mRNA_P-fluviatile_contig12.1385.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1385.1
Unique NamemRNA_P-fluviatile_contig12.1385.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:999640..1000333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size696
Cds size471
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.247346-UTR-P-fluviatile_contig12:999639..9998621622815489.247346-UTR-P-fluviatile_contig12:999639..999862Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 999640..999862 +
1693562047.447123-UTR-P-fluviatile_contig12:999639..9998621693562047.447123-UTR-P-fluviatile_contig12:999639..999862Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 999640..999862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.2595713-CDS-P-fluviatile_contig12:999862..10003331622815489.2595713-CDS-P-fluviatile_contig12:999862..1000333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 999863..1000333 +
1693562047.4563944-CDS-P-fluviatile_contig12:999862..10003331693562047.4563944-CDS-P-fluviatile_contig12:999862..1000333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 999863..1000333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1385.1prot_P-fluviatile_contig12.1385.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 999863..1000333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1385.1

>prot_P-fluviatile_contig12.1385.1 ID=prot_P-fluviatile_contig12.1385.1|Name=mRNA_P-fluviatile_contig12.1385.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=157bp
MNFRPTPCCSGRLFLCENLSGRMQCGFSLPYTTYLRPSAEGKQKRPVVLN
QVFQLPEILRVATRGAGECGTDFRVVCTQDRTPLQRQPQSTKARCRRSSP
PQTRTKNHMQNQESRPTKSVRPFRQPLHPHLHIAAGGGVVYPHETLPLTS
VPDSFIA
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mRNA from alignment at P-fluviatile_contig12:999640..1000333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1385.1 ID=mRNA_P-fluviatile_contig12.1385.1|Name=mRNA_P-fluviatile_contig12.1385.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=694bp|location=Sequence derived from alignment at P-fluviatile_contig12:999640..1000333+ (Porterinema fluviatile SAG_2381)
GGATGGGAAGCTAGGCCAAAACGGGTTTTGACGAAAATCTACGATCACTG
TCCCCGCTGACATTCAACGCAAGATTCAACAGGAAATGCTGAACGGCGGG
CCCAAAAGTGTCAAACTATGCTGTAGAGACAACGACGATCGCGACCTTAA
GGGCAAAACATTTCTACTGTTGCATGCTGCATCCTTCAGGCGCCGCTGAC
AATGTGCAGGCGAAAACGTCGCAATGAACTTTCGGCCCACACCTTGTTGC
TCTGGTCGTCTTTTTCTCTGTGAGAACCTTTCTGGTCGCATGCAGTGTGG
ATTCTCACTGCCATACACCACTTATCTGCGCCCATCAGCAGAGGGGAAGC
AGAAACGGCCTGTCGTTTTGAACCAGGTGTTTCAACTCCCTGAAATACTG
CGCGTGGCAACCAGAGGAGCAGGAGAATGTGGCACAGACTTTCGTGTAGT
CTGCACGCAGGACAGGACACCTTTACAAAGACAACCGCAGAGCACGAAAG
CTCGCTGCCGCCGTAGCAGCCCACCACAGACGAGAACGAAAAATCACATG
CAGAACCAGGAAAGTCGACCAACCAAGTCCGTCCGCCCATTTCGTCAGCC
TCTTCATCCACACCTGCATATCGCGGCCGGTGGTGGCGTTGTGTATCCGC
ACGAAACACTCCCCTTGACCTCTGTTCCCGACTCCTTTATTGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:999640..1000333+

>mRNA_P-fluviatile_contig12.1385.1 ID=mRNA_P-fluviatile_contig12.1385.1|Name=mRNA_P-fluviatile_contig12.1385.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=942bp|location=Sequence derived from alignment at P-fluviatile_contig12:999640..1000333+ (Porterinema fluviatile SAG_2381)
ATGAACTTTCGGCCCACACCTTGTTGCTCTGGTCGTCTTTTTCTCTGTGA
GAACCTTTCTGGTCGCATGCAGTGTGGATTCTCACTGCCATACACCACTT
ATCTGCGCCCATCAGCAGAGGGGAAGCAGAAACGGCCTGTCGTTTTGAAC
CAGGTGTTTCAACTCCCTGAAATACTGCGCGTGGCAACCAGAGGAGCAGG
AGAATGTGGCACAGACTTTCGTGTAGTCTGCACGCAGGACAGGACACCTT
TACAAAGACAACCGCAGAGCACGAAAGCTCGCTGCCGCCGTAGCAGCCCA
CCACAGACGAGAACGAAAAATCACATGCAGAACCAGGAAAGTCGACCAAC
CAAGTCCGTCCGCCCATTTCGTCAGCCTCTTCATCCACACCTGCATATCG
CGGCCGGTGGTGGCGTTGTGTATCCGCACGAAACACTCCCCTTGACCTCT
GTTCCCGACTCCTTTATTGCCATGAACTTTCGGCCCACACCTTGTTGCTC
TGGTCGTCTTTTTCTCTGTGAGAACCTTTCTGGTCGCATGCAGTGTGGAT
TCTCACTGCCATACACCACTTATCTGCGCCCATCAGCAGAGGGGAAGCAG
AAACGGCCTGTCGTTTTGAACCAGGTGTTTCAACTCCCTGAAATACTGCG
CGTGGCAACCAGAGGAGCAGGAGAATGTGGCACAGACTTTCGTGTAGTCT
GCACGCAGGACAGGACACCTTTACAAAGACAACCGCAGAGCACGAAAGCT
CGCTGCCGCCGTAGCAGCCCACCACAGACGAGAACGAAAAATCACATGCA
GAACCAGGAAAGTCGACCAACCAAGTCCGTCCGCCCATTTCGTCAGCCTC
TTCATCCACACCTGCATATCGCGGCCGGTGGTGGCGTTGTGTATCCGCAC
GAAACACTCCCCTTGACCTCTGTTCCCGACTCCTTTATTGCC
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