mRNA_P-fluviatile_contig12.1397.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1397.1 vs. uniprot
Match: D8LDL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL0_ECTSI) HSP 1 Score: 280 bits (717), Expect = 3.610e-89 Identity = 140/256 (54.69%), Postives = 170/256 (66.41%), Query Frame = 1
Query: 406 CGRPFNQS-ESEIPCVEMATLQDRDNGVGVFYDEAGCGLEANG-SVVGCDLNGVPNCRLCVFYRELYSRAVLGGEPVPFVDCPCCVPELYEYGGDIACDFTYPAALLPGETLAPSPAPRTAGGN-----------ETANGTVPAIPMEPCEIGAEGDTAAGAVPCVDIASEVDYVNGVGTFYEESCSGVGCSIAGFTDCRLCIFDRAAYNASGGIDDLVDCPCCVPITYKIFPDSSECIWPITPAPTPAPTTLEEF 1134
C RP+ S ESEIPCV+M T D+ +G G FYDE GCG +A SVVGC GV NCRLCVF R L+S +LGGE VPFVDCPCCVP+ YE GGDI C+F Y + + +P P + GN +T + P IPMEPCE A G+++A + CVDIAS VD+ +G+GT+YE C GVGC IAG DCR C+FD AY SGG +L CPCCVPITYK+ P+ SEC+WP TP+PT APTT EE+
Sbjct: 39 CERPYTWSNESEIPCVDMVTAVDKASGAGAFYDEEGCGPDAESISVVGCAHGGVGNCRLCVFNRGLFSETILGGEEVPFVDCPCCVPDTYEMGGDIDCEFAYSSPPVS------APTPVSVEGNASTPXXXXXEGDTNSTLAPTIPMEPCETSAGGNSSA--LLCVDIASAVDWDDGIGTYYESGCQGVGCDIAGHVDCRQCVFDSEAYATSGGNLELAACPCCVPITYKLRPEGSECVWPPTPSPTAAPTTAEEW 286
BLAST of mRNA_P-fluviatile_contig12.1397.1 vs. uniprot
Match: A0A6H5KW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW91_9PHAE) HSP 1 Score: 278 bits (710), Expect = 1.390e-86 Identity = 141/270 (52.22%), Postives = 166/270 (61.48%), Query Frame = 1
Query: 388 FSASDYCGRPFN-QSESEIPCVEMATLQDRDNGVGVFYDEAGC-GLEANGSVVGCDLNGVPNCRLCVFYRELYSRAVLGGEPVPFVDCPCCVPELYEYGGDIACDFTYPAALLPGETLAPSP--APRTAGG------------NETANGTVPAIP---------------MEPCEIGAEGDTAAGAVPCVDIASEVDYVNGVGTFYEESCSGVGCSIAGFTDCRLCIFDRAAYNASGGIDDLVDCPCCVPITYKIFPDSSECIWPITPAP 1104
F +C RP+ +ES+I CVEMAT QDR NGVG FYDE GC G ++ VGC L GVP+CRLCVF+R LYS+ +L GE VPFVDCPCCVPE+Y GGDI CDF AA +P PSP AP+ +E G P MEPCE+G GDT + CVDIAS +D NG+GT+YE +C G+GC IAG DCR CIFD AY ASGG D LV+CPCCVP+ Y++ PDSSEC WP TP P
Sbjct: 126 FPYYSFCERPYPFANESDILCVEMATDQDRANGVGAFYDELGCAGAQSGTGFVGCSLGGVPSCRLCVFHRALYSQTILNGEEVPFVDCPCCVPEVYGVGGDIDCDFVTSAAPIPVPAATPSPTMAPQXXXTMVSGVTSSPLVEDEARGGVATLAPVMXXXXXXXXXXTIAMEPCEVGVAGDTTGDSTLCVDIASTLDLANGIGTYYEANCEGLGCDIAGNVDCRQCIFDETAYAASGGTDALVECPCCVPVIYQLRPDSSECTWPATPTP 395
BLAST of mRNA_P-fluviatile_contig12.1397.1 vs. uniprot
Match: D8LN92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN92_ECTSI) HSP 1 Score: 260 bits (665), Expect = 8.560e-82 Identity = 133/247 (53.85%), Postives = 153/247 (61.94%), Query Frame = 1
Query: 454 MATLQDRDNGVGVFYDEAGC-GLEANGSVVGCDLNGVPNCRLCVFYRELYSRAVLGGEPVPFVDCPCCVPELYEYGGDIACDFT-------YPAALL-------------PGETLAPSPAPRTAGGNET---------ANGTVPAIPMEPCEIGAEGDTAAGAVPCVDIASEVDYVNGVGTFYEESCSGVGCSIAGFTDCRLCIFDRAAYNASGGIDDLVDCPCCVPITYKIFPDSSECIWPITPAP 1104
MAT DR NGVG FYDE GC G ++ VGC L VPNCRLCVF+R LYS+ +L GE VPFVDCPCCVPE+YE GGDI CDF PAA PG T AP + G T A P I MEPCE+G GDT + CVDI+S VD NG+GT+YE +C G+GC IAG DCR CIFD AY ASGG D LV+CPCCVP++Y++ PDSSEC WP TP+P
Sbjct: 1 MATDADRANGVGAFYDELGCAGAQSGTGFVGCSLGDVPNCRLCVFHRALYSQNILEGEEVPFVDCPCCVPEVYEVGGDIDCDFVASAPPIPVPAAXXXXXXXXXXXXXXXPGVTSAPPAEDEASVGVATLAXVMAVTPAPTAAPVIAMEPCEVGVAGDTTGDSTLCVDISSPVDLANGIGTYYEANCEGLGCDIAGNEDCRQCIFDETAYAASGGTDALVECPCCVPVSYQLRPDSSECTWPATPSP 247 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1397.1 >prot_P-fluviatile_contig12.1397.1 ID=prot_P-fluviatile_contig12.1397.1|Name=mRNA_P-fluviatile_contig12.1397.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=280bp MDTTEAPVTDAPETPGPTVPPQPTPPPTFSASDYCGRPFNQSESEIPCVEback to top mRNA from alignment at P-fluviatile_contig12:1120419..1127768+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1397.1 ID=mRNA_P-fluviatile_contig12.1397.1|Name=mRNA_P-fluviatile_contig12.1397.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7350bp|location=Sequence derived from alignment at P-fluviatile_contig12:1120419..1127768+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:1120419..1127768+ >mRNA_P-fluviatile_contig12.1397.1 ID=mRNA_P-fluviatile_contig12.1397.1|Name=mRNA_P-fluviatile_contig12.1397.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1680bp|location=Sequence derived from alignment at P-fluviatile_contig12:1120419..1127768+ (Porterinema fluviatile SAG_2381)back to top |