDREAFAEGRREAVKRIGELEDALEIALKAAGGVHRKLLELGLSCEDLGKTSVHLSVAAQEAPAEDKPALAVAGETIEAVVGVMRAMERSGVFDILDPVD 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF6_ECTSI2.230e-6975.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1606711..1611913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size924
Cds size900
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.855608-CDS-P-fluviatile_contig12:1606710..16071271622815509.855608-CDS-P-fluviatile_contig12:1606710..1607127Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1606711..1607127 -
1693562087.523102-CDS-P-fluviatile_contig12:1606710..16071271693562087.523102-CDS-P-fluviatile_contig12:1606710..1607127Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1606711..1607127 -
1622815509.8692904-CDS-P-fluviatile_contig12:1608183..16083261622815509.8692904-CDS-P-fluviatile_contig12:1608183..1608326Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1608184..1608326 -
1693562087.532923-CDS-P-fluviatile_contig12:1608183..16083261693562087.532923-CDS-P-fluviatile_contig12:1608183..1608326Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1608184..1608326 -
1622815509.8796825-CDS-P-fluviatile_contig12:1608786..16088801622815509.8796825-CDS-P-fluviatile_contig12:1608786..1608880Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1608787..1608880 -
1693562087.542747-CDS-P-fluviatile_contig12:1608786..16088801693562087.542747-CDS-P-fluviatile_contig12:1608786..1608880Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1608787..1608880 -
1622815509.8897653-CDS-P-fluviatile_contig12:1610310..16103731622815509.8897653-CDS-P-fluviatile_contig12:1610310..1610373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1610311..1610373 -
1693562087.552508-CDS-P-fluviatile_contig12:1610310..16103731693562087.552508-CDS-P-fluviatile_contig12:1610310..1610373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1610311..1610373 -
1622815509.8991258-CDS-P-fluviatile_contig12:1611576..16116601622815509.8991258-CDS-P-fluviatile_contig12:1611576..1611660Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1611577..1611660 -
1693562087.5620067-CDS-P-fluviatile_contig12:1611576..16116601693562087.5620067-CDS-P-fluviatile_contig12:1611576..1611660Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1611577..1611660 -
