mRNA_P-fluviatile_contig12.1384.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1384.1 vs. uniprot
Match: D8LDJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ8_ECTSI) HSP 1 Score: 843 bits (2179), Expect = 2.670e-285 Identity = 504/796 (63.32%), Postives = 555/796 (69.72%), Query Frame = 1
Query: 124 VLRRISSEDKAKLTAYSIENDSASWLKKKLFKTEVEWPRELYLNVIGCKALVPQSSVAANDRDEPLTATASVTTDGDNGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGSNPAAESPETT--------------APEAASEVDSVGGEFENEKAVGKENXXXXXXXXXXXXXXKGMRNGT*GGGNKGVGNRGQGECFVRIHNATTGRDMQTETVAGVTSPAFHETFVVPCQGPRDAIVLEVFCGEGENAKAVAIGEAALPLDARVIGVSHPVLLSVKDKQGRSRGFLRVEVFWMDEAKPRKEVGEFYYKVVHPSGVSLRHAPSTGSDRTVHVLHYGEVFVACERQWLIGAESSDGDGNGDGSPVFVKVMAAKDQWNRSGWCFETLPREAGKGDIVPVLERTSPPLREWGRYFYRVCNPKGASLHRKADPRSKLREEVLPAGRVLEAGYKWTPAGSPVTFVTMVKREGFVIQKCGEKVVRNAKGEPEFEEIECPQGIMVSSVGVPEPPTVPTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSPWQESSKHLDKKRAAEAAAAAASVRRLYRVREESGVEATTTPDIAAPAADLIKAGAAFYGKAEVVKHYEGIGEVAFVMRETDKLWVRANRPGLALMLDVFTNVVEFGAFTYRVSHENGVVVRTAPGLDAPPVKPRRILPVSKLISVCERLTRAEDILALSRPPTFLRLAGNDGWVFDRRGHTLVCEDVTVKSRIATANAITSEAARLSLGG 2469
++RRIS +DKAKL A+SIENDSA WLKKKLFK EV WPRELYLNV+GCKALVPQS+V PLTATASVTTDG+NG+A +P T + +S GG ++A + + GG K V +GECFVRI NATTGRD+QTETV+G + FHETFVVPCQGPRDA+VLEVF GEGE KAVAIG+AALPLDARV+GVSHPVLLSVKDKQGR+RGFLRVE FW+DEAKPRKEVGEFYYKVVHP GV LR+ P TGSDR+VHVL GEVFVACERQW +G E DGD SPVFVK+M +KD+WNRSGWCFETL G VPVLER SPPLRE GRYF+RVCNP+GA LHRK D +S+LR+E+LP G+VLEAG KWTPAGSPVTFVT+V GFVIQ+ GEK V NA GE FEE+ECP+ ++SSVGVPE P S XXXXXXXXXXXXXXXX XXXXXXXXXXXX SVRRLYRVREE GVEAT TPDI APAAD I+ G AFYGKAEVVKHYEGIG+VAFVMRETD LWVRANRPG+ALMLDVFTNV EFGA+TYRV HENGVVVRTAPGLDAPPVKPRRILPV+KL++V ERLTRAEDI+ LSRPP FLRLAGNDGWVFDRRGHTLVCEDVTVKSRIATANAITSEAARLSLGG
Sbjct: 1 MVRRISMDDKAKLKAFSIENDSAGWLKKKLFKKEVTWPRELYLNVLGCKALVPQSAVGEGG---PLTATASVTTDGENGDAAGTAAAGVILAGVGGDIDARVNPERATPPPGGALGAAGGVVVATPGTADGTVXXXXXXXXXXXXXXGLDTESEGGIESGDEATSSVGDGAEPVEDVNELMSA-LSSNMEGGEVKEV----KGECFVRIRNATTGRDLQTETVSGGANIGFHETFVVPCQGPRDAVVLEVFFGEGE--KAVAIGDAALPLDARVVGVSHPVLLSVKDKQGRNRGFLRVETFWLDEAKPRKEVGEFYYKVVHPCGVHLRNQPCTGSDRSVHVLGCGEVFVACERQWHVGGEPVDGDC----SPVFVKLMTSKDRWNRSGWCFETLCNSGGVS--VPVLERASPPLRESGRYFFRVCNPEGARLHRKGDTKSRLRKELLPEGQVLEAGNKWTPAGSPVTFVTVVNGRGFVIQRRGEKTVMNATGEAAFEEVECPKSTVLSSVGVPEHTAEPPTSSSTVEAADATSADGTAATASKGXXXXXXXXXXXXXXXXDSKVDXXXXXXXXXXXX------------------------------SVRRLYRVREEVGVEATKTPDIVAPAADRIEVGVAFYGKAEVVKHYEGIGDVAFVMRETDGLWVRANRPGVALMLDVFTNVHEFGAYTYRVCHENGVVVRTAPGLDAPPVKPRRILPVTKLVNVSERLTRAEDIMNLSRPPIFLRLAGNDGWVFDRRGHTLVCEDVTVKSRIATANAITSEAARLSLGG 750
BLAST of mRNA_P-fluviatile_contig12.1384.1 vs. uniprot
Match: A0A6H5LA98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA98_9PHAE) HSP 1 Score: 667 bits (1722), Expect = 2.430e-218 Identity = 406/762 (53.28%), Postives = 456/762 (59.84%), Query Frame = 1
