mRNA_P-fluviatile_contig12.1428.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1428.1
Unique NamemRNA_P-fluviatile_contig12.1428.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1575251..1576954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.0497694-CDS-P-fluviatile_contig12:1575252..15753791622815486.0497694-CDS-P-fluviatile_contig12:1575252..1575379Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1575253..1575379 -
1693562043.3200517-CDS-P-fluviatile_contig12:1575252..15753791693562043.3200517-CDS-P-fluviatile_contig12:1575252..1575379Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1575253..1575379 -
1622815486.0638874-CDS-P-fluviatile_contig12:1576622..15769541622815486.0638874-CDS-P-fluviatile_contig12:1576622..1576954Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1576623..1576954 -
1693562043.3284461-CDS-P-fluviatile_contig12:1576622..15769541693562043.3284461-CDS-P-fluviatile_contig12:1576622..1576954Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1576623..1576954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1428.1prot_P-fluviatile_contig12.1428.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1575253..1576954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1428.1

>prot_P-fluviatile_contig12.1428.1 ID=prot_P-fluviatile_contig12.1428.1|Name=mRNA_P-fluviatile_contig12.1428.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
AELERIRSSEGRGRFAGDTELGMDPPKRGRGRPPKSRKPAAEQAQHDEVD
TAAAAAADMIDVEHGVVEAVTGIVAAAPSTADPVEVEEAATANDVAEAPD
VRRMLQASTESPQAGQAAAPAAATAAAVATAAGVGETGAASAAAVPISGK
KKR
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mRNA from alignment at P-fluviatile_contig12:1575251..1576954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1428.1 ID=mRNA_P-fluviatile_contig12.1428.1|Name=mRNA_P-fluviatile_contig12.1428.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1704bp|location=Sequence derived from alignment at P-fluviatile_contig12:1575251..1576954- (Porterinema fluviatile SAG_2381)
GCCGAGCTGGAACGAATAAGGAGCAGCGAGGGGAGAGGACGGTTTGCAGG
AGACACGGAACTAGGGATGGATCCACCCAAGAGAGGGCGAGGTCGACCAC
CAAAGTCTCGCAAGCCGGCGGCTGAACAGGCTCAGCATGACGAGGTAGAT
ACCGCGGCAGCCGCAGCAGCCGACATGATCGACGTTGAACACGGAGTTGT
GGAGGCAGTCACCGGCATCGTGGCAGCAGCACCGTCCACGGCGGACCCGG
TAGAAGTGGAGGAGGCTGCAACAGCGAACGACGTGGCTGAAGCTCCGGAT
GTGCGACGTATGCTGCAGGCATCGACGGAAAGGTACGTGACTAGGCAGAT
CACACGATTGCAGAGTACACACGAGGAGCCTGTGCAGCAGCAGTCGCGTT
CATTGTGGGCGAGAAGTCGTGGCTAAGGGGTAGCGCGTGCAGCATAGCTC
GCTTAAGTATGTGCCACATACGCCTGGATGCACGTATATGTGCGCGCTGA
CCTCTGCGTGTGCATTTGTTCACTATTTTTCCCAGGATAAACGTCGTTCG
TTGAGAGGAGAGAAGCTTCAGAAACAGGTGGACGTGTACTCTCCGGCACC
CTTCTTGTCGACGTCGCGCTCGACGCGGGCACGAGCCCGTCGCTCCTGCC
ATGGATGAAAACTGCACTCTCATGTGATGCTGGTTGACATTCTATGCCAC
GGTTCATTGCCGTGTGCGAACGCCAGATTGCATTTCTCTGCTTGTGTGTG
GCAAGTGGCGTAGAGCGGGGCTCGTTGAAATCCAAGCAGGACTGTGCACC
GCACAGCCAGTCTAAAGCTCCGTACTGTAGACGTGCAAAGTTCGATACTT
GCTATGGCATTCACTGCCGGAGGATATGGTGCCTGGATATGCCCCGGGGT
TCGCGTTGCATGTAAAACCGAGCGGAACACGTCGTGATGCCATCCTCTGT
TGGGCGCCCGGGCCCGCCGCCTCACCGCCTCGTCGCTCTCGCTCGACACA
TCTCCCCAAGCCGACCGTTCTCCTTGTGGTTCGGCATGTAGAAGCTGACA
TCAAACGATCAGACCATTAGATGCCAGCGGCTGACTGTTTCGAGGCTGGA
AGGGTCATCGCGGTGATCGACACGAAAACTCACAAGTTCGGAGTTTGAGA
TCAGCTGCACGCTGACTGACCTCATGGTTTAAAATGCATTTGTCGAAGGC
AAGGAGAGCACGATTAAAGTGAGAGGGGAAAACAATTAAGGACATGTACA
GTTAAGACCACGTCATCGCAAGGGTAGCACACGTGTGAGCATCTGATGGA
TTGGATCATCCCAAGAGTCGAATCCACTGACATTTCTTCTCGATCTTGAC
AGGCGGCTGCGCAGAACCGCCGGTCTGCCAGCAACAGGATTTTCATTGAG
ATGTCGAGCACAAAACAGCAGCGACCCTCGCCTCTCCTTCTCAGCCGTGT
GCCTAAAAATTCTTCACGGGCCTGTACATGAGACGCTAACGAGTATCGAT
TATCTCGGTCGGTGTGGTCGAAATTTGATCCCCGGCGTCACTATCTCCGC
CTCCTTGCCGCCGCCTCAAGAACAGTCCACAGGCCGGGCAGGCGGCTGCG
CCGGCAGCAGCAACAGCAGCGGCGGTAGCGACGGCGGCAGGGGTGGGAGA
GACCGGAGCGGCGTCGGCGGCGGCAGTCCCCATTTCTGGCAAGAAGAAGC
GCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1575251..1576954-

>mRNA_P-fluviatile_contig12.1428.1 ID=mRNA_P-fluviatile_contig12.1428.1|Name=mRNA_P-fluviatile_contig12.1428.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig12:1575251..1576954- (Porterinema fluviatile SAG_2381)
GCCGAGCTGGAACGAATAAGGAGCAGCGAGGGGAGAGGACGGTTTGCAGG
AGACACGGAACTAGGGATGGATCCACCCAAGAGAGGGCGAGGTCGACCAC
CAAAGTCTCGCAAGCCGGCGGCTGAACAGGCTCAGCATGACGAGGTAGAT
ACCGCGGCAGCCGCAGCAGCCGACATGATCGACGTTGAACACGGAGTTGT
GGAGGCAGTCACCGGCATCGTGGCAGCAGCACCGTCCACGGCGGACCCGG
TAGAAGTGGAGGAGGCTGCAACAGCGAACGACGTGGCTGAAGCTCCGGAT
GTGCGACGTATGCTGCAGGCATCGACGGAAAGGCCGAGCTGGAACGAATA
AGGAGCAGCGAGGGGAGAGGACGGTTTGCAGGAGACACGGAACTAGGGAT
GGATCCACCCAAGAGAGGGCGAGGTCGACCACCAAAGTCTCGCAAGCCGG
CGGCTGAACAGGCTCAGCATGACGAGGTAGATACCGCGGCAGCCGCAGCA
GCCGACATGATCGACGTTGAACACGGAGTTGTGGAGGCAGTCACCGGCAT
CGTGGCAGCAGCACCGTCCACGGCGGACCCGGTAGAAGTGGAGGAGGCTG
CAACAGCGAACGACGTGGCTGAAGCTCCGGATGTGCGACGTATGCTGCAG
GCATCGACGGAAAGTCCACAGGCCGGGCAGGCGGCTGCGCCGGCAGCAGC
AACAGCAGCGGCGGTAGCGACGGCGGCAGGGGTGGGAGAGACCGGAGCGG
CGTCGGCGGCGGCAGTCCCCATTTCTGGCAAGAAGAAGCGCTCCACAGGC
CGGGCAGGCGGCTGCGCCGGCAGCAGCAACAGCAGCGGCGGTAGCGACGG
CGGCAGGGGTGGGAGAGACCGGAGCGGCGTCGGCGGCGGCAGTCCCCATT
TCTGGCAAGAAGAAGCGC
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