1622815509.9102085-CDS-P-fluviatile_contig12:1611792..16118911622815509.9102085-CDS-P-fluviatile_contig12:1611792..1611891Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1611793..1611891 -
1693562087.5709915-CDS-P-fluviatile_contig12:1611792..16118911693562087.5709915-CDS-P-fluviatile_contig12:1611792..1611891Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1611793..1611891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.9246736-UTR-P-fluviatile_contig12:1611891..16119131622815509.9246736-UTR-P-fluviatile_contig12:1611891..1611913Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1611892..1611913 -
1693562087.5797927-UTR-P-fluviatile_contig12:1611891..16119131693562087.5797927-UTR-P-fluviatile_contig12:1611891..1611913Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1611892..1611913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1433.1prot_P-fluviatile_contig12.1433.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1606711..1611891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1433.1

>prot_P-fluviatile_contig12.1433.1 ID=prot_P-fluviatile_contig12.1433.1|Name=mRNA_P-fluviatile_contig12.1433.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=300bp
MLLEEVQVGSSYDATMASAPDADFAEGHAKTERLLIQSKKIQQLTAKIDS
MEIERQAVGQQIDALRMAVFEASTRAEQTAEQYKRDAVEAAVREITEDRE
AFAEGRRQASRRIEELEDVLEISLRAAGGVHRQLLELGLSCEDLAKANVH
LSVQAQEAPAEDKPALAVAGEVIEAVVGVMRVMEGSGVFDILDPLEGDDE
ELQEEAEAQRVSEEPRDPSLLLPTTDSATPRAASDCKPPKAVAAVDVAEA
GGSDGIGSAGRGSNGSTSSRGAAPARSMAAAAATAAPVATAAVAATASVP
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mRNA from alignment at P-fluviatile_contig12:1606711..1611913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1433.1 ID=mRNA_P-fluviatile_contig12.1433.1|Name=mRNA_P-fluviatile_contig12.1433.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5203bp|location=Sequence derived from alignment at P-fluviatile_contig12:1606711..1611913- (Porterinema fluviatile SAG_2381)
GCCGTGACTTGGGGTGGACGGTATGCTGCTGGAAGAGGTCCAGGTGGGAA GCAGCTATGATGCAACGATGGCGTCGGCCCCGGACGCGGACTTTGCTGAG GGGCACGCCAAGACGGAGAGAAGGGGACAGCAGTCAAAAAGCGGAGAATC GCCCCCAGCTGGCGGCGGCGGTGGCAGCGGCGGCAGCAGCAGCAGCATCA GCAGCATCAGCAGCAGTAGCGACAGCAGTGAGAAGCTCTTGATGAAACGG ACCCTCCTGATACAGAGCAAGAAGATACAGCAGCTGACGGCAAAGATTGA CAGCATGGAAATCGAGCGGCAGGCTGTCGGGCAGCAGGTACTTCACGCAT GACGGTGTATACAAGCCGCACACCTCAACCTCTTCCCCAACCTCCACTAA AGAGGCAGTTCCCGAAGCTCAAACGATCCCGAGATCCCAATTCTATCCGG AAAGATCTGATCAAGAGCTGCCCGAAAAACGTATAATTTTCAGCATTTGC