mRNA_P-fluviatile_contig12.1367.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1367.1
Unique NamemRNA_P-fluviatile_contig12.1367.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.470e-22
Identity = 77/196 (39.29%), Postives = 101/196 (51.53%), Query Frame = 3
Query:  381 PGCSLTGSPLSYAKAHKRLSKRMRRLAE-AEQSLPEGTPGTMVTLQFTVGKSENDPCR--GTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLPSTKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLICHHYDRMSRRRQVLSVADFVAPTPEAAAMFAESLSS 959
            P  SL  S  +Y  A KRL + M +LA   E+SL EG   T+V+            CR  GTGM+S+PN+ G +KALQYVD RL+A  AE  GVD+R VYLAR A DI+ S + H ++              F R  +ILL   A++ S   +L P F  C  Y  M+   Q   VA F+AP    A   A+ + S
Sbjct:   28 PELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGE-STVVSF---------GACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGS-----------FIRESRILLNNLAVVHSTFQELDPAFTTCFRYGEMADPAQAARVAGFLAPNNRTAEKLADQMLS 202          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.660e-21
Identity = 77/196 (39.29%), Postives = 101/196 (51.53%), Query Frame = 3
Query:  381 PGCSLTGSPLSYAKAHKRLSKRMRRLAE-AEQSLPEGTPGTMVTLQFTVGKSENDPCR--GTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLPSTKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLICHHYDRMSRRRQVLSVADFVAPTPEAAAMFAESLSS 959
            P  SL  S  +Y  A KRL + M +LA   E+SL EG   T+V+            CR  GTGM+S+PN+ G +KALQYVD RL+A  AE  GVD+R VYLAR A DI+ S + H ++              F R  +ILL   A++ S   +L P F  C  Y  M+   Q   VA F+AP    A   A+ + S
Sbjct:  151 PELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGE-STVVSF---------GACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGS-----------FIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPNNHTAEKLADQILS 325          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.660e-20
Identity = 68/184 (36.96%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  381 PGCSLTGSPLSYAKAHKRLSKRMRRLAEAEQSLPEGTPGTMVTLQFTVGKSENDPCRGTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLPSTKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLICHHYDRMSRRRQVLSVADFVAPTPEAA 932
            P  +   +   Y +A + L + +  LA         T G     QF   +S++      GM+SFPN+ G DKALQYVD RLLA  AE  GVD+R VYLAR A  I+VS T+H  +              F R  + L+  AA+++S   +LGP F  C  Y+ MS   Q   VA F+AP  + A
Sbjct:  110 PSLATPSTKQDYERARRELRRELENLAAYPAEFM--TEGQAAIAQFVTCRSKS------GMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGT-----------FMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPDEDTA 274          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: A0A7S2GH68_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GH68_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 9.650e-15
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  552 GTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLPSTKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLICHHYDRMSRR 881
            G+GMLS+PN+GG DKAL   ++  LAM AE  GVDLR++ L RPA +++VSTT+HR F+++P              M +L   AA L + L  + P F +C  Y  M  R
Sbjct:   28 GSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKFNSKPT------------EMAVLGDNAAGLAAQLQLIDPRFFLCVDYSSMGNR 125          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: A0A7S2DFF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFF0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.600e-13
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 3
Query:  552 GTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRP 737
            G+GMLS+PN+GG DKAL   ++  LAM AE  GVDLR++ L RPA +++VSTT+HR F+++P
Sbjct:   28 GSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKFNSKP 89          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.040e-12
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  444 RMRRLAEAEQSLPEGTPGTMVTLQFTVGKSENDPCRGTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDF 725
            +MR LA+  Q+LP  TPGT+  +              TG +S+P   GP K  QYVDLRLLA AAEAEGVDLR++Y+ R A +++++ T HR F
Sbjct:   44 QMRDLAQRAQTLP--TPGTVQLI--------------TGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGF 121          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: A0A813BJ34_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BJ34_SYMMI)

HSP 1 Score: 62.8 bits (151), Expect = 7.020e-7
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  555 TGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLPSTKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLICHHY-DRMSRRRQVLS 896
            +GM+S+PN+GGPD+ +Q  D+  LA  AEA G+DLR+V L           TRH     R +L  +  + L     ++ +T A LL   L  L P ++ C  Y D M+R   +LS
Sbjct:  163 SGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLL-----------TRHPASLVRSELARSYEKDLTHAVRKVSMTMA-LLSEQLDLLDPAYVTCWTYEDPMARISHLLS 265          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: F0Y634_AURAN (PPM-type phosphatase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y634_AURAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.340e-6
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 3
Query:  417 AKAHKRLSKRMRRLAEAEQSLPEGTPGTMVTLQFTVGKSENDPCRGTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLPSTKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLIC 854
            A   KR   R++ L +A +    G P     L      ++       GM+S+PN+G PDK L + D++ LA  AEA G DLR++ + R A + +VST+ HR  +  P      PE+       +L   AA L S L  + P F++C
Sbjct:  101 AALRKRFFARLQHLRDAPRD--RGAP----VLYLLNVNADGATIPDAGMMSYPNFGPPDKVLHHPDMQTLATMAEAAGADLRVLVVLRGARETLVSTSVHRLGEFPP-----WPEEA-----AVLGNSAAALASELALVDPRFVVC 230          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: A0A1Q9EVB9_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EVB9_SYMMI)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-6
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  555 TGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLPSTKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLICHHY-DRMSRRRQVLS 896
            +GM+S+PN+GGPD+ +Q  D+  LA  AEA G+DLR+V L           TRH     R +L  +  + L     ++ +T A LL   L  L P ++ C  Y D M+R   +LS
Sbjct:  401 SGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLL-----------TRHPASLVRSELARSYEKDLTHAVRKVSMTMA-LLSEQLDLLDPAYVTCWTYEDPMARISHLLS 503          
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Match: A0A7S0BYH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYH2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.340e-5
Identity = 32/84 (38.10%), Postives = 43/84 (51.19%), Query Frame = 3
Query:  474 SLPEGTPGTMVTLQFTVGKSENDPCRGTGMLSFPNYGGPDKALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDF 725
            S+P  + G  + +    G          GM+S+PN+GG  KALQY DL  L  A    GV  + V L R A ++V ST  HR+F
Sbjct:   17 SIPPPSAGWFIPMNSIKGNKN-------GMMSYPNFGGATKALQYPDLDALYAACAEAGVVCKHVVLYRDAYEVVNSTMVHRNF 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KIA1_9PHAE4.470e-2239.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV4_ECTSI4.660e-2139.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV3_ECTSI4.660e-2036.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2GH68_9STRA9.650e-1542.73Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2DFF0_9STRA3.600e-1356.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G1E6_ECTSI3.040e-1246.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813BJ34_SYMMI7.020e-736.52Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
F0Y634_AURAN1.340e-632.88PPM-type phosphatase domain-containing protein n=1... [more]
A0A1Q9EVB9_SYMMI1.550e-636.52Uncharacterized protein n=2 Tax=Symbiodinium micro... [more]
A0A7S0BYH2_9STRA2.340e-538.10Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:698872..705703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog44056.XP_009035729.1
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons6
Model size2065
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1367.1prot_P-fluviatile_contig12.1367.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 699837..703023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.2973232-UTR-P-fluviatile_contig12:698871..6998361622815497.2973232-UTR-P-fluviatile_contig12:698871..699836Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 698872..699836 -
1693562061.8385427-UTR-P-fluviatile_contig12:698871..6998361693562061.8385427-UTR-P-fluviatile_contig12:698871..699836Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 698872..699836 -
1622815497.3621194-UTR-P-fluviatile_contig12:703023..7030471622815497.3621194-UTR-P-fluviatile_contig12:703023..703047Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 703024..703047 -
1693562061.8991048-UTR-P-fluviatile_contig12:703023..7030471693562061.8991048-UTR-P-fluviatile_contig12:703023..703047Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 703024..703047 -
1622815497.3751283-UTR-P-fluviatile_contig12:704662..7048201622815497.3751283-UTR-P-fluviatile_contig12:704662..704820Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 704663..704820 -
1693562061.90841-UTR-P-fluviatile_contig12:704662..7048201693562061.90841-UTR-P-fluviatile_contig12:704662..704820Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 704663..704820 -
1622815497.3883374-UTR-P-fluviatile_contig12:705439..7057031622815497.3883374-UTR-P-fluviatile_contig12:705439..705703Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 705440..705703 -
1693562061.917952-UTR-P-fluviatile_contig12:705439..7057031693562061.917952-UTR-P-fluviatile_contig12:705439..705703Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 705440..705703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.3104808-CDS-P-fluviatile_contig12:699836..7001511622815497.3104808-CDS-P-fluviatile_contig12:699836..700151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 699837..700151 -
1693562061.8504393-CDS-P-fluviatile_contig12:699836..7001511693562061.8504393-CDS-P-fluviatile_contig12:699836..700151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 699837..700151 -
1622815497.323394-CDS-P-fluviatile_contig12:700628..7006801622815497.323394-CDS-P-fluviatile_contig12:700628..700680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 700629..700680 -
1693562061.8595672-CDS-P-fluviatile_contig12:700628..7006801693562061.8595672-CDS-P-fluviatile_contig12:700628..700680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 700629..700680 -
1622815497.3354838-CDS-P-fluviatile_contig12:702596..7028261622815497.3354838-CDS-P-fluviatile_contig12:702596..702826Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 702597..702826 -
1693562061.870031-CDS-P-fluviatile_contig12:702596..7028261693562061.870031-CDS-P-fluviatile_contig12:702596..702826Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 702597..702826 -
1622815497.3493767-CDS-P-fluviatile_contig12:702966..7030231622815497.3493767-CDS-P-fluviatile_contig12:702966..703023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 702967..703023 -
1693562061.8884475-CDS-P-fluviatile_contig12:702966..7030231693562061.8884475-CDS-P-fluviatile_contig12:702966..703023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 702967..703023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1367.1

>prot_P-fluviatile_contig12.1367.1 ID=prot_P-fluviatile_contig12.1367.1|Name=mRNA_P-fluviatile_contig12.1367.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=218bp
MRRLAEAEQSLPEGTPGTMVTLQFTVGKSENDPCRGTGMLSFPNYGGPDK
ALQYVDLRLLAMAAEAEGVDLRLVYLARPAMDIVVSTTRHRDFDTRPDLP
STKPEQLFSRYMQILLTQAALLDSMLGQLGPVFLICHHYDRMSRRRQVLS
VADFVAPTPEAAAMFAESLSSTAAPTPKWSLRGADERRAKYEGEMVEIRR
LQFQLDALEAVHCSPVD*
back to top

mRNA from alignment at P-fluviatile_contig12:698872..705703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1367.1 ID=mRNA_P-fluviatile_contig12.1367.1|Name=mRNA_P-fluviatile_contig12.1367.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6832bp|location=Sequence derived from alignment at P-fluviatile_contig12:698872..705703- (Porterinema fluviatile SAG_2381)
CTCGTCTCTCGTCTCTCGTCTCCCCTTGCTCCCCCTCGAGCGCGTGCACA CACATGGGCATGTAGTGCCCAGCAGCATCGAGACATGCGACCCTCTACGG CTTTTATCCTGTTGGAGTCGCTTTTGTTCCTCATTCAGGCAGCCGTTGCG GAGGAAAACATCGTGCAGGACTTCCCCCCCGCTCGTGTCCGGCCACAACT GTCTCCAGATGACTATCGCTTGAACAAGACTGTTTCCAGCGACCGGATGA GGCTGGTTTTCGCGGTAGGCTTCAACTCTTGGTGCGATGCTTGTTTCTTT GACCCCACACTGAGATGTCGCGTTGGATACATGGATAGTGCGAGTGCGTC GACTAAACAGTGTAGACGTGTACAGAGTCCTGGGATGTACAAAGGCAGTG CCTTGCGGGTGCATGTCAACATTTTGTGGTACGCCCATGGCCCATGTGCG GATTAAAACTCTCCCCCCGCACAAATGGTTTTGCTCGACCACCATCATGG TTACCGCCCAAAAAATAATGAGAGAAAAAACAAAAATCTGGTTGCCTAGC GTATGCAGTGAGGAGCATGCTCTACAGCGCCGGCGCCAACCCGGCGCCAA CCCAACCCGTTGCCTCCCCATAGGGCATTACGTGTCCGAAGTTATGATCC GCGCAGACACGTGCTCTGGAAGGACAGATGATGGTGACAACTAAGAAATT GGGCAGACAGTTGTGGAAGATGGGATATTATTCATGGTATATAAAGTCAA GATATTACAAGGCGGGTCCAAGTGTTTGAATATTGTCTCCTTTGCACGGG TGTGGATCTTTGAACTGTCGGAAGGCAAACGATAAAATGACAAGCAGTAT TCGTCCCACGCTTCATGTATTGGCTTCCGCCAGGTCGGGCTGGAGGGGAC GGGCCACCACATGCTCACCAGGGCTTTCTCGGACATGTTCGAGCGGAACA ACCTCCCGTATTTAGACGCCTGCCCGCTGGCGAGGGACCTCTACCCCGGC CTGGTTGCTCGCTCACTGGCAGTCCCTTGTCCTACGCGAAGGTCAGTGCG CGTCGTGAATCCCCCTTTTTTTGTCGGACCGCCTAGCTCAAGATTGGTGG GGTTCCCTTCCCGTGAACTCTGCTTGCTACGGTATGCCGGCACGGTATGC CGGTACGAACGCCCGACACCTGCTGTTTTGGGTCTGCGATGCACCTTTCT GGGGCCCGGCTTTCTGCGTTGTGCCGGTACGGTATCCCGGTGCCCCGGCG AACGCCGGGTCCTAGCTGAAGCCGTCGACCAGTGTACATAATCGCGGTTG TATTCCAACGTTCGGTGGAAAAAGTCTTGTATTCAACCGTTCGGTGAAAA AATCTCTCGGAACCGATGCACGATCTCTGCATCCGAGTGCTGCCTGCGTC GCGACAAAACACCTTGCTGCAACGAAAAATTATAGATAACTTGTTACTGC TGGCCAGGCCTCAGCAGAGTTCGAGACCAACGACATGGCTCGGTCGATGG ATCCCGTCCCTGCACGCCAGCGTGCTCAGCGCTCAGTGCGTCGCTCAGGC GGAAGGCAGGCTGGCCACAAGCGTGGTCTCAACGGGTCTCGGCGGTTTTT ATTTTTATTTGTCACTCGTCATCACATCAAACCATCGCTCGCCGGGGCAT TCCTCGCCAGAGCTCTCATCCGCAGTCGCACAGAAAGTTCCTCTCCCCGA GGTCCCCATCCGCCCTGCTTCTGTGAGTGCCTATGCTTTTTGAAGCGAGA AGAGTTTAGCATGCTCGTCCCTCCGTGTACACACGTACTGAGATGCGCCC CTTTTTGAAAAGCCCATCGATCCGTGGTGAACATCTAAAGCAGGTCCGCT TTAGCGCGGTGTTGACGCGTGCTAGTTGTTAGTCATTGGGGTACGTCAGT CCTGAAGCCGCAGCCACTCTTCCGGCTGGTGTTTCCTCCTGCCGTCGCCT CGGTTCGTACCCCCGTTTTTCTTTTTTTAGTTCGTGTACCCCCCCCCCCA AAAGAAGCCAACATATATTCAGGTACGAATGAGTACCCCTCTAACATTTT GGTCTATCCCAGTCTTGAGCAGTGCATCCTCCGTGTTTGCTCACGAGCTC CATTTTTCCCCTCGCCATGGAACATCGTGTCATTACTATCCCCTCCCGCA ACCACCGTATCTTGGAGCACATGTCGTCATCTGCTGGTTGTTGGCTACCA AACACTCGATGCTGCAACATTATTCACTTGAAGCGTGCCCTTCCTTTCTG TCCCTAGCCAAAACACCAGACACTCAAAACATCTGGCGGTTTGGCTTGTA CTCCTTAGGCGATCGACTGAATTTTTAGGGAGGAGGGGAAGTTTAACACT TCAATTGGACTAGAATCAAAGTTAATTGATCTATAACGGAAAAATACTCG CATCAAGAGTATAACATACTGGCGTTTTTCGTGACTCAACGCGCGCTGGC CGTTGCGCCTTGCCGTCTGCCTGTCAGGCGCACAAGCTGTCGTCGTGACT TAGCTACCAAACACCAGTGCTGCACCATCAGACCCACATCTACAAGTGCC AGGCGGTACACTGCTCTGGCTGTCTCGCGGCTCCTTCGCCGAACACCAAA ACACGAGACATTCATAAACATCCAGCGGTGGACGTGCCTTGTCGTCTGCG TGCCAGGCTCATAAGAGGTTGTCCAAAAGGATGCGGAGGCTGGCGGAGGC GGAACAATCTCTGCCGGAAGGGACCCCGGGAACCATGGTGAGAGCACTGA ATCCGGCACCCTCCTCTCTCCTTCCTCGTACTCTTCCCACTCTATTCATT AATTATTTTCTGACCCCCCCCACGGCATTCGCGATTTAGATCCCCACATC GTTCTTCTGGGCTCTCTTCCGCGACAGGTAACTTTGCAGTTCACGGTGGG CAAGAGCGAGAACGACCCTTGCAGGGGCACCGGGATGCTGTCATTCCCGA ACTACGGCGGCCCCGACAAAGCGCTTCAGTACGTGGACCTGAGGCTGCTG GCCATGGCCGCGGAGGCCGAGGGTGTGGATCTGCGGCTGGTGTACCTGGC CAGGCCGGCGATGGACATCGTCGTCTCCACGACAAGACATCGCGACTTCG ACACAAGGTGAGCACGCGGAAGGATGGTGCCTATAGGTGCCGCGGGTTCC CGGGGCCTTTGCTTGCAGGGGGTACGAGGGAGCGGGAGGCATGCGGGAGG GGAGGGAGGGAGAAAGGAAGATACGACAGAGAGAAAGGAGAGGAAGGCCG AAAGCGAGAGATAACTCGGAGCGAATGAGAAGCGCGGTGCCGAGAGGTGC CAAAGGAAGGGGTCTCGCTGGCGGAAATGGAGATTGCACCCTTCGACCAA ATTTTATGAGCACTTTATCCCGGCCTTGTTTTTTTTTTTGAGTTAGTACA TAAGCCGGTCGCCCCGCGGTCAAGTTGGTATCCTCGAAACCTTCTGGTAA CGAGGTCACGGGTTCAATTCTCGGCGCCGTGGGATATTTTCTCACTTCGT AGCTGGTATAATAGTGGAAAGCGATAAAAGCTGAATAGCTCGTGAGTACA CAGAATTCGACTTCACTGTTGACGAGGGAAAGGGTCGGCTGGATATCTCT CGCGATGGAAAAAACACTCGGCACGCACCGCAGGAGGAAGGGGGGACAAC AAACCAAATACGGAGGAGGAAAAAGCCCCCTACTGTGTGACCCGGTTGAT TCTAGTTGTACAGAAAAAATACACTGAAAAAGTGTAGTACTCTAGATACA AAGCATGTGTAGCACATGTCTCACCTTGATCGGGGGGACTGTAGCAAAAG TAAATGGGATGAAAACATACACACAGTACACAGGGGCTCCGAAGGAGTTT GTGAAATGTAGACGACATAGTTCCCTGATATTTCTCATATGTATGCCCCC CCAAAAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCT AAGGCATGCAAAACATGAGAGTACGCCCCCCCCCCAAACAAAAAAAAAAT AAAGGAAATAGTATACCCCCCGCTCGGATCTTGGCTCGTCAAAGTCTTGA TCAGCGCATCCTCCATTCCTGCCCGCGAACCCCCTTGGCCCTGGGGTCCC GGGGCGCCGTAGGCGGTAAGGGGGGGGGACGGCAGGGTTGTGTGACAGAG GGTGAAAAAGAAAAAAATACTTGCCGAGTGAGGGGAAGGGAGGGGGAGAG AGGGAGGGATAGAGAATCGGGGGAGAAGAGAAATTTGGCACACTCGCTGA GGTGCTACGGCCGCAGCATCGACGTCGCACATGAAAGGCTTAAAGCCTTA TTTGAGACCGAACACTCCGAGAGCGGCACGGCTTCATTCTCTAGAGCACC GTCGTGAAATGGTTTTCCTGTGCATAGTACATTCGGCAGCGAAGGGCACA CCGCTGAATCACAACGTTTTTTCTTTTTGAAAAATGACAAACCAGTGTTT ATCTAGATTGGTTGACCTTTTTTCCAATTTCTTCATTTTCGCACGAACGC CGCCCGCCGAAATATGTTTCTTTCTTGCATTCCTTCACTGATGGGAAGAG GTACTGCTACCCTTTCCCCTCCCCTTGTTCGTAACCCACAACTGTCATTT TCCCCGCCTGCGGTGACTAGCGAGCGCCGAGAATGTGTCTTGAGAAGTTT CGCTGCAATCCCCTCTCGAGGCCTGCCCAGGGAACGCTGTCGTAGGCGAG AACTTCACTTTTTTCCGATCTCGCAGGCGGTCGACAGCAGGTGCTTGTCC CCTTGTTCTGACGACCGCCCAACAGATTTCTTCTTTTGGTGGAGTTGTTT GTGTCATTCATTAATTGCGACGTGCCAACCGGGGTAGCAACCCGCGCAGC AACACTGGCCGCCATAAATCGTAGAATCAAATGTGCGGAAGCTTATGGCG ATTCGTCTCGTCATCCCACCGACTAGACTATGAGGAGTTTCCCCGCTTCT TGTGTTCCGTTCTTTATTGCCGTGCCGTCGCTGCCTCCATCACTGCGGCC CTCTTCTTCAACTTCCAACGCAGGCCGGATTTGCCCTCGACGAAACCCGA GCAGCTTTTTTCCCGATACATGCAGGTAACGCTAACGCGTGTGTGATCGA TACTTGCCGGTAGTAGCAGCGGCTGTCTTCTCGAAACAAACAGGTACATT TAGCGACTCTTCCTCGATGCGTGCAGGTAGAACTACCAGCTCCTTTCACG ATGCATGCAGGTAAGGCTAGCTTCTTCCACCGCAACACCTGAACTCGAGT TGTGTCGAATTTGCGGGAATGTCTTGGCGATCTGTTCCCGTCTTGGTTGA GGTCGCCGTTGAAGGTCCCCCTCGCTTGAATGACCCTGTTAGACTTCATG CTCAATGAGCGAAACATTGTGTCTACACCCCCGCCGTGCCCGACTGAACC CTTGCATATCGCCGCTGTTGTTGTCGTTGTATGGTGTCCATGTCCGATGT CGCTCTCCATCGTAATTGTCGTCGTTGTTGTCCTTGTCATGTCCGTGTCC ATTCCGATACCGTTTTCGTCGTTGCCGCCGCCGCCGCCGTCGCCATAATT AGATTCTCCTCACGCAGGCGGCCCTCTTGGACTCCATGCTCGGGCAGCTG GGGCCCGTTTTCCTCATCTGCCATCACTACGACCGCATGTCGAGGCGGCG GCAGGTCCTGAGCGTGGCCGATTTCGTCGCCCCGACCCCGGAGGCCGCCG CGATGTTCGCGGAGTCCTTGTCCAGCACCGCCGCTCCGACTCCGAAGTGG TCGCTCAGGGGGGCAGACGAGAGGAGGGCGAAGTACGAGGGGGAGATGGT CGAAATCCGAAGGCTGCAGTTCCAGCTCGACGCCTTGGAGGCTGTTCACT GCAGCCCCGTCGACTGATCTGCGTACAGCTCGATGCCTTGGAGACTTCTC ACTACGGCCCTGTCGATTGAGCTTTGCGTGCATTAGGGAGGCCATTGCAT GGAGCACCAGGCCTGAAGTGACTGCTCGGAGGAGTCAACACGAGAGGGGC ATTAGCGCGAGGAAGAGGCGAAGGTCACCCGGTTGCAGTGCATAGATAAA GACTTCGAAGGTTCTCGATGTGGCCCGCCTCTGGACCCGACATCTCGTGC AGCACAATCGCAGTATAGTTTGCCAAGTACAGTGAGTGCCGAGATTCCGC GGTATACCCTGGATGGTGAGCTTGCCGATAAATTTACCGGCACCGAAGTC ATGTATGACCGCTGCGAGGTCCAGAGGACCCGTCCTTGGATTGAGCGGCA TCGCCTCGATTGTGGCACAATTTCTGCTTGCACTGCGTGCCGCGAACCTT CTCTTGTATGTGCGGCGGTCCCGGGTGGATCACCAACTCTTTCCCCCTGG ATAGCCCACTCTCTCTGTGGCATTCGCGGCTCTGGGTCGCCCACGGGCAA GCCTGGCCCACCGTGCAGATGGTTGCATGAGGGAGGGGGGAAAGGGGAGG GCTCATGCCTGCGAGCAAGCGAGCTACGAGATGGTGTTTTGTTCGCCCAC GCGAGCTGTTCATTACATTGTCTCTTGATTTTTTTCATCCCTGGGTTTCA AGATGGCGTGAGACAATGATTTTTCGGGAAAGAATAACGGGAACAGTTAG TGTGAGTGTCCCTGGTCGAGGGGCAAAATACGATAGGCGTCGTGAAGAAT GTACTACTCCGCAGTAAGTTTGGGCCACTTGTTTGAGATATTCATTGCTA TTGCTGATGCGAGACGGCGCTAAACGTTGCACGTATGGAAGAAAATGTTA CCAGGGAGGATTGATTGTGGGCCATTGGTTATCGTCGTTTACCAATGCGT GTGTTTTTACAAATTATCCAATAACGGATGAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:698872..705703-

>mRNA_P-fluviatile_contig12.1367.1 ID=mRNA_P-fluviatile_contig12.1367.1|Name=mRNA_P-fluviatile_contig12.1367.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1308bp|location=Sequence derived from alignment at P-fluviatile_contig12:698872..705703- (Porterinema fluviatile SAG_2381)
ATGCGGAGGCTGGCGGAGGCGGAACAATCTCTGCCGGAAGGGACCCCGGG
AACCATGATGCGGAGGCTGGCGGAGGCGGAACAATCTCTGCCGGAAGGGA
CCCCGGGAACCATGGTAACTTTGCAGTTCACGGTGGGCAAGAGCGAGAAC
GACCCTTGCAGGGGCACCGGGATGCTGTCATTCCCGAACTACGGCGGCCC
CGACAAAGCGCTTCAGTACGTGGACCTGAGGCTGCTGGCCATGGCCGCGG
AGGCCGAGGGTGTGGATCTGCGGCTGGTGTACCTGGCCAGGCCGGCGATG
GACATCGTCGTCTCCACGACAAGACATCGCGACTTCGACACAAGGTAACT
TTGCAGTTCACGGTGGGCAAGAGCGAGAACGACCCTTGCAGGGGCACCGG
GATGCTGTCATTCCCGAACTACGGCGGCCCCGACAAAGCGCTTCAGTACG
TGGACCTGAGGCTGCTGGCCATGGCCGCGGAGGCCGAGGGTGTGGATCTG
CGGCTGGTGTACCTGGCCAGGCCGGCGATGGACATCGTCGTCTCCACGAC
AAGACATCGCGACTTCGACACAAGGCCGGATTTGCCCTCGACGAAACCCG
AGCAGCTTTTTTCCCGATACATGCAGGCCGGATTTGCCCTCGACGAAACC
CGAGCAGCTTTTTTCCCGATACATGCAGATTCTCCTCACGCAGGCGGCCC
TCTTGGACTCCATGCTCGGGCAGCTGGGGCCCGTTTTCCTCATCTGCCAT
CACTACGACCGCATGTCGAGGCGGCGGCAGGTCCTGAGCGTGGCCGATTT
CGTCGCCCCGACCCCGGAGGCCGCCGCGATGTTCGCGGAGTCCTTGTCCA
GCACCGCCGCTCCGACTCCGAAGTGGTCGCTCAGGGGGGCAGACGAGAGG
AGGGCGAAGTACGAGGGGGAGATGGTCGAAATCCGAAGGCTGCAGTTCCA
GCTCGACGCCTTGGAGGCTGTTCACTGCAGCCCCGTCGACTGAATTCTCC
TCACGCAGGCGGCCCTCTTGGACTCCATGCTCGGGCAGCTGGGGCCCGTT
TTCCTCATCTGCCATCACTACGACCGCATGTCGAGGCGGCGGCAGGTCCT
GAGCGTGGCCGATTTCGTCGCCCCGACCCCGGAGGCCGCCGCGATGTTCG
CGGAGTCCTTGTCCAGCACCGCCGCTCCGACTCCGAAGTGGTCGCTCAGG
GGGGCAGACGAGAGGAGGGCGAAGTACGAGGGGGAGATGGTCGAAATCCG