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Homology
BLAST of mRNA_P-fluviatile_contig12.1392.1 vs. uniprot
Match: A0A6H5L4T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T9_9PHAE) HSP 1 Score: 357 bits (917), Expect = 1.370e-107 Identity = 187/252 (74.21%), Postives = 211/252 (83.73%), Query Frame = 1
Query: 1 YEDWTPLMHEGLKERTEALMGVARLLEVDAMAAARAADSEKDVGVVGVQGEEEDGGDAVAVAAAEAGPAVQRTMRARLKILTESRKCKQAIKFIDEEYPKEGAKLDVEAALQVVEMYINTRGVGVAEAFEKKCREEHGIPPNRRMLAAILNARARRAVAWGHEIPHVTRVLDTMQRHKIKPHENELRFVRQLVDRGKFEHSWLPADPDANIKRLRREVKKSKPVRKSYFKVVSKIKNAKFMQGTGRGKSRIE 756
YEDWTPLMH+GLKERTEALMGV +LLE D M AARAAD+EK V G G AGPAV+R +R+RLK LTESR+CK+AIKF+DEEYPKEGAK+D EAALQVVEMY+NTRGVG+AEAF ++ EE+G+ PNRR+LAAILNARARRAVAW HEIPHV RVLDTMQ+ +IKPHENELRFVRQLVDRGKFEHSWLP DP+ N+KR++ E KKS+ VRKSYFKVVSKI NAKFMQGTGRGKSRIE
Sbjct: 1044 YEDWTPLMHQGLKERTEALMGVVQLLETDGMVAARAADAEKGFRVGGEGG---------------AGPAVRRMLRSRLKTLTESRRCKEAIKFVDEEYPKEGAKVDAEAALQVVEMYVNTRGVGLAEAFVQRWTEENGVKPNRRILAAILNARARRAVAWRHEIPHVRRVLDTMQQLRIKPHENELRFVRQLVDRGKFEHSWLPVDPNTNLKRMKVERKKSRAVRKSYFKVVSKITNAKFMQGTGRGKSRIE 1280
BLAST of mRNA_P-fluviatile_contig12.1392.1 vs. uniprot
Match: D8LDL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL3_ECTSI) HSP 1 Score: 177 bits (448), Expect = 6.630e-44 Identity = 95/144 (65.97%), Postives = 111/144 (77.08%), Query Frame = 1
Query: 1 YEDWTPLMHEGLKERTEALMGVARLLEVDAMAAARAADSEKDVGVVGVQGEEEDGGDAVAVAAAEAGPAVQRTMRARLKILTESRKCKQAIKFIDEEYPKEGAKLDVEAALQVVEMYINTRGVGVAEAFEKKCREEHGIPPNRR 432
YEDWTPLMH+GLKERTEALMGV +LLE D MAAARAAD+EK V G G AGPAV+R +R+RLK LTESR+CK+AIKF+DEEYPKEGAK+D E LQVVEMY+NTRGVG+AEAF ++ EE+G+ PNRR
Sbjct: 957 YEDWTPLMHQGLKERTEALMGVVQLLEADGMAAARAADAEKGFRVGGEGG---------------AGPAVRRMLRSRLKTLTESRRCKEAIKFVDEEYPKEGAKVDAEGVLQVVEMYVNTRGVGLAEAFVQRWTEENGVKPNRR 1085
BLAST of mRNA_P-fluviatile_contig12.1392.1 vs. uniprot
Match: D8LDL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL4_ECTSI) HSP 1 Score: 135 bits (340), Expect = 4.720e-35 Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 1
Query: 520 MQRHKIKPHENELRFVRQLVDRGKFEHSWLPADPDANIKRLRREVKKSKPVRKSYFKVVSKIKNAKFMQGTGRGKSRIE 756
MQ+ +IKPHENELRFVRQLVDRGKFEHSWLP DP+AN+KR++ E+KKS+ VRKSY+KVVSKI NAKFMQGTGRGKSRIE
Sbjct: 1 MQQLRIKPHENELRFVRQLVDRGKFEHSWLPVDPNANLKRMKVEMKKSRAVRKSYYKVVSKITNAKFMQGTGRGKSRIE 79
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 161.8 |
| Seed ortholog evalue | 4.2e-37 |
| Seed eggNOG ortholog | 2880.D8LDL3 |
| KEGG ko | ko:K08737,ko:K17710 |
| KEGG Pathway | ko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210 |
| KEGG Module | M00295 |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03016,ko03029,ko03400 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Pentatricopeptide repeat |
| Ec32 ortholog | Ec-15_000140.1 |
| Exons | 4 |
| Model size | 1532 |
| Cds size | 738 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815503.2668977-UTR-P-fluviatile_contig12:1080278..1081051 | 1622815503.2668977-UTR-P-fluviatile_contig12:1080278..1081051 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig12 1080279..1081051 - |
| 1693562068.488138-UTR-P-fluviatile_contig12:1080278..1081051 | 1693562068.488138-UTR-P-fluviatile_contig12:1080278..1081051 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig12 1080279..1081051 - |
| 1622815503.3234036-UTR-P-fluviatile_contig12:1084404..1084425 | 1622815503.3234036-UTR-P-fluviatile_contig12:1084404..1084425 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig12 1084405..1084425 - |
| 1693562068.858941-UTR-P-fluviatile_contig12:1084404..1084425 | 1693562068.858941-UTR-P-fluviatile_contig12:1084404..1084425 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig12 1084405..1084425 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815503.2786908-CDS-P-fluviatile_contig12:1081051..1081171 | 1622815503.2786908-CDS-P-fluviatile_contig12:1081051..1081171 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1081052..1081171 - |
| 1693562068.8124537-CDS-P-fluviatile_contig12:1081051..1081171 | 1693562068.8124537-CDS-P-fluviatile_contig12:1081051..1081171 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1081052..1081171 - |
| 1622815503.2890391-CDS-P-fluviatile_contig12:1081611..1081819 | 1622815503.2890391-CDS-P-fluviatile_contig12:1081611..1081819 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1081612..1081819 - |
| 1693562068.8292933-CDS-P-fluviatile_contig12:1081611..1081819 | 1693562068.8292933-CDS-P-fluviatile_contig12:1081611..1081819 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1081612..1081819 - |
| 1622815503.298682-CDS-P-fluviatile_contig12:1082160..1082288 | 1622815503.298682-CDS-P-fluviatile_contig12:1082160..1082288 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1082161..1082288 - |
| 1693562068.8395464-CDS-P-fluviatile_contig12:1082160..1082288 | 1693562068.8395464-CDS-P-fluviatile_contig12:1082160..1082288 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1082161..1082288 - |
| 1622815503.3099608-CDS-P-fluviatile_contig12:1084122..1084404 | 1622815503.3099608-CDS-P-fluviatile_contig12:1084122..1084404 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1084123..1084404 - |
| 1693562068.8494165-CDS-P-fluviatile_contig12:1084122..1084404 | 1693562068.8494165-CDS-P-fluviatile_contig12:1084122..1084404 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig12 1084123..1084404 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1392.1 >prot_P-fluviatile_contig12.1392.1 ID=prot_P-fluviatile_contig12.1392.1|Name=mRNA_P-fluviatile_contig12.1392.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=246bp
MHEGLKERTEALMGVARLLEVDAMAAARAADSEKDVGVVGVQGEEEDGGD AVAVAAAEAGPAVQRTMRARLKILTESRKCKQAIKFIDEEYPKEGAKLDV EAALQVVEMYINTRGVGVAEAFEKKCREEHGIPPNRRMLAAILNARARRA VAWGHEIPHVTRVLDTMQRHKIKPHENELRFVRQLVDRGKFEHSWLPADP DANIKRLRREVKKSKPVRKSYFKVVSKIKNAKFMQGTGRGKSRIE* back to topmRNA from alignment at P-fluviatile_contig12:1080279..1084425- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig12.1392.1 ID=mRNA_P-fluviatile_contig12.1392.1|Name=mRNA_P-fluviatile_contig12.1392.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4147bp|location=Sequence derived from alignment at P-fluviatile_contig12:1080279..1084425- (Porterinema fluviatile SAG_2381) TACGAAGATTGGACCCCCCTGATGCACGAGGGGCTCAAAGAGCGGACGGA
GGCACTCATGGGAGTGGCACGACTGTTGGAGGTGGATGCCATGGCTGCCG
CGCGAGCGGCGGACTCGGAAAAGGACGTAGGCGTCGTAGGAGTGCAAGGG
GAGGAGGAGGACGGGGGGGATGCGGTGGCGGTGGCGGCGGCGGAGGCGGG
CCCGGCGGTGCAGAGGACCATGCGGGCGAGGCTGAAGATCCTCACGGAGT
CCCGCAAGTGCAAGCAGGCCATCAAGTTTATCGATGAGGAATACCCCAAG
GAGGTGAGTGACGGGGTTGCGTGGGCTTACCGGCGGTCACCCCGTTCCTC
TGCTTTCCTAAGCTTGCCGTCGGGCCTGCCTGCTTGCTGGTGTACGGCGC
GCGAGCGGAGTCAATTCCGAGAAGCGTTTTATGAGAGATCACCTCAAAGG
CTTCGCACTATGGCCTCTCGTCCGGAAAGTACGAACGGGCGTTTGTCTGG
GCACAGAGGGGGGTATTTTTTTCACGACGCCAGCATGAAATGCACTTGTT
CTGCAGGCCGTAGAACACATGTACCGTAACGTTCTTTGACGTCTCCCCGG
GGTGAGGATTATTATTTCTTTTTCTGGACTTCATCCCCGAGGGGTAAATT
GAGAAAGACGGGGTGATTTTTCTTAAAGGCTAATACCCCGGGTACCCTGA
GGGGAGGAGAACAATAATACGCTGCGCACACATAGACACACATTCGTCCT
ATAGTGACAATGGACCAGGTTTGCGAGCAACAGTTCAGGAGGAAGACAGA
GGACGGTAGCACGTGGGGATGTTTAAACCGTTCGGAGAGTGATGCCGCCC
CACCTCTCCAAGAAGAGAGGTCCGCCGAAGAACGAGTACCCGCCAGCGCC
GCTCGCGCTGCGAAGCATGGGCAGTCGCACAGGGCGTATGTCCTACGAAA
GCCGCCAACAGCTCGAAGATGTGGCGGTAGCCGAATGAAGTGTGCTGGCT
AGACCGAAGTGGGGCGGCGAGGGGGGGCAAAGATGGTCGGCATCGACATC
AAGCTTATCCGGGACTAGGCAAGCCATGAAGGACAGCTCATCAAGTTCAC
AGAGAAGCCTGGTGCGGGTGGGAAGCGCACGCTGCACGAGGGACGCGAGC
GTGCGACGAAGGACGTCGAGGAGGCCGTTGTGGACGAGATAAACAACCGA
AGGAAGCACGGCGTAGCGGTTGCAACTGACGTCGTCACGGCGAAGGTCCT
GGACAAGATGCCAACTCTCCAGGATGGTTTGCCATCCGCAGATGACCACG
ACGCGGTCGATAAATTTTGGAAGCGTTTGTTTTTTACTTTCGTTTTTTTG
TTTTATATCACAGCACCAACACCTCAAACAACATCCATTGGCAACTCGCC
GCGACTATCGCTTCGTCAGCGTCTTTACCACGAATAATCGCAATCGAAGG
CATTCCATCTCAACGATGGGAATGATCTTTGCCCTCGACTTTAAATGGCG
CAAACAATTTAATAAATGGTTATGCCGGGGAGTTGTCGAGCGAAATTTTC
AACCCCGGGGGGAAATCAAGAACGGGGGGAAGTTTTTTTTTTTGTCGAAC
CCCCCCCCCCCCGGAAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGG
TCTAACCGCTAAGACATGCAAAACATAAGATTACGCCCCCCCCCCTGGAG
GACAACAAGGTCATGACAGTTTTTTTCGGGGGGGGGGGACGACAACGAAG
ATTACGGTGCCCTGAATAACCCTGGTTGGAACACGCCTTGCACCGAAGGG
GCGTGCTTGTGGTGTCAGACATCCTGCCCGCTTCATTGTCTTTGGATGAC
ATCAAAAGGGATGAAGGGCTCTGTACGCGTCCGAGTTCAATCCGGTTTCC
AAGCTAGAGGACGATATGTTCCAACCCATGGCTCAAGTCTCTCGTGCGAA
ATCTTTGGCGCTGAAAATGCTACCTTTATCAAGTCCAGCCACCCGCACGC
TGCATGGCCCCGGCTGGAACGCCAGCAGTGCCGCCGAAGGTTGCAGGCGG
CCAGAATACATGGTACGAAAGCACGATGATAACTAAAACAACTGCCAAAT
GCCCCCGTGTCGTGGCCGTCGGGCGTTGGCTTGTCAGGGAGCGAAGTTGG
ACGTGGAGGCGGCCCTGCAGGTGGTCGAGATGTACATCAACACTCGCGGC
GTTGGTGTCGCCGAGGCGTTCGAGAAGAAGTGCAGGGAAGAGCACGGCAT
CCCGCCGAATCGTCGGTACGTTTCACAACAATGTTAGCGCAAAATCTGAA
TGAGTTCGTGATGGATCCAGCAGTCTATGTCTGTGTTTTCGTCTTGGACG
CAATTCACAGGGCGCGCGAAGCAACATGGTTTTCCCCGTGAGCAATCCAA
AAGTATATCTCGATGATTCCGCCGCTCGAGGTGTTGCCCATGAAGGGGTA
AACATTCATGAGTCTTTCGTATGGCGGGCGAGCTCCGCGCGTCGTGTATT
CCAAATCTTCGGCCGTTTTTCTCGTGTTGTTGACCGATTCACGTCCGTTT
TCGCTGCCATTTTCGGTTGTGCTCACGCACGCGTCTTCACTGGCTTGGGG
GCGCAGAATGCTGGCCGCCATCCTGAACGCACGGGCGCGACGGGCCGTAG
CGTGGGGCCACGAGATCCCGCACGTGACGAGGGTGCTAGACACGATGCAG
CGGCACAAGATCAAGCCTCACGAGAACGAGCTGCGTTTCGTGCGGCAGCT
GGTGGACAGAGGAAAGTTCGAGCACTCGTGGCTCCCGGCCGACCCCGACG
CGAACATCAAGAGGGTGAGCTTGGTGGTCGGGAGGCGCATGCATGTTAAG
AGTGCGTGCGTACGCGGCAAGAGGGCTGGCTTTGCTTGAGCAGGTCGACG
GGTCCCCACGTCCTGTCCATTTTCTTCCCGTGGAATTCGTACGTCGTGGC
GCCTTCCGTCAACTCCCTCTGATGCCGGCGGAGCGTCTTTTTGCGCGTAC
TCCTTTGTGAGGCTTGACGCGAAAACCGTGACTTTTGCAAGACGCTGCGT
TCGATGTGTTGGTCGCCCATGACCAACCTTGGTTTTGCGAGAGAATCGGA
GTACCTTCTTTTCACAATGTTCGTGACAACAACGAAGGGAGTTGAGACGA
CGGAAATTGGATGTGTGCGTTGTCGTTTCGCTCGTGATTTTTGGATCCAA
ATTTCCTTTTCCCGGTTGCCTTTCCCTCGCCTCTATGGTCCTCGTGTTTC
GCAGCTGAGGCGCGAGGTCAAGAAGTCAAAGCCCGTAAGGAAGTCGTACT
TCAAGGTCGTCAGCAAGATCAAGAATGCCAAGTTCATGCAAGGGACGGGG
CGCGGAAAGAGCAGAATTGAGTAAAGCGATGCCTTGGTATCCCGTTAGAG
GTTTCGAGTAAAAATGAGAGGGGTGTAACTGGCTGACACGATCAAAAACG
CTTGATGGAGTCGGGTGTGAGATGCAAGGGATAGCCCTTAGTCTACCCAC
CAACGAAATCGTGTGCTCGTTTTTTGGCACGAATAGAAGCGACGCCGCTT
GAAAGCTTGTGCTCTCGTGCGCTTCCGTGTTTCGTGTTGTCCTGAATCCC
TGTAGAGATTCTAATTGTCGCGGCTCTCTTGTTGTCATTATGCGCGGCTG
AAGCTTTGATCTCTCCAAAGCCACGGCCGTGACTGACGCCGTTGGTGCCT
CCGAACAAACCTTTCGCAATTTTCGCACGGTGCCTGGCCTATTGAATCGC
TGAGCTCCTTACGCGGCCAACACCGGCACCATTTCTGGGGTCCTCTATGA
ACGAAGTTCCTTCCGGCGACATTTGACTAGATTGTCGGATTATTTCTGAG
TACGTCGGCTACTCTGCCACTCGTCCGGCGCAAAGCCTCATGCCATCTTC
GAGGCCAGCTTCGATCTGAATGAGGCGTGTATGTTTGCCCCGCTCCGTCA
CGCACCGGACGCACAGTCGAATATCGTTTCGTCCAGGACGAGCTTGGATC
GTGCGATTTTCCATTTCAGCGCATTGCATTAACCCTTCTTACCATTTGCT
TGCAGCCAGCGGCTTCGAGTGACTCAAATTTTGAGGCTCAAAACCCCCAA
GTTGCCCGAATTCTTGATGACAGGTTGAGCAAGGAACAAGGCCGATG back to topCoding sequence (CDS) from alignment at P-fluviatile_contig12:1080279..1084425- >mRNA_P-fluviatile_contig12.1392.1 ID=mRNA_P-fluviatile_contig12.1392.1|Name=mRNA_P-fluviatile_contig12.1392.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1476bp|location=Sequence derived from alignment at P-fluviatile_contig12:1080279..1084425- (Porterinema fluviatile SAG_2381) ATGCACGAGGGGCTCAAAGAGCGGACGGAGGCACTCATGGGAGTGGCACG ACTGTTGGAGGTGGATGCCATGGCTGCCGCGCGAGCGGCGGACTCGGAAA AGGACGTAGGCGTCGTAGGAGTGCAAGGGGAGGAGGAGGACGGGGGGGAT GCGGTGGCGGTGGCGGCGGCGGAGGCGGGCCCGGCGGTGCAGAGGACCAT GCGGGCGAGGCTGAAGATCCTCACGGAGTCCCGCAAGTGCAAGCAGGCCA TCAAGTTTATCGATGAGGAATACCCCAAGGAGATGCACGAGGGGCTCAAA GAGCGGACGGAGGCACTCATGGGAGTGGCACGACTGTTGGAGGTGGATGC CATGGCTGCCGCGCGAGCGGCGGACTCGGAAAAGGACGTAGGCGTCGTAG GAGTGCAAGGGGAGGAGGAGGACGGGGGGGATGCGGTGGCGGTGGCGGCG GCGGAGGCGGGCCCGGCGGTGCAGAGGACCATGCGGGCGAGGCTGAAGAT CCTCACGGAGTCCCGCAAGTGCAAGCAGGCCATCAAGTTTATCGATGAGG AATACCCCAAGGAGGGAGCGAAGTTGGACGTGGAGGCGGCCCTGCAGGTG GTCGAGATGTACATCAACACTCGCGGCGTTGGTGTCGCCGAGGCGTTCGA GAAGAAGTGCAGGGAAGAGCACGGCATCCCGCCGAATCGTCGGGAGCGAA GTTGGACGTGGAGGCGGCCCTGCAGGTGGTCGAGATGTACATCAACACTC GCGGCGTTGGTGTCGCCGAGGCGTTCGAGAAGAAGTGCAGGGAAGAGCAC GGCATCCCGCCGAATCGTCGAATGCTGGCCGCCATCCTGAACGCACGGGC GCGACGGGCCGTAGCGTGGGGCCACGAGATCCCGCACGTGACGAGGGTGC TAGACACGATGCAGCGGCACAAGATCAAGCCTCACGAGAACGAGCTGCGT TTCGTGCGGCAGCTGGTGGACAGAGGAAAGTTCGAGCACTCGTGGCTCCC GGCCGACCCCGACGCGAACATCAAGAGGAATGCTGGCCGCCATCCTGAAC GCACGGGCGCGACGGGCCGTAGCGTGGGGCCACGAGATCCCGCACGTGAC GAGGGTGCTAGACACGATGCAGCGGCACAAGATCAAGCCTCACGAGAACG AGCTGCGTTTCGTGCGGCAGCTGGTGGACAGAGGAAAGTTCGAGCACTCG TGGCTCCCGGCCGACCCCGACGCGAACATCAAGAGGCTGAGGCGCGAGGT CAAGAAGTCAAAGCCCGTAAGGAAGTCGTACTTCAAGGTCGTCAGCAAGA TCAAGAATGCCAAGTTCATGCAAGGGACGGGGCGCGGAAAGAGCAGAATT GAGTAACTGAGGCGCGAGGTCAAGAAGTCAAAGCCCGTAAGGAAGTCGTA CTTCAAGGTCGTCAGCAAGATCAAGAATGCCAAGTTCATGCAAGGGACGG GGCGCGGAAAGAGCAGAATTGAGTAA back to top
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