mRNA_P-fluviatile_contig12.1393.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1393.1
Unique NamemRNA_P-fluviatile_contig12.1393.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1393.1 vs. uniprot
Match: D8LDL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL3_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 8.410e-9
Identity = 44/89 (49.44%), Postives = 50/89 (56.18%), Query Frame = -2 
Query:  300 SFLRKEEGTSGGVLKKVTMFDLLEGGKARRMLKEGEEXXXXXEGNLKAGEGGGGLVFPDNLEEMMEEVRFLAKQDLDRKKQRHAHLEGK 566
            S L    G   GV KK +M DLLEG +A   +  GE        +       G LV PDNLE MMEEVR LA+QDLDR+K RH HL GK
Sbjct:  725 SRLSGRSGEEEGVFKKASMLDLLEGDQADGGVSGGEAKETGWSEDED-----GRLVLPDNLEGMMEEVRALAQQDLDRRKNRHPHLRGK 808
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BLAST of mRNA_P-fluviatile_contig12.1393.1 vs. uniprot
Match: A0A6H5L4T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.130e-8
Identity = 42/89 (47.19%), Postives = 49/89 (55.06%), Query Frame = -2 
Query:  300 SFLRKEEGTSGGVLKKVTMFDLLEGGKARRMLKEGEEXXXXXEGNLKAGEGGGGLVFPDNLEEMMEEVRFLAKQDLDRKKQRHAHLEGK 566
            S L    G   GV KK +M DLL+G +A      GE        +       G LV PDNLE MMEEVR LA+QDLDR++ RH HL GK
Sbjct:  814 SKLSGRSGKEEGVFKKASMLDLLQGDQADGGFSGGEPKETGWSEDED-----GRLVLPDNLEGMMEEVRALAQQDLDRRRNRHPHLRGK 897
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDL3_ECTSI8.410e-949.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4T9_9PHAE7.130e-847.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1084613..1085218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.34871-CDS-P-fluviatile_contig12:1084612..10852181622815489.34871-CDS-P-fluviatile_contig12:1084612..1085218Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1084613..1085218 +
1693562047.4745154-CDS-P-fluviatile_contig12:1084612..10852181693562047.4745154-CDS-P-fluviatile_contig12:1084612..1085218Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1084613..1085218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1393.1prot_P-fluviatile_contig12.1393.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1084613..1085218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1393.1

>prot_P-fluviatile_contig12.1393.1 ID=prot_P-fluviatile_contig12.1393.1|Name=mRNA_P-fluviatile_contig12.1393.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=202bp
KIVPVSTLSSSLSCCCSSRIRDSLIMSAKAASAWPSGSAYPAAAPAAAKG
SVAAALTPCLPKSSSSLSSTCPQSASSPTSLSSQSSSSSSSYSASSFCPN
FPSKCACRCFFLSRSCFARNLTSSIISSRLSGNTSPPPPSPAFRLPSPSS
SSSSPSFNMRRALPPSKRSNIVTFLRTPPEVPSSLRRNDFRSLPFAGEGY
PL
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mRNA from alignment at P-fluviatile_contig12:1084613..1085218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1393.1 ID=mRNA_P-fluviatile_contig12.1393.1|Name=mRNA_P-fluviatile_contig12.1393.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig12:1084613..1085218+ (Porterinema fluviatile SAG_2381)
AAAATCGTGCCGGTGTCGACACTCTCGTCATCGCTGAGCTGCTGCTGCTC
TTCGCGCATCCGCGATTCCCTCATCATGTCGGCGAAGGCGGCGTCCGCCT
GGCCTTCTGGCTCCGCATACCCAGCTGCCGCTCCTGCCGCTGCTAAGGGA
TCGGTGGCGGCGGCGCTTACGCCCTGCCTCCCGAAATCTTCCTCATCCTT
GTCCTCTACTTGCCCCCAATCCGCTTCGTCGCCAACGTCCCTCTCCTCCC
AGTCCTCTTCCTCCTCTTCATCATACTCCGCGTCTTCCTTCTGCCCCAAT
TTCCCCTCCAAGTGCGCGTGCCGTTGCTTCTTCCTGTCGAGGTCCTGCTT
CGCCAGAAACCTTACCTCTTCCATCATCTCCTCCAGATTGTCCGGGAACA
CCAGCCCACCGCCGCCTTCTCCGGCCTTCAGATTGCCTTCTCCCTCCTCC
TCCTCCTCCTCCCCCTCCTTCAACATGCGGCGTGCCTTGCCCCCCTCCAA
GAGATCAAACATAGTCACCTTTTTGAGAACGCCCCCGGAGGTGCCTTCCT
CTTTGCGCAGGAACGATTTCCGTTCATTACCCTTCGCAGGGGAGGGGTAC
CCGCTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1084613..1085218+

>mRNA_P-fluviatile_contig12.1393.1 ID=mRNA_P-fluviatile_contig12.1393.1|Name=mRNA_P-fluviatile_contig12.1393.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1212bp|location=Sequence derived from alignment at P-fluviatile_contig12:1084613..1085218+ (Porterinema fluviatile SAG_2381)
AAAATCGTGCCGGTGTCGACACTCTCGTCATCGCTGAGCTGCTGCTGCTC
TTCGCGCATCCGCGATTCCCTCATCATGTCGGCGAAGGCGGCGTCCGCCT
GGCCTTCTGGCTCCGCATACCCAGCTGCCGCTCCTGCCGCTGCTAAGGGA
TCGGTGGCGGCGGCGCTTACGCCCTGCCTCCCGAAATCTTCCTCATCCTT
GTCCTCTACTTGCCCCCAATCCGCTTCGTCGCCAACGTCCCTCTCCTCCC
AGTCCTCTTCCTCCTCTTCATCATACTCCGCGTCTTCCTTCTGCCCCAAT
TTCCCCTCCAAGTGCGCGTGCCGTTGCTTCTTCCTGTCGAGGTCCTGCTT
CGCCAGAAACCTTACCTCTTCCATCATCTCCTCCAGATTGTCCGGGAACA
CCAGCCCACCGCCGCCTTCTCCGGCCTTCAGATTGCCTTCTCCCTCCTCC
TCCTCCTCCTCCCCCTCCTTCAACATGCGGCGTGCCTTGCCCCCCTCCAA
GAGATCAAACATAGTCACCTTTTTGAGAACGCCCCCGGAGGTGCCTTCCT
CTTTGCGCAGGAACGATTTCCGTTCATTACCCTTCGCAGGGGAGGGGTAC
CCGCTGAAAATCGTGCCGGTGTCGACACTCTCGTCATCGCTGAGCTGCTG
CTGCTCTTCGCGCATCCGCGATTCCCTCATCATGTCGGCGAAGGCGGCGT
CCGCCTGGCCTTCTGGCTCCGCATACCCAGCTGCCGCTCCTGCCGCTGCT
AAGGGATCGGTGGCGGCGGCGCTTACGCCCTGCCTCCCGAAATCTTCCTC
ATCCTTGTCCTCTACTTGCCCCCAATCCGCTTCGTCGCCAACGTCCCTCT
CCTCCCAGTCCTCTTCCTCCTCTTCATCATACTCCGCGTCTTCCTTCTGC
CCCAATTTCCCCTCCAAGTGCGCGTGCCGTTGCTTCTTCCTGTCGAGGTC
CTGCTTCGCCAGAAACCTTACCTCTTCCATCATCTCCTCCAGATTGTCCG
GGAACACCAGCCCACCGCCGCCTTCTCCGGCCTTCAGATTGCCTTCTCCC
TCCTCCTCCTCCTCCTCCCCCTCCTTCAACATGCGGCGTGCCTTGCCCCC
CTCCAAGAGATCAAACATAGTCACCTTTTTGAGAACGCCCCCGGAGGTGC
CTTCCTCTTTGCGCAGGAACGATTTCCGTTCATTACCCTTCGCAGGGGAG
GGGTACCCGCTG
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