GCCCACTCGGTAGTGCAACAATGGAGCGTTGGACATCGGCTCCGAAGGAG GGTCTGGTGAACACGGTCGTTTACGAGATGCACACAGGGCTGGAGTATGG GCGACTTGCAACAGCAGTTTTGTGTGTTCCCAGACGCGCTCGAAACAGAA TCAAAACCATATTTGGTCTTGGCGGCCTTCGAGGTCGGGCGAATCGACCA TGGTTGCGGTCGCAATTTGTCAACACCACCCCAACAGTTTGGCACCTCGC GGTCATGTTGTGGGTGATTTGAGGTCGTACCCACCCCCTCCCCCCATCCC CCCATCACACGCACATGATCAAGCTCAAACTTGAGCGCATCCGGCCTGCG TCCGGTTGGTGTTTGCTCCACCCGTGTTGCGGATAAACGTGGTTGATTAC CCGCCGACGTGCACGCGGTATTTGCTTCGCCTTTTTTGTCCCCACACCCC ATACTCCGGTTTTCGCACTTTGAAATCATTTTGACATTTTCGTCAGCGGT CTACCTCGTTTGCATTCAGCAACAAGAGCAAAAGTGTCTGCTACCAGCAG TGCAGAAACAGAGGCTGGATTTTCTTGAAGATTTGTGTTTGACAATCATC ACATCCGTTATGCTGTGCAAGCGATGCCTGTTTGCATACGTGCCCGCGAG CTTATGTTCCATCGAAAAGCGTGCTCGAGCCATTTTATATTCCATCTAAA GCGTGCTCGACCACACCTGGTACTAGGTGCCATCTTCCGCTCGGCACAGG CTGCTTTGTACTGCTAGGTCTTTTTGGTGGACGCCACGGATGGAGTTGGC GACAGCCTACCCTATCTCGCATTTGTGATTTGTCTTGACTTCCAAGGCTT GACACACCCTTGAACTCGAACCCGAAGTCGTGTGTGCTAAAAACATTATG GGAGGAAATGTCACATATGCGGGGGCCAGGATGTCTCGTCCTTGATTTTT GTACCAAAAAGTCTAGCTTTTCGGGACCAGTCCCAATTGTTATCTTCTTA TTTCTCCAACCATTCGCTTGCATTCGCACTCGTACTTCAGATAGACGCGC TGCGTATGGCTGTGTTCGAGGCCAGCACCAGAGCGGAGCAAACAGCCGAG CAGGTGACAGTCCCATTGTCGACAGTCTCGTGAAATTCCCGTCTCCGTCG TTGCTCTCGGGGCCGTTGTTGTCAGTGTTCGAGTAGAGATTATGAGTAGA ACTTGCAGTAGTTTTGTTGCTGCTGCTGCTGCCGCCACCGCTGCTGCTAC TCTGTTGTTTTCCGGTATGCGCCCGCGAAAAGACAGGCACCGTTACAGCG GCAAGCACAGTACGCAGTAGGGAACACAGAGGTCCCCCTGTAGGTGCACA GGAGGTTGAACCGGCGCTATTTCGGTAACCGGCACTAGTCAACTAGCACG CAAGAGGGTCCAGTATCTGCACTTGCTTTTAGTAAGACACACAAGACCCT CATAACACAATATCTGATTGGATGCTATCCTCGGGAGCAATGACTGTACA ATTCGCCGCCGTTTCTCCGCGACGTCGCCTCCCTGAGTTTCATTTTCCGG TTGTGGCGCATTTCGACGGTGAATACCTCACCCTCGCTCGAGGCGATTTT CAAAGCCCAGAAATGCTCAATGGGCGGCTTTGTAACCGATCCCAATTCTT AGCTTGTCGAAAACCGCATGGATTGGCAATTGTGCCTGCTCGAGAATTTT GCACAGTAATCGCGGTTTGAAAATCGAGGTTTGGTTTGCAAGCCCTCATA TCCAGTGTGCACGACGACACAGCTCAATAACTTTAGAGCAGGGGGAGCAA GGAGGCAGGTGCGAGGTGGTCAATAGCCTACGCATTGGTGAGGAACACGT GCGCGGGGAAAAAATATGTTTAGTCAGAAGTAGTAGAGGGTAAGGGTAAG GGTTAGCGTTGGTTGTAACGCAACCCCCCAGTGGCTATTCCCCGATTTTT GTTAACTTTCATACGCAGGCAGTCCGTAGCCGCATGGGGAAAAAAACAAA GAAACTTTGTCAGGAATAGTTAGGGGGCATGGTAAGGTTTGGGTAAGCGT ATTGTGTCACGTACCGTCCCACTATGTATTTCCTGATTCTCCTTAATTTT CCTGCGTCGGCGGTCCGAGGTGGGCGGAGGGGGACGTGCTTTCTTGCAAC TGCACACTGCGAGAGGGCATGAGGTTTACCCGTCACCATCCGCTTTTTCG TGACGCATGTATGTTTGCTTTGGGTGATAAGCACCTTCCACTCGAAATTT ATTGTTCGGTTTTAAAGACAGGCGTGTCGGGAAAGAAAGAGCGCGTGTCG GAAACAAAAAGAGGGCACGAGGAATACGTACCACGGAGCAAAGGAGTCTA GTTTCGTTTCGCGGATTCATCGCTGGTCGCAAGCATTGATTCACGTCTCG TTCACACCCAGTAGCACACCTTCGACGTGCTCAGTTGTGCCGATCGATGA CGCTGGTTCGATATCATGGCGGGTTTTTCATCGTTCAAGTTGGTTCGCGT CCTTGTTTGCGCTTTTGACATACGAAAAAAAAGTACAAGAGGGACGCGGT TGAAGCGGCTGTGCGCGAGATCACCGAGGACAGGGAGGCCTTCGCCGAAG GACGCCGGCAAGCTTCGAGGCGAATAGGCAAGGGAAGGAGTGCAAATGAT ATTTTCTGGGTGCATTAATTTGAATTGTGTTAATCTTAAGTGTGTTGATC GAAGAGTTTTGAGGCAAGCGTTCGCTGAGGTACTTCGAATGAGGTGCGTA GTTTGAGGATGTTGATTTAGCATCACCGAAGACAGGGTGTGAGGTGAATA GGTGAGAAGTATACTCCGAGCAACACTTTCTTCTTGATGTAGCGATGCTG ATGGTGTTGAAGTTTGTTTTGAGTTTTGTTCGTTGACTGTGTTCGTTTTC ATTATGTTGATTTCAAGCGTGTTGTGTGTCGATTGAAATGTGTGGGTCGA AGGGTTTTGATGCAAGATCGATGGTCTCTCGGCCAGCGAAAGTATGGCTA CGAGTACACCCCTCTCCCCACCCAAGCGTGACATTTTGACCGCCCCTCCT CGCCGCTATCCCCTCGGCCGATGTCTGGCACCTGCAGAAGAGCTCGAGGA CGTGCTGGAGATTTCCTTGAGGGCGGCGGGAGGAGTTCATCGGCAGCTGC TGGAACTCGGATTATCGTGCGAAGACCTGGCCAAAGCAAACGTCCACCTC TCTGTGCAGGCCCAGGAGGCGCCTGCTGAGGTGGGTATTTGTGCTTTGAG TGGATTTATGGGTTCGGATGGGTGGATGGGTGGGTGGGAGGGTGGGAGGA TTCCGGTCGATGGATAGGTAGATGGATGGGTGGGTGGATGGGTGGGTGGA TTGACGGACGGATGGTTTACGAGTTCCAGGTGATTGATCTCGCAAAAAAT AGGGTTCACCGCTCCGTACAGGCGGAGGAGGTGCCTACTGAGGTAGGTCT CTTTTCTGTGATGGAGTGGATGTAGGAGTCGATGTAGTTGTTGATGGATG GATGGATGAGCAGGTGAATGAATGATGGTGCGTTGACGAATCCTGTGGAT GGATGGATAGGCGAAGGGTGTGCGGAACACGACCACGAAATTTCCCACCG CAACTCAAAAGATGCACTGCGCCTTCCACGATGCACGGCACCCCGAAAGA TTCACGGCACCTCGAAAGGCAAACCGCATCTGGAAAGGATCCGCTGCACC GAGAACGACACCCTCGCCTAGAAAAAGGTCCACCGCATCCGGGAAACTGC ACCGTAGATCGGACCTCGAGGGTCTGTTACAAAAATTTTCGCGATGGATT ACCGCTCTTCAACCAGGGCGGTGCAAGCGGTACGAGGCTACGCGTACCGG GTTATTGTTATCATTGCGCGGGTATTTGCTGGCATCTGCGCAAACATTTT TCTTCACAACTATGACGACACACAGCAACACACACAAGCTTGACGTGCCA AAGGCACCGCTTGAAATGCTGCCGATGCCACCAAGGCTGAAAAACGTACG GATCCTGCGTGAGTTTTTTGCGCCTCGTTTGAGCCCGTCCGTCGGCAGAA TCAGGCTCCGAATTTTAACGTCCTCGGCCCCTTACCCTAAAAAAATCCCC AGAAACTTTGTCGCATTATCTTTGCTGCCGTTGGCAGCTAGGCTTTCCGA CTATGTCCGTCAGCGTTTTGTACTTCATGTTTCATTCAGGCCTCGCAATA TCTAACAGGAATCGGCTCTTGTCTCGCCCACGTTGGCAACCCTCCTCCTA ATCGCAAACCCACCCCCGTCTGTCTGTCTCACGCAGGACAAGCCCGCGCT GGCAGTTGCCGGAGAGGTCATCGAGGCAGTCGTGGGAGTGATGCGCGTCA TGGAGGGGTCGGGAGTATTCGACATTCTCGACCCGTTGGAGGGTGACGAC GAGGAGTTGCAGGAGGAGGCGGAAGCCCAGCGCGTGTCCGAGGAACCACG GGACCCCTCGCTCTTGTTGCCGACCACCGACAGCGCAACGCCTCGTGCTG CCAGCGACTGTAAGCCTCCGAAGGCTGTGGCGGCTGTCGATGTCGCAGAG GCAGGCGGCAGTGACGGGATTGGTAGCGCCGGCCGCGGAAGCAACGGCAG CACCTCATCCCGAGGCGCCGCGCCGGCTCGCTCTATGGCGGCGGCCGCGG CGACCGCCGCCCCCGTCGCGACCGCCGCAGTCGCCGCCACCGCTTCCGTT CCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1606711..1611913-

>mRNA_P-fluviatile_contig12.1433.1 ID=mRNA_P-fluviatile_contig12.1433.1|Name=mRNA_P-fluviatile_contig12.1433.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1800bp|location=Sequence derived from alignment at P-fluviatile_contig12:1606711..1611913- (Porterinema fluviatile SAG_2381)
ATGCTGCTGGAAGAGGTCCAGGTGGGAAGCAGCTATGATGCAACGATGGC
GTCGGCCCCGGACGCGGACTTTGCTGAGGGGCACGCCAAGACGGAGAGAA
TGCTGCTGGAAGAGGTCCAGGTGGGAAGCAGCTATGATGCAACGATGGCG
TCGGCCCCGGACGCGGACTTTGCTGAGGGGCACGCCAAGACGGAGAGACT
CCTGATACAGAGCAAGAAGATACAGCAGCTGACGGCAAAGATTGACAGCA
TGGAAATCGAGCGGCAGGCTGTCGGGCAGCAGCTCCTGATACAGAGCAAG
AAGATACAGCAGCTGACGGCAAAGATTGACAGCATGGAAATCGAGCGGCA
GGCTGTCGGGCAGCAGATAGACGCGCTGCGTATGGCTGTGTTCGAGGCCA
GCACCAGAGCGGAGCAAACAGCCGAGCAGATAGACGCGCTGCGTATGGCT
GTGTTCGAGGCCAGCACCAGAGCGGAGCAAACAGCCGAGCAGTACAAGAG
GGACGCGGTTGAAGCGGCTGTGCGCGAGATCACCGAGGACAGGGAGGCCT
TCGCCGAAGGACGCCGGCAAGCTTCGAGGCGAATAGTACAAGAGGGACGC
GGTTGAAGCGGCTGTGCGCGAGATCACCGAGGACAGGGAGGCCTTCGCCG
AAGGACGCCGGCAAGCTTCGAGGCGAATAGAAGAGCTCGAGGACGTGCTG
GAGATTTCCTTGAGGGCGGCGGGAGGAGTTCATCGGCAGCTGCTGGAACT
CGGATTATCGTGCGAAGACCTGGCCAAAGCAAACGTCCACCTCTCTGTGC
AGGCCCAGGAGGCGCCTGCTGAGAAGAGCTCGAGGACGTGCTGGAGATTT
CCTTGAGGGCGGCGGGAGGAGTTCATCGGCAGCTGCTGGAACTCGGATTA
TCGTGCGAAGACCTGGCCAAAGCAAACGTCCACCTCTCTGTGCAGGCCCA
GGAGGCGCCTGCTGAGGACAAGCCCGCGCTGGCAGTTGCCGGAGAGGTCA
TCGAGGCAGTCGTGGGAGTGATGCGCGTCATGGAGGGGTCGGGAGTATTC
GACATTCTCGACCCGTTGGAGGGTGACGACGAGGAGTTGCAGGAGGAGGC
GGAAGCCCAGCGCGTGTCCGAGGAACCACGGGACCCCTCGCTCTTGTTGC
CGACCACCGACAGCGCAACGCCTCGTGCTGCCAGCGACTGTAAGCCTCCG
AAGGCTGTGGCGGCTGTCGATGTCGCAGAGGCAGGCGGCAGTGACGGGAT
TGGTAGCGCCGGCCGCGGAAGCAACGGCAGCACCTCATCCCGAGGCGCCG
CGCCGGCTCGCTCTATGGCGGCGGCCGCGGCGACCGCCGCCCCCGTCGCG
ACCGCCGCAGTCGCCGCCACCGCTTCCGTTCCGGACAAGCCCGCGCTGGC
AGTTGCCGGAGAGGTCATCGAGGCAGTCGTGGGAGTGATGCGCGTCATGG
AGGGGTCGGGAGTATTCGACATTCTCGACCCGTTGGAGGGTGACGACGAG
GAGTTGCAGGAGGAGGCGGAAGCCCAGCGCGTGTCCGAGGAACCACGGGA
CCCCTCGCTCTTGTTGCCGACCACCGACAGCGCAACGCCTCGTGCTGCCA
GCGACTGTAAGCCTCCGAAGGCTGTGGCGGCTGTCGATGTCGCAGAGGCA
GGCGGCAGTGACGGGATTGGTAGCGCCGGCCGCGGAAGCAACGGCAGCAC
CTCATCCCGAGGCGCCGCGCCGGCTCGCTCTATGGCGGCGGCCGCGGCGA
CCGCCGCCCCCGTCGCGACCGCCGCAGTCGCCGCCACCGCTTCCGTTCCG
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