mRNA_P-fluviatile_contig12.1429.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1429.1
Unique NamemRNA_P-fluviatile_contig12.1429.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1429.1 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.730e-105
Identity = 168/265 (63.40%), Postives = 194/265 (73.21%), Query Frame = 1 
Query:    1 MHCPWTRKTRAWGYEVIRGIDEDDPTRVIRAFKRPTGLAFVDLNSQVENDYGGYAWTQWMPAHFGDTALHIALKWKRHRAVKALMSLRPDWTIPNEAGVTSEQLVLQMYGKSMAKFKDEQEREYEIDDMQGEDEAMRRLLNAEQAARDEVREKFLRELHAARTVGVEREADILFKHGRIILARDAAVFTTSTVRHQGCGVAAAADTSDITXXXXXXXXXXXXXXXXXXXXXAWVSHVCRELRRNRFAAQRAVVRRNRVPMFSPAR 795
            MH  WTRKTR WGYEVIRGIDEDDP RVIRAF+RPTGLAFVDLN+QVE DYGGYAWTQWM  HFGDTALHIALKWKR+RAVKA++SLRP+WTIPNEAGVT+EQLVL++YGKSMA+FKDEQEREYE D M+ E+EAMR L+ AEQAARD+ R  FL   HAART+G++ EA IL +HGR+++  D      +  RH       AAD +D +                      WV HVCRELRRNRFAA    +RRN VP  +P R
Sbjct:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVVIT-DGGKSNGNNHRHHPHD---AADNTDPSSQSDTSRAADSS---------GWVKHVCRELRRNRFAAHLGEMRRNVVPARAPPR 252
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BLAST of mRNA_P-fluviatile_contig12.1429.1 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.090e-35
Identity = 80/181 (44.20%), Postives = 110/181 (60.77%), Query Frame = 1 
Query:    4 HCPWTRKTRA-WGYEVIRGIDEDDPTRVIRAFKRPTGLAFVDLNSQVEND-YGGYAWTQWMPAHFGDTALHIALKWKRHRAVKALMSLRPDWTIPNEAGVTSEQLVLQMYGKSMAKFKDEQEREYEIDDMQGEDEAMRRLLNAEQAARDEVREKFLRELHAARTVGVEREADILFKHGRII 540
            H   TR+ R  WG++ IR ID+DDP  V+RA+K P    F D++  V+   YG YA+TQ M  H GDTALH+ALKW++ RA KAL+ L   W I N  GVT+E ++++ + K M   K +QEREY    M  ED+ M  LL  EQ+ +  +    LR+L+  RT G  +EA +L   GRI+
Sbjct:    3 HNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLP----FADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 179
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BLAST of mRNA_P-fluviatile_contig12.1429.1 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 4.290e-20
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:    1 MHCPWT-RKTRAWGYEVIRGIDEDDPTRVIRAFKRPTGLAFVDLNSQVENDYGGYAWTQWMPAHFGDTALHIALKWKRHRAVKALMSLRPDWTIPNEAGVTSEQLVLQMYGK 333
            MH P   + T +WGYEVIRGIDEDD  RV  A +   G     +N QV  +YGGY WT  +  ++GDTA+H+A+K+ R R  + L+ L PD T+ N  G T+ +L    Y K
Sbjct:    1 MHRPHLIQATSSWGYEVIRGIDEDDHERVTEALRSWRGKK---INIQVGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKK 109
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BLAST of mRNA_P-fluviatile_contig12.1429.1 vs. uniprot
Match: A0A7S2C3Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Y6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.020e-7
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  157 GYAWTQWMPAHFGDTALHIALKWKRHRAVKALMSL---RPD-----------WTIPNEAGVTSEQLVLQMYGKSMAKFKDEQEREYEIDDMQGEDEAMRRLLNAEQAAR 441
            GYAW+ W     GDT LH+A++WKR++A+K L  L   RPD           + + +  G T+E LV   +G+++A    +QE+    DD++  +EA R+     +AAR
Sbjct:    1 GYAWSAWSHRMAGDTVLHLAMRWKRYKALKGLYRLPAQRPDGMVGAGQPFFDYDVRDVDGQTAESLVTAEFGRTIANLWTKQEK----DDIEAAEEAARQAALEAEAAR 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH33_ECTSI1.730e-10563.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA1.090e-3544.20Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK4.290e-2044.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C3Y6_9STRA3.020e-734.86Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1577302..1578862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size858
Cds size858
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1429.1prot_P-fluviatile_contig12.1429.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1577302..1578862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.3170135-CDS-P-fluviatile_contig12:1577301..15774391622815509.3170135-CDS-P-fluviatile_contig12:1577301..1577439Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1577302..1577439 +
1693562087.2704804-CDS-P-fluviatile_contig12:1577301..15774391693562087.2704804-CDS-P-fluviatile_contig12:1577301..1577439Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1577302..1577439 +
1622815509.382267-CDS-P-fluviatile_contig12:1577831..15781061622815509.382267-CDS-P-fluviatile_contig12:1577831..1578106Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1577832..1578106 +
1693562087.2777445-CDS-P-fluviatile_contig12:1577831..15781061693562087.2777445-CDS-P-fluviatile_contig12:1577831..1578106Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1577832..1578106 +
1622815509.393772-CDS-P-fluviatile_contig12:1578417..15788621622815509.393772-CDS-P-fluviatile_contig12:1578417..1578862Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1578418..1578862 +
1693562087.2854025-CDS-P-fluviatile_contig12:1578417..15788621693562087.2854025-CDS-P-fluviatile_contig12:1578417..1578862Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1578418..1578862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1429.1

>prot_P-fluviatile_contig12.1429.1 ID=prot_P-fluviatile_contig12.1429.1|Name=mRNA_P-fluviatile_contig12.1429.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=286bp
MHCPWTRKTRAWGYEVIRGIDEDDPTRVIRAFKRPTGLAFVDLNSQVEND
YGGYAWTQWMPAHFGDTALHIALKWKRHRAVKALMSLRPDWTIPNEAGVT
SEQLVLQMYGKSMAKFKDEQEREYEIDDMQGEDEAMRRLLNAEQAARDEV
REKFLRELHAARTVGVEREADILFKHGRIILARDAAVFTTSTVRHQGCGV
AAAADTSDITAATPAAPAVGSGGGGGGGGGAAWVSHVCRELRRNRFAAQR
AVVRRNRVPMFSPARSVAGDGRGTTGRTSTASPSSI
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mRNA from alignment at P-fluviatile_contig12:1577302..1578862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1429.1 ID=mRNA_P-fluviatile_contig12.1429.1|Name=mRNA_P-fluviatile_contig12.1429.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1561bp|location=Sequence derived from alignment at P-fluviatile_contig12:1577302..1578862+ (Porterinema fluviatile SAG_2381)
ATGCACTGTCCATGGACACGGAAGACCCGCGCATGGGGATACGAGGTGAT
TCGTGGGATCGACGAGGACGACCCTACGCGCGTCATTCGAGCCTTCAAGC
GCCCGACGGGACTCGCTTTCGTCGACCTCAACTCGCAGGTAGGTGCAACT
CGATTCCTCGGGTCAAGGGCGACAAGCAGAGAGGATGAAGAACTCGAAGA
TATATGCGTGTGTCATATGATCTACTTCCTGTGCTGTTGTGCATGCAACA
GTGCAGCATAGATGTACCACCAACGACGATAGCGGAGGGACTCAGCATTT
CAAAAATGTTTTTTGTCGTAGCGCACGGTGGACGGCAGCATTTATCAAGA
TTTGGTCGCGATAGCGAGATCTGCAACCACCAACGCTCGTGACGAATGTC
TTCGTCCCCCTATGACGAGGTGTGTGAGCTCGGACACCTTAGTCTACCGA
TCCTTTGGCTACGTGTGGTTCATGCCGCACTTCAGCGCACAGTTCAAGCT
ACTTGGATATTTGAATACAAACAAAATCAGGTCGAGAACGATTATGGAGG
CTACGCGTGGACGCAGTGGATGCCCGCACACTTCGGGGACACCGCCCTCC
ACATCGCTCTCAAATGGAAGCGTCACCGAGCAGTCAAGGCACTCATGTCC
CTTCGCCCGGACTGGACCATCCCGAACGAGGCCGGCGTTACGTCGGAGCA
GCTTGTGCTTCAAATGTACGGCAAGAGCATGGCGAAGTTCAAGGATGAGC
AGGAACGCGAGTATGAAATCGACGACATGCAAGGGGAAGATGAGGCCATG
CGAAGGTGAATTGCATGTGTGAACAGGCTTGAAATATGTTAAGTATATTT
CCTGCATATTAAATCTTGGAAAATGAGTCGGTGAGAAAAGGACTACTTGC
TACCACGGGCTTCATGAGCTTGCGCTAGATGCAGACAGTGTTTTTCTTTC
ATCGTTTCTACTTCCGACAAGCGTAACCCACTCTAAAAAGATCAAAATTC
CAGATGAGTGAATAGTTGGTGCCTGTCGACTCCAAAGTGCACGCTGTCCC
GGTTGAGACGGGTATGGACCTCGCTGACACATGTACACGCCGCCTTCCCC
CCCTGGGGCCGGAAAGGCTCCTGAATGCCGAGCAAGCGGCGCGCGACGAA
GTCCGGGAGAAATTCCTGCGAGAGCTGCACGCTGCTCGAACCGTCGGCGT
TGAGCGCGAAGCAGACATCCTCTTCAAGCACGGGCGGATAATCCTCGCCA
GGGATGCCGCCGTCTTCACCACCTCCACCGTTCGACATCAAGGCTGCGGT
GTCGCCGCCGCCGCCGATACCAGCGACATCACCGCCGCTACCCCCGCCGC
CCCTGCAGTCGGGAGCGGCGGCGGTGGCGGCGGTGGCGGCGGCGCCGCCT
GGGTGTCGCACGTCTGCCGCGAGCTACGCCGCAACCGCTTCGCCGCCCAG
CGGGCGGTTGTACGTCGGAACCGCGTGCCAATGTTCTCGCCCGCGCGTTC
CGTGGCTGGAGACGGACGGGGAACAACGGGCAGGACGAGCACGGCGTCCC
CTTCCTCCATT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1577302..1578862+

>mRNA_P-fluviatile_contig12.1429.1 ID=mRNA_P-fluviatile_contig12.1429.1|Name=mRNA_P-fluviatile_contig12.1429.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1716bp|location=Sequence derived from alignment at P-fluviatile_contig12:1577302..1578862+ (Porterinema fluviatile SAG_2381)
ATGCACTGTCCATGGACACGGAAGACCCGCGCATGGGGATACGAGGTGAT
TCGTGGGATCGACGAGGACGACCCTACGCGCGTCATTCGAGCCTTCAAGC
GCCCGACGGGACTCGCTTTCGTCGACCTCAACTCGCAGATGCACTGTCCA
TGGACACGGAAGACCCGCGCATGGGGATACGAGGTGATTCGTGGGATCGA
CGAGGACGACCCTACGCGCGTCATTCGAGCCTTCAAGCGCCCGACGGGAC
TCGCTTTCGTCGACCTCAACTCGCAGGTCGAGAACGATTATGGAGGCTAC
GCGTGGACGCAGTGGATGCCCGCACACTTCGGGGACACCGCCCTCCACAT
CGCTCTCAAATGGAAGCGTCACCGAGCAGTCAAGGCACTCATGTCCCTTC
GCCCGGACTGGACCATCCCGAACGAGGCCGGCGTTACGTCGGAGCAGCTT
GTGCTTCAAATGTACGGCAAGAGCATGGCGAAGTTCAAGGATGAGCAGGA
ACGCGAGTATGAAATCGACGACATGCAAGGGGAAGATGAGGCCATGCGAA
GGTCGAGAACGATTATGGAGGCTACGCGTGGACGCAGTGGATGCCCGCAC
ACTTCGGGGACACCGCCCTCCACATCGCTCTCAAATGGAAGCGTCACCGA
GCAGTCAAGGCACTCATGTCCCTTCGCCCGGACTGGACCATCCCGAACGA
GGCCGGCGTTACGTCGGAGCAGCTTGTGCTTCAAATGTACGGCAAGAGCA
TGGCGAAGTTCAAGGATGAGCAGGAACGCGAGTATGAAATCGACGACATG
CAAGGGGAAGATGAGGCCATGCGAAGGCTCCTGAATGCCGAGCAAGCGGC
GCGCGACGAAGTCCGGGAGAAATTCCTGCGAGAGCTGCACGCTGCTCGAA
CCGTCGGCGTTGAGCGCGAAGCAGACATCCTCTTCAAGCACGGGCGGATA
ATCCTCGCCAGGGATGCCGCCGTCTTCACCACCTCCACCGTTCGACATCA
AGGCTGCGGTGTCGCCGCCGCCGCCGATACCAGCGACATCACCGCCGCTA
CCCCCGCCGCCCCTGCAGTCGGGAGCGGCGGCGGTGGCGGCGGTGGCGGC
GGCGCCGCCTGGGTGTCGCACGTCTGCCGCGAGCTACGCCGCAACCGCTT
CGCCGCCCAGCGGGCGGTTGTACGTCGGAACCGCGTGCCAATGTTCTCGC
CCGCGCGTTCCGTGGCTGGAGACGGACGGGGAACAACGGGCAGGACGAGC
ACGGCGTCCCCTTCCTCCATTGCTCCTGAATGCCGAGCAAGCGGCGCGCG
ACGAAGTCCGGGAGAAATTCCTGCGAGAGCTGCACGCTGCTCGAACCGTC
GGCGTTGAGCGCGAAGCAGACATCCTCTTCAAGCACGGGCGGATAATCCT
CGCCAGGGATGCCGCCGTCTTCACCACCTCCACCGTTCGACATCAAGGCT
GCGGTGTCGCCGCCGCCGCCGATACCAGCGACATCACCGCCGCTACCCCC
GCCGCCCCTGCAGTCGGGAGCGGCGGCGGTGGCGGCGGTGGCGGCGGCGC
CGCCTGGGTGTCGCACGTCTGCCGCGAGCTACGCCGCAACCGCTTCGCCG
CCCAGCGGGCGGTTGTACGTCGGAACCGCGTGCCAATGTTCTCGCCCGCG
CGTTCCGTGGCTGGAGACGGACGGGGAACAACGGGCAGGACGAGCACGGC
GTCCCCTTCCTCCATT
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