|
|
Homology
BLAST of mRNA_P-fluviatile_contig12.1433.1 vs. uniprot
Match: D8LDF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF6_ECTSI) HSP 1 Score: 232 bits (591), Expect = 2.230e-69 Identity = 135/179 (75.42%), Postives = 148/179 (82.68%), Query Frame = 2
Query: 122 LLIQSKKIQQLTAKIDSMEIERQAVGQQIDALRMAVFEASTRAEQTAEQ----------------YKRDAVEAAVREITEDREAFAEGRRQASRRIEELEDVLEISLRAAGGVHRQLLELGLSCEDLAKANVHLSVQAQEAPAEDKPALAVAGEVIEAVVGVMRVMEGSGVFDILDPLE 610
L+ QSKKIQQLTAKID ME ER+A+ QQ+ ALRMAVFEASTRAEQTAEQ YKRDAVEAAVREI +DREAFAEGRR+A +RI ELED LEI+L+AAGGVHR+LLELGLSCEDL K +VHLSV AQEAPAEDKPALAVAGE IEAVVGVMR ME SGVFDILDP++
Sbjct: 72 LVAQSKKIQQLTAKIDGMESEREAMAQQVAALRMAVFEASTRAEQTAEQLIKDSASFVHRGVLLQYKRDAVEAAVREIAQDREAFAEGRREAVKRIGELEDALEIALKAAGGVHRKLLELGLSCEDLGKTSVHLSVAAQEAPAEDKPALAVAGETIEAVVGVMRAMERSGVFDILDPVD 250
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 924 |
| Cds size | 900 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815509.855608-CDS-P-fluviatile_contig12:1606710..1607127 | 1622815509.855608-CDS-P-fluviatile_contig12:1606710..1607127 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1606711..1607127 - |
| 1693562087.523102-CDS-P-fluviatile_contig12:1606710..1607127 | 1693562087.523102-CDS-P-fluviatile_contig12:1606710..1607127 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1606711..1607127 - |
| 1622815509.8692904-CDS-P-fluviatile_contig12:1608183..1608326 | 1622815509.8692904-CDS-P-fluviatile_contig12:1608183..1608326 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1608184..1608326 - |
| 1693562087.532923-CDS-P-fluviatile_contig12:1608183..1608326 | 1693562087.532923-CDS-P-fluviatile_contig12:1608183..1608326 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1608184..1608326 - |
| 1622815509.8796825-CDS-P-fluviatile_contig12:1608786..1608880 | 1622815509.8796825-CDS-P-fluviatile_contig12:1608786..1608880 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1608787..1608880 - |
| 1693562087.542747-CDS-P-fluviatile_contig12:1608786..1608880 | 1693562087.542747-CDS-P-fluviatile_contig12:1608786..1608880 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1608787..1608880 - |
| 1622815509.8897653-CDS-P-fluviatile_contig12:1610310..1610373 | 1622815509.8897653-CDS-P-fluviatile_contig12:1610310..1610373 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1610311..1610373 - |
| 1693562087.552508-CDS-P-fluviatile_contig12:1610310..1610373 | 1693562087.552508-CDS-P-fluviatile_contig12:1610310..1610373 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1610311..1610373 - |
