mRNA_P-fluviatile_contig12.1405.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1405.1
Unique NamemRNA_P-fluviatile_contig12.1405.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.380e-37
Identity = 69/89 (77.53%), Postives = 78/89 (87.64%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 871
            +GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNGLTAK CKT
Sbjct:  175 LGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 263
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BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.480e-37
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT*EHPQPPGDVYRQTRFP 922
            +GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNGLTAKACKT +  +PP   +R T FP
Sbjct:  359 LGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT-QRVRPPHPPHR-TFFP 462
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BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.100e-36
Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 2 
Query:  611 KVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 871
            K++G YREMFEAWN +E+T  VLG  +WV+KAG  I RI RLG+T LSHLWQSRK+RLA GDRSCGNNAPSSRGRVVNGLTAKACKT
Sbjct:   84 KIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKACKT 170
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BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.930e-36
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT*EHPQPPG 895
            +GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNGLTAKACKT E+   PG
Sbjct:  609 LGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTPEYVLLPG 705
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BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 5.780e-36
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 871
            +GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNGLTAKACKT
Sbjct:  410 LGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498
[Close]
BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.240e-35
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT*EH 880
            +GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNGLTAKACKT E+
Sbjct:  432 LGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTLEY 523
[Close]
BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.330e-35
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 871
            +GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNG TA ACKT
Sbjct:  284 LGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGQTAMACKT 372
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BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5KRD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.510e-35
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 871
            +GK++G YREMFEAWN +E+T  V+G  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNGLTAK CKT
Sbjct:  427 LGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIARIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 515
[Close]
BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 3.330e-35
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 2 
Query:  602 GMGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 871
            G GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAIGDRSCGNNAPSSRGRVVNGLTAKACKT
Sbjct:  694 GWGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 783
[Close]
BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Match: A0A6H5L729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L729_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.330e-35
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 2 
Query:  605 MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLSHLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT*EH 880
            +GK++G YREMFEAWN +E+T  VLG  +WV+KAG DI RI RLG+T LSHLWQSRK+RLAI DRSCGNNAPSSR RVVN LTAKACKT E+
Sbjct:  230 LGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIRDRSCGNNAPSSRARVVNDLTAKACKTEEY 321
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCQ0_9PHAE1.380e-3777.53Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LRL5_9PHAE1.480e-3771.70Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJX4_9PHAE1.100e-3677.01Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE77_9PHAE2.930e-3675.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVX2_9PHAE5.780e-3678.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD24_9PHAE2.240e-3577.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J590_9PHAE2.330e-3576.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRD0_9PHAE2.510e-3576.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4L1_9PHAE3.330e-3578.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L729_9PHAE8.330e-3573.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1248591..1250781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog2880.D8LL78
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
EggNOG free text desc.glycine hydroxymethyltransferase activity
EggNOG OGsCOG0112@1,KOG2467@2759
EC2.1.2.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size2191
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1405.1prot_P-fluviatile_contig12.1405.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1249195..1249464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.8863578-UTR-P-fluviatile_contig12:1248590..12491941622815504.8863578-UTR-P-fluviatile_contig12:1248590..1249194Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1248591..1249194 +
1693562073.6997962-UTR-P-fluviatile_contig12:1248590..12491941693562073.6997962-UTR-P-fluviatile_contig12:1248590..1249194Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1248591..1249194 +
1622815504.937918-UTR-P-fluviatile_contig12:1249464..12507811622815504.937918-UTR-P-fluviatile_contig12:1249464..1250781Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1249465..1250781 +
1693562073.723918-UTR-P-fluviatile_contig12:1249464..12507811693562073.723918-UTR-P-fluviatile_contig12:1249464..1250781Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1249465..1250781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.899272-CDS-P-fluviatile_contig12:1249194..12494641622815504.899272-CDS-P-fluviatile_contig12:1249194..1249464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1249195..1249464 +
1693562073.7134569-CDS-P-fluviatile_contig12:1249194..12494641693562073.7134569-CDS-P-fluviatile_contig12:1249194..1249464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1249195..1249464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1405.1

>prot_P-fluviatile_contig12.1405.1 ID=prot_P-fluviatile_contig12.1405.1|Name=mRNA_P-fluviatile_contig12.1405.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=90bp
MGKVEGRYREMFEAWNSQEKTAVVLGQTKWVKKAGSDIGRIVRLGETCLS
HLWQSRKDRLAIGDRSCGNNAPSSRGRVVNGLTAKACKT*
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mRNA from alignment at P-fluviatile_contig12:1248591..1250781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1405.1 ID=mRNA_P-fluviatile_contig12.1405.1|Name=mRNA_P-fluviatile_contig12.1405.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2191bp|location=Sequence derived from alignment at P-fluviatile_contig12:1248591..1250781+ (Porterinema fluviatile SAG_2381)
CAGAACAACTTCGGCGGAGGAAGCGAGTTTTCCGTGAGCATCAAGGGTCT
TGCTATGCATCTTGGATCGACTGTCGGAGCCGAACTTCTCCATATCATAA
AAAGGAAGATATTGGGCTGACTATTGGAGCCCGGCAGATCCACAACCAAC
ATTAACGGGAAATAAAATCAACCTTTCATGCGTCTTTGTTTCGGCGGTAT
ATAGCCCCCTCTTGACTGTTGACAGTAGCTTGCGCAGAATTTGATGAAGC
AAGCACGTGGGATAAAGTGCATGATTGGTGATTATTGGGGGGTAAGGGGG
TAGGAGTCGACCCGCCGCACCACCTACCCCTTCATCTTCGTACATCAAAC
CAATATTGTTGCGGTTCCGGTCAACCTTCATTTTTCGGGGCAGGGGGGTT
GGTGAGACCCGCTTCCTAGTGGTGAAACCCATCTTGAGGGAGTTCAGCTA
GACGAGCAATACATCATGGCTCACCGAGGGAGCTGGGTGTTTTACACCGT
GACACGTGGTGATGGTACTTGACATCGTCGTGAATTGGCAATTTTACGCT
TGATCTTGATCAAGATACGGTGAGGCACAGTATCCGTCTCCCCCCGGAGA
CGGAATGGGAAAAGTAGAAGGAAGATACAGGGAGATGTTTGAGGCATGGA
ATAGCCAGGAGAAGACGGCGGTTGTACTGGGGCAAACGAAGTGGGTTAAG
AAGGCGGGAAGTGACATCGGTAGGATAGTTAGACTAGGAGAGACATGTTT
GAGCCACCTTTGGCAAAGTAGGAAGGACCGATTGGCCATCGGTGACCGGT
CCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTA
ACCGCTAAGGCATGCAAAACATAAGAGCACCCCCAACCCCCCGGAGACGT
TTACCGTCAGACCCGCTTTCCCTTGTGGTGGGCGTAGACGTGGATCATCT
GCACCGAGCGACGAGGTGCTTTGTGGACTCGCCGAGGGAGCACTGTTGAA
TAGTCGCTGGCAAGAACGGGGTCGGTCGAGTTTTGAAGAAATCGTCTGAG
AAAATGAAGCCGGTTTTCGATCTGGGGCTGTGTTGCAAATGGAATTCCGT
AAGGAGAAGGGCTCCCACTTGGGGAGGAAGCTAGGGGACACCGGTGTTTT
CGTCGACCAAGGGTTCCCGGTGATGGAATGGACAAGATCGGCCAAAACGA
TTGTCGATGCCGATTCCGTGAGTCGGACTAAAAGCAGTCGCCGATCGTGT
CGATCCAGTTATCCACATCCAACGCTATGACAGAAGATTTTTGAAGCCTC
GAGAACGTGTTGTATATTCGGAAGACGGCGTGCCCACGATGGCCAGCTGG
TTTTCGCTTACCAGCGTACATAATGGGCTAGAGGGGAGCCAGTCATCGCT
AAGAGTGCGCAGTTGCATGCTGCGCCCATCAAGGGCGAGGGGAGCCGATC
ATTCGCGAAGAAAAGGCCATCAACCCACCTACAAGGTTGCTGTCGACACC
AAACGTCCCCGCGTGCTTCTTTCTCCAGCACGACCAGAGGCAACTGAGAG
ACGGTTGTTGTGTGAATGATTACCCCCCCCCGCCCCCCCTTGGAGTACGA
GGATCACTAATGGATATCCGGCGTACATTAGTCGATTTACATGATGTTGC
CATCTTGTCCTTTTCCGTTGTTCGTATTCTCGGCGCATTAGAAATATACC
GATGCGTTCGGCCCAGATCTGAATGTCGGCTGGTGTTCTCCCTCTCGTTC
GGTAAAAAAGTCTTGAGATCGAACAAATTGAATCTAGGGTTCGAGATGCG
GGACTGACTCGACCGGGAAGGCAAATGAGAATGCGGGATGCGGAATGAAT
GATTCGCGGGACGGAATGTGGAGGGGGAGGGAAACCGAGAGCAAGGAGAG
GCCGTGTGCAGCTCGGCGGCAGGGTTTTGACAGCATGGGGAGGGCAGACG
CCCCCGAACGAAGTACATACCGCACCTGATGCCCGCCCCAGAAAAAGGGT
ATTGGTACGTCAGAAAGAGGTATTCACGGCGTGATCCCCGCGTATGCTTG
TACTCCACAGGAGGTGCCTTGATGATTCGAGGTCCTTTTTTTAGGGAGGG
GGGCGATAAAAATACTGAAATTGGTGCGAACAAAACCTGTGATTTTCCAT
CGACAGTAAACCGACCCGCCGTCGGGGCACCAGCCCATTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1248591..1250781+

>mRNA_P-fluviatile_contig12.1405.1 ID=mRNA_P-fluviatile_contig12.1405.1|Name=mRNA_P-fluviatile_contig12.1405.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=540bp|location=Sequence derived from alignment at P-fluviatile_contig12:1248591..1250781+ (Porterinema fluviatile SAG_2381)
ATGGGAAAAGTAGAAGGAAGATACAGGGAGATGTTTGAGGCATGGAATAG
CCAGGAGAAGACGGCGGTTGTACTGGGGCAAACGAAGTGGGTTAAGAAGG
CGGGAAGTGACATCGGTAGGATAGTTAGACTAGGAGAGACATGTTTGAGC
CACCTTTGGCAAAGTAGGAAGGACCGATTGGCCATCGGTGACCGGTCCTG
TGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACCG
CTAAGGCATGCAAAACATAAATGGGAAAAGTAGAAGGAAGATACAGGGAG
ATGTTTGAGGCATGGAATAGCCAGGAGAAGACGGCGGTTGTACTGGGGCA
AACGAAGTGGGTTAAGAAGGCGGGAAGTGACATCGGTAGGATAGTTAGAC
TAGGAGAGACATGTTTGAGCCACCTTTGGCAAAGTAGGAAGGACCGATTG
GCCATCGGTGACCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACG
CGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAACATAA
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