Query: 145 EDKAKLTAYSIENDSASWLKKKLFKTEVEWPRELYLNVIGCKALVPQSSVAANDRDEPLTATASVTTDGDNGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGSNPAAESPETTAPEAASEV------------------------------DSVGGEFENEKAVGKENXXXXXXXXXXXXXXKGMRNGT*GGGNKGVGNRGQGECFVRIHNATTGRDMQ-----TETVAGVTSPAFHETFVVPCQGPRDAIVLEVFCGEGENAKAVAI-GEAA-------------LPLDARVIGVSHPVLLSVKDKQGRSRGFLRVEVFWMDEAKPRKEVGEFYYKVVHPSGVSLRHAPSTGSDRTVHVLHYGEVFVACERQWLIGAESSDGDGNGDGSPVFVKVMAAKDQWNRSGWCFETLPREAGKGDIVPVLERTSPPLREWGRYFYRVCNPKGASLHRKADPRSKLREEVLPAGRVLEAGYKWTPAGSPVTFVTMVKREGFVIQKCGEKV------------VRNAKGEPEFEEIECPQGIMVSSVGVPE----PPTVPTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSPWQESSKHLDKKRAAEAAAAAASVRRLYRVREESGVEATTTPDIAAPAADLIKAGAAFYGKAEVVKHYEGIGEVAFVMRETDKLWVRANRPGLALMLDVFTNVVEFGAFTYRVSHENGVVVRTAPGLDAPPVK 2235
+DKAKL A+SIENDSA WLKKKLFK EV WPRELYLNV+GCKALVPQS+V D PLTATASVTTDG+NG+ G A +PE P A EV DS GG ++A N G K V +G CFVR+ NATTGRD+Q TETV+G + FHETFVVPCQGPRDA+VLEVF GEGE A A+ + G+++ DARV+GVSHPVLLSVKDKQGR+RGFLRVE FW+DEAKPRKEVGEFYYKVVHP GV LR+ P TGSDR+VHVL GEVFVACERQW +G E DGD SPVFVK+M +KD+WNRSGWCFETL G G VPVLER SPPLRE GRYF+RV NP+GA LHRK D +S LR+E+LP G+VLEAG KWTPAGSPVTFVT+V GF+IQ+ GEKV V NA GE FEE+ECP+ +VSSVGVPE PPT + SP + +DK +A SVRRLYRVREE+GVEAT TPDI APAAD I+AG AFYGKAEVVKHYEGIG+VAFVMRETD LWVRANRPG+ALMLDVFTNV EFGA+TYRVSHENGVVVRTAPGLDAP VK
Sbjct: 2 DDKAKLKAFSIENDSAGWLKKKLFKKEVTWPRELYLNVLGCKALVPQSAVG---EDGPLTATASVTTDGENGDVAGTAAGAGVVLSGVG---------------------GDMDAKANPEPATPPPAGEVVVASPGTADGTVNRXXXXXXXXXXXXXXDTDSEGGMESGDEATSTLGDGAEPVEDVNELMSAVSSN-VEGAEVKDV----KGVCFVRVRNATTGRDLQRHVLKTETVSGGANIEFHETFVVPCQGPRDAVVLEVFFGEGEKAVAIGMRGQSSNDYGMHDXXXXXXXXXDARVVGVSHPVLLSVKDKQGRNRGFLRVETFWLDEAKPRKEVGEFYYKVVHPCGVHLRNQPCTGSDRSVHVLECGEVFVACERQWHVGGEPVDGDC----SPVFVKLMTSKDRWNRSGWCFETLCN--GGGVSVPVLERASPPLRESGRYFFRVRNPEGARLHRKGDTKSTLRKELLPEGQVLEAGNKWTPAGSPVTFVTVVNGRGFIIQRRGEKVDVARRMTETAKTVTNAAGEAAFEEVECPKSTIVSSVGVPEHTAEPPTFSSTVEGADATAADGIAATASTGDGRCRRSGSS----------------------------------SPSKTRDSKVDKVKAXXXXXXXXSVRRLYRVREEAGVEATKTPDIVAPAADCIEAGTAFYGKAEVVKHYEGIGDVAFVMRETDGLWVRANRPGVALMLDVFTNVHEFGAYTYRVSHENGVVVRTAPGLDAPAVK 694 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1384.1 >prot_P-fluviatile_contig12.1384.1 ID=prot_P-fluviatile_contig12.1384.1|Name=mRNA_P-fluviatile_contig12.1384.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=582bp MQTETVAGVTSPAFHETFVVPCQGPRDAIVLEVFCGEGENAKAVAIGEAAback to top mRNA from alignment at P-fluviatile_contig12:984454..1007987- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1384.1 ID=mRNA_P-fluviatile_contig12.1384.1|Name=mRNA_P-fluviatile_contig12.1384.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=23534bp|location=Sequence derived from alignment at P-fluviatile_contig12:984454..1007987- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:984454..1007987- >mRNA_P-fluviatile_contig12.1384.1 ID=mRNA_P-fluviatile_contig12.1384.1|Name=mRNA_P-fluviatile_contig12.1384.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3492bp|location=Sequence derived from alignment at P-fluviatile_contig12:984454..1007987- (Porterinema fluviatile SAG_2381)back to top |