| 1622815509.8991258-CDS-P-fluviatile_contig12:1611576..1611660 | 1622815509.8991258-CDS-P-fluviatile_contig12:1611576..1611660 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1611577..1611660 - |
| 1693562087.5620067-CDS-P-fluviatile_contig12:1611576..1611660 | 1693562087.5620067-CDS-P-fluviatile_contig12:1611576..1611660 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1611577..1611660 - |
| 1622815509.9102085-CDS-P-fluviatile_contig12:1611792..1611891 | 1622815509.9102085-CDS-P-fluviatile_contig12:1611792..1611891 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1611793..1611891 - |
| 1693562087.5709915-CDS-P-fluviatile_contig12:1611792..1611891 | 1693562087.5709915-CDS-P-fluviatile_contig12:1611792..1611891 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1611793..1611891 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815509.9246736-UTR-P-fluviatile_contig12:1611891..1611913 | 1622815509.9246736-UTR-P-fluviatile_contig12:1611891..1611913 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig12 1611892..1611913 - |
| 1693562087.5797927-UTR-P-fluviatile_contig12:1611891..1611913 | 1693562087.5797927-UTR-P-fluviatile_contig12:1611891..1611913 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig12 1611892..1611913 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1433.1 >prot_P-fluviatile_contig12.1433.1 ID=prot_P-fluviatile_contig12.1433.1|Name=mRNA_P-fluviatile_contig12.1433.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=300bp
MLLEEVQVGSSYDATMASAPDADFAEGHAKTERLLIQSKKIQQLTAKIDS MEIERQAVGQQIDALRMAVFEASTRAEQTAEQYKRDAVEAAVREITEDRE AFAEGRRQASRRIEELEDVLEISLRAAGGVHRQLLELGLSCEDLAKANVH LSVQAQEAPAEDKPALAVAGEVIEAVVGVMRVMEGSGVFDILDPLEGDDE ELQEEAEAQRVSEEPRDPSLLLPTTDSATPRAASDCKPPKAVAAVDVAEA GGSDGIGSAGRGSNGSTSSRGAAPARSMAAAAATAAPVATAAVAATASVP back to topmRNA from alignment at P-fluviatile_contig12:1606711..1611913- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig12.1433.1 ID=mRNA_P-fluviatile_contig12.1433.1|Name=mRNA_P-fluviatile_contig12.1433.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5203bp|location=Sequence derived from alignment at P-fluviatile_contig12:1606711..1611913- (Porterinema fluviatile SAG_2381) GCCGTGACTTGGGGTGGACGGTATGCTGCTGGAAGAGGTCCAGGTGGGAA
GCAGCTATGATGCAACGATGGCGTCGGCCCCGGACGCGGACTTTGCTGAG
GGGCACGCCAAGACGGAGAGAAGGGGACAGCAGTCAAAAAGCGGAGAATC
