mRNA_P-fluviatile_contig12.1403.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1403.1
Unique NamemRNA_P-fluviatile_contig12.1403.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1226208..1226549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.3913813-UTR-P-fluviatile_contig12:1226207..12262281622815489.3913813-UTR-P-fluviatile_contig12:1226207..1226228Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1226208..1226228 +
1693562047.4822764-UTR-P-fluviatile_contig12:1226207..12262281693562047.4822764-UTR-P-fluviatile_contig12:1226207..1226228Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1226208..1226228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.4140408-CDS-P-fluviatile_contig12:1226228..12265491622815489.4140408-CDS-P-fluviatile_contig12:1226228..1226549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1226229..1226549 +
1693562047.4903622-CDS-P-fluviatile_contig12:1226228..12265491693562047.4903622-CDS-P-fluviatile_contig12:1226228..1226549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1226229..1226549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1403.1prot_P-fluviatile_contig12.1403.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1226229..1226549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1403.1

>prot_P-fluviatile_contig12.1403.1 ID=prot_P-fluviatile_contig12.1403.1|Name=mRNA_P-fluviatile_contig12.1403.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
MLWLRPEISPPVTKFSQRCTTLVFHRTLSSGTLPIRTKEVSVPGAHCTRV
GGRIIPVIRSRRNKVGGRPGWCDCFAEASLGRASKWYSKISPTRQRMSSL
HILLAS*
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mRNA from alignment at P-fluviatile_contig12:1226208..1226549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1403.1 ID=mRNA_P-fluviatile_contig12.1403.1|Name=mRNA_P-fluviatile_contig12.1403.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=342bp|location=Sequence derived from alignment at P-fluviatile_contig12:1226208..1226549+ (Porterinema fluviatile SAG_2381)
GCACGTTTTAGTTGCGAGCTAATGCTATGGTTACGACCTGAAATTTCTCC
ACCCGTCACAAAATTTTCTCAAAGATGCACTACACTTGTGTTCCATCGTA
CGCTCAGTTCGGGCACGTTGCCGATACGCACGAAGGAGGTAAGCGTTCCG
GGGGCTCATTGCACCAGAGTTGGAGGTAGAATCATTCCGGTGATTAGATC
GCGTCGAAACAAAGTTGGGGGCAGACCTGGATGGTGTGACTGCTTCGCCG
AAGCATCCCTGGGGCGAGCCTCAAAGTGGTATTCCAAGATATCGCCAACC
CGTCAACGCATGTCATCTCTGCACATTCTGCTTGCATCGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1226208..1226549+

>mRNA_P-fluviatile_contig12.1403.1 ID=mRNA_P-fluviatile_contig12.1403.1|Name=mRNA_P-fluviatile_contig12.1403.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig12:1226208..1226549+ (Porterinema fluviatile SAG_2381)
ATGCTATGGTTACGACCTGAAATTTCTCCACCCGTCACAAAATTTTCTCA
AAGATGCACTACACTTGTGTTCCATCGTACGCTCAGTTCGGGCACGTTGC
CGATACGCACGAAGGAGGTAAGCGTTCCGGGGGCTCATTGCACCAGAGTT
GGAGGTAGAATCATTCCGGTGATTAGATCGCGTCGAAACAAAGTTGGGGG
CAGACCTGGATGGTGTGACTGCTTCGCCGAAGCATCCCTGGGGCGAGCCT
CAAAGTGGTATTCCAAGATATCGCCAACCCGTCAACGCATGTCATCTCTG
CACATTCTGCTTGCATCGTAGATGCTATGGTTACGACCTGAAATTTCTCC
ACCCGTCACAAAATTTTCTCAAAGATGCACTACACTTGTGTTCCATCGTA
CGCTCAGTTCGGGCACGTTGCCGATACGCACGAAGGAGGTAAGCGTTCCG
GGGGCTCATTGCACCAGAGTTGGAGGTAGAATCATTCCGGTGATTAGATC
GCGTCGAAACAAAGTTGGGGGCAGACCTGGATGGTGTGACTGCTTCGCCG
AAGCATCCCTGGGGCGAGCCTCAAAGTGGTATTCCAAGATATCGCCAACC
CGTCAACGCATGTCATCTCTGCACATTCTGCTTGCATCGTAG
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