GCCCCCAGCTGGCGGCGGCGGTGGCAGCGGCGGCAGCAGCAGCAGCATCA
GCAGCATCAGCAGCAGTAGCGACAGCAGTGAGAAGCTCTTGATGAAACGG
ACCCTCCTGATACAGAGCAAGAAGATACAGCAGCTGACGGCAAAGATTGA
CAGCATGGAAATCGAGCGGCAGGCTGTCGGGCAGCAGGTACTTCACGCAT
GACGGTGTATACAAGCCGCACACCTCAACCTCTTCCCCAACCTCCACTAA
AGAGGCAGTTCCCGAAGCTCAAACGATCCCGAGATCCCAATTCTATCCGG
AAAGATCTGATCAAGAGCTGCCCGAAAAACGTATAATTTTCAGCATTTGC
GCCCACTCGGTAGTGCAACAATGGAGCGTTGGACATCGGCTCCGAAGGAG
GGTCTGGTGAACACGGTCGTTTACGAGATGCACACAGGGCTGGAGTATGG
GCGACTTGCAACAGCAGTTTTGTGTGTTCCCAGACGCGCTCGAAACAGAA
TCAAAACCATATTTGGTCTTGGCGGCCTTCGAGGTCGGGCGAATCGACCA
TGGTTGCGGTCGCAATTTGTCAACACCACCCCAACAGTTTGGCACCTCGC
GGTCATGTTGTGGGTGATTTGAGGTCGTACCCACCCCCTCCCCCCATCCC
CCCATCACACGCACATGATCAAGCTCAAACTTGAGCGCATCCGGCCTGCG
TCCGGTTGGTGTTTGCTCCACCCGTGTTGCGGATAAACGTGGTTGATTAC
CCGCCGACGTGCACGCGGTATTTGCTTCGCCTTTTTTGTCCCCACACCCC
ATACTCCGGTTTTCGCACTTTGAAATCATTTTGACATTTTCGTCAGCGGT
CTACCTCGTTTGCATTCAGCAACAAGAGCAAAAGTGTCTGCTACCAGCAG
TGCAGAAACAGAGGCTGGATTTTCTTGAAGATTTGTGTTTGACAATCATC
ACATCCGTTATGCTGTGCAAGCGATGCCTGTTTGCATACGTGCCCGCGAG
CTTATGTTCCATCGAAAAGCGTGCTCGAGCCATTTTATATTCCATCTAAA
GCGTGCTCGACCACACCTGGTACTAGGTGCCATCTTCCGCTCGGCACAGG
CTGCTTTGTACTGCTAGGTCTTTTTGGTGGACGCCACGGATGGAGTTGGC
GACAGCCTACCCTATCTCGCATTTGTGATTTGTCTTGACTTCCAAGGCTT
GACACACCCTTGAACTCGAACCCGAAGTCGTGTGTGCTAAAAACATTATG
GGAGGAAATGTCACATATGCGGGGGCCAGGATGTCTCGTCCTTGATTTTT
GTACCAAAAAGTCTAGCTTTTCGGGACCAGTCCCAATTGTTATCTTCTTA
TTTCTCCAACCATTCGCTTGCATTCGCACTCGTACTTCAGATAGACGCGC
TGCGTATGGCTGTGTTCGAGGCCAGCACCAGAGCGGAGCAAACAGCCGAG
CAGGTGACAGTCCCATTGTCGACAGTCTCGTGAAATTCCCGTCTCCGTCG
TTGCTCTCGGGGCCGTTGTTGTCAGTGTTCGAGTAGAGATTATGAGTAGA
ACTTGCAGTAGTTTTGTTGCTGCTGCTGCTGCCGCCACCGCTGCTGCTAC
TCTGTTGTTTTCCGGTATGCGCCCGCGAAAAGACAGGCACCGTTACAGCG
GCAAGCACAGTACGCAGTAGGGAACACAGAGGTCCCCCTGTAGGTGCACA
GGAGGTTGAACCGGCGCTATTTCGGTAACCGGCACTAGTCAACTAGCACG
CAAGAGGGTCCAGTATCTGCACTTGCTTTTAGTAAGACACACAAGACCCT
CATAACACAATATCTGATTGGATGCTATCCTCGGGAGCAATGACTGTACA
ATTCGCCGCCGTTTCTCCGCGACGTCGCCTCCCTGAGTTTCATTTTCCGG
TTGTGGCGCATTTCGACGGTGAATACCTCACCCTCGCTCGAGGCGATTTT
CAAAGCCCAGAAATGCTCAATGGGCGGCTTTGTAACCGATCCCAATTCTT
AGCTTGTCGAAAACCGCATGGATTGGCAATTGTGCCTGCTCGAGAATTTT
GCACAGTAATCGCGGTTTGAAAATCGAGGTTTGGTTTGCAAGCCCTCATA
TCCAGTGTGCACGACGACACAGCTCAATAACTTTAGAGCAGGGGGAGCAA
GGAGGCAGGTGCGAGGTGGTCAATAGCCTACGCATTGGTGAGGAACACGT
GCGCGGGGAAAAAATATGTTTAGTCAGAAGTAGTAGAGGGTAAGGGTAAG
GGTTAGCGTTGGTTGTAACGCAACCCCCCAGTGGCTATTCCCCGATTTTT
GTTAACTTTCATACGCAGGCAGTCCGTAGCCGCATGGGGAAAAAAACAAA
GAAACTTTGTCAGGAATAGTTAGGGGGCATGGTAAGGTTTGGGTAAGCGT
ATTGTGTCACGTACCGTCCCACTATGTATTTCCTGATTCTCCTTAATTTT
CCTGCGTCGGCGGTCCGAGGTGGGCGGAGGGGGACGTGCTTTCTTGCAAC
TGCACACTGCGAGAGGGCATGAGGTTTACCCGTCACCATCCGCTTTTTCG
TGACGCATGTATGTTTGCTTTGGGTGATAAGCACCTTCCACTCGAAATTT
ATTGTTCGGTTTTAAAGACAGGCGTGTCGGGAAAGAAAGAGCGCGTGTCG
GAAACAAAAAGAGGGCACGAGGAATACGTACCACGGAGCAAAGGAGTCTA
GTTTCGTTTCGCGGATTCATCGCTGGTCGCAAGCATTGATTCACGTCTCG
TTCACACCCAGTAGCACACCTTCGACGTGCTCAGTTGTGCCGATCGATGA
CGCTGGTTCGATATCATGGCGGGTTTTTCATCGTTCAAGTTGGTTCGCGT
CCTTGTTTGCGCTTTTGACATACGAAAAAAAAGTACAAGAGGGACGCGGT
TGAAGCGGCTGTGCGCGAGATCACCGAGGACAGGGAGGCCTTCGCCGAAG
GACGCCGGCAAGCTTCGAGGCGAATAGGCAAGGGAAGGAGTGCAAATGAT
ATTTTCTGGGTGCATTAATTTGAATTGTGTTAATCTTAAGTGTGTTGATC
GAAGAGTTTTGAGGCAAGCGTTCGCTGAGGTACTTCGAATGAGGTGCGTA
GTTTGAGGATGTTGATTTAGCATCACCGAAGACAGGGTGTGAGGTGAATA
GGTGAGAAGTATACTCCGAGCAACACTTTCTTCTTGATGTAGCGATGCTG
ATGGTGTTGAAGTTTGTTTTGAGTTTTGTTCGTTGACTGTGTTCGTTTTC
ATTATGTTGATTTCAAGCGTGTTGTGTGTCGATTGAAATGTGTGGGTCGA
AGGGTTTTGATGCAAGATCGATGGTCTCTCGGCCAGCGAAAGTATGGCTA
CGAGTACACCCCTCTCCCCACCCAAGCGTGACATTTTGACCGCCCCTCCT
CGCCGCTATCCCCTCGGCCGATGTCTGGCACCTGCAGAAGAGCTCGAGGA
CGTGCTGGAGATTTCCTTGAGGGCGGCGGGAGGAGTTCATCGGCAGCTGC
TGGAACTCGGATTATCGTGCGAAGACCTGGCCAAAGCAAACGTCCACCTC
TCTGTGCAGGCCCAGGAGGCGCCTGCTGAGGTGGGTATTTGTGCTTTGAG
TGGATTTATGGGTTCGGATGGGTGGATGGGTGGGTGGGAGGGTGGGAGGA
TTCCGGTCGATGGATAGGTAGATGGATGGGTGGGTGGATGGGTGGGTGGA
TTGACGGACGGATGGTTTACGAGTTCCAGGTGATTGATCTCGCAAAAAAT
AGGGTTCACCGCTCCGTACAGGCGGAGGAGGTGCCTACTGAGGTAGGTCT
CTTTTCTGTGATGGAGTGGATGTAGGAGTCGATGTAGTTGTTGATGGATG
GATGGATGAGCAGGTGAATGAATGATGGTGCGTTGACGAATCCTGTGGAT
GGATGGATAGGCGAAGGGTGTGCGGAACACGACCACGAAATTTCCCACCG
CAACTCAAAAGATGCACTGCGCCTTCCACGATGCACGGCACCCCGAAAGA
TTCACGGCACCTCGAAAGGCAAACCGCATCTGGAAAGGATCCGCTGCACC
GAGAACGACACCCTCGCCTAGAAAAAGGTCCACCGCATCCGGGAAACTGC
ACCGTAGATCGGACCTCGAGGGTCTGTTACAAAAATTTTCGCGATGGATT
ACCGCTCTTCAACCAGGGCGGTGCAAGCGGTACGAGGCTACGCGTACCGG
GTTATTGTTATCATTGCGCGGGTATTTGCTGGCATCTGCGCAAACATTTT
TCTTCACAACTATGACGACACACAGCAACACACACAAGCTTGACGTGCCA
AAGGCACCGCTTGAAATGCTGCCGATGCCACCAAGGCTGAAAAACGTACG
GATCCTGCGTGAGTTTTTTGCGCCTCGTTTGAGCCCGTCCGTCGGCAGAA
TCAGGCTCCGAATTTTAACGTCCTCGGCCCCTTACCCTAAAAAAATCCCC
AGAAACTTTGTCGCATTATCTTTGCTGCCGTTGGCAGCTAGGCTTTCCGA
CTATGTCCGTCAGCGTTTTGTACTTCATGTTTCATTCAGGCCTCGCAATA
TCTAACAGGAATCGGCTCTTGTCTCGCCCACGTTGGCAACCCTCCTCCTA
ATCGCAAACCCACCCCCGTCTGTCTGTCTCACGCAGGACAAGCCCGCGCT
GGCAGTTGCCGGAGAGGTCATCGAGGCAGTCGTGGGAGTGATGCGCGTCA
TGGAGGGGTCGGGAGTATTCGACATTCTCGACCCGTTGGAGGGTGACGAC
GAGGAGTTGCAGGAGGAGGCGGAAGCCCAGCGCGTGTCCGAGGAACCACG
GGACCCCTCGCTCTTGTTGCCGACCACCGACAGCGCAACGCCTCGTGCTG
CCAGCGACTGTAAGCCTCCGAAGGCTGTGGCGGCTGTCGATGTCGCAGAG
GCAGGCGGCAGTGACGGGATTGGTAGCGCCGGCCGCGGAAGCAACGGCAG
CACCTCATCCCGAGGCGCCGCGCCGGCTCGCTCTATGGCGGCGGCCGCGG
CGACCGCCGCCCCCGTCGCGACCGCCGCAGTCGCCGCCACCGCTTCCGTT
CCG back to topCoding sequence (CDS) from alignment at P-fluviatile_contig12:1606711..1611913- >mRNA_P-fluviatile_contig12.1433.1 ID=mRNA_P-fluviatile_contig12.1433.1|Name=mRNA_P-fluviatile_contig12.1433.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1800bp|location=Sequence derived from alignment at P-fluviatile_contig12:1606711..1611913- (Porterinema fluviatile SAG_2381) ATGCTGCTGGAAGAGGTCCAGGTGGGAAGCAGCTATGATGCAACGATGGC GTCGGCCCCGGACGCGGACTTTGCTGAGGGGCACGCCAAGACGGAGAGAA TGCTGCTGGAAGAGGTCCAGGTGGGAAGCAGCTATGATGCAACGATGGCG TCGGCCCCGGACGCGGACTTTGCTGAGGGGCACGCCAAGACGGAGAGACT CCTGATACAGAGCAAGAAGATACAGCAGCTGACGGCAAAGATTGACAGCA TGGAAATCGAGCGGCAGGCTGTCGGGCAGCAGCTCCTGATACAGAGCAAG AAGATACAGCAGCTGACGGCAAAGATTGACAGCATGGAAATCGAGCGGCA GGCTGTCGGGCAGCAGATAGACGCGCTGCGTATGGCTGTGTTCGAGGCCA GCACCAGAGCGGAGCAAACAGCCGAGCAGATAGACGCGCTGCGTATGGCT GTGTTCGAGGCCAGCACCAGAGCGGAGCAAACAGCCGAGCAGTACAAGAG GGACGCGGTTGAAGCGGCTGTGCGCGAGATCACCGAGGACAGGGAGGCCT TCGCCGAAGGACGCCGGCAAGCTTCGAGGCGAATAGTACAAGAGGGACGC GGTTGAAGCGGCTGTGCGCGAGATCACCGAGGACAGGGAGGCCTTCGCCG AAGGACGCCGGCAAGCTTCGAGGCGAATAGAAGAGCTCGAGGACGTGCTG GAGATTTCCTTGAGGGCGGCGGGAGGAGTTCATCGGCAGCTGCTGGAACT CGGATTATCGTGCGAAGACCTGGCCAAAGCAAACGTCCACCTCTCTGTGC AGGCCCAGGAGGCGCCTGCTGAGAAGAGCTCGAGGACGTGCTGGAGATTT CCTTGAGGGCGGCGGGAGGAGTTCATCGGCAGCTGCTGGAACTCGGATTA TCGTGCGAAGACCTGGCCAAAGCAAACGTCCACCTCTCTGTGCAGGCCCA GGAGGCGCCTGCTGAGGACAAGCCCGCGCTGGCAGTTGCCGGAGAGGTCA TCGAGGCAGTCGTGGGAGTGATGCGCGTCATGGAGGGGTCGGGAGTATTC GACATTCTCGACCCGTTGGAGGGTGACGACGAGGAGTTGCAGGAGGAGGC GGAAGCCCAGCGCGTGTCCGAGGAACCACGGGACCCCTCGCTCTTGTTGC CGACCACCGACAGCGCAACGCCTCGTGCTGCCAGCGACTGTAAGCCTCCG AAGGCTGTGGCGGCTGTCGATGTCGCAGAGGCAGGCGGCAGTGACGGGAT TGGTAGCGCCGGCCGCGGAAGCAACGGCAGCACCTCATCCCGAGGCGCCG CGCCGGCTCGCTCTATGGCGGCGGCCGCGGCGACCGCCGCCCCCGTCGCG ACCGCCGCAGTCGCCGCCACCGCTTCCGTTCCGGACAAGCCCGCGCTGGC AGTTGCCGGAGAGGTCATCGAGGCAGTCGTGGGAGTGATGCGCGTCATGG AGGGGTCGGGAGTATTCGACATTCTCGACCCGTTGGAGGGTGACGACGAG GAGTTGCAGGAGGAGGCGGAAGCCCAGCGCGTGTCCGAGGAACCACGGGA CCCCTCGCTCTTGTTGCCGACCACCGACAGCGCAACGCCTCGTGCTGCCA GCGACTGTAAGCCTCCGAAGGCTGTGGCGGCTGTCGATGTCGCAGAGGCA GGCGGCAGTGACGGGATTGGTAGCGCCGGCCGCGGAAGCAACGGCAGCAC CTCATCCCGAGGCGCCGCGCCGGCTCGCTCTATGGCGGCGGCCGCGGCGA CCGCCGCCCCCGTCGCGACCGCCGCAGTCGCCGCCACCGCTTCCGTTCCG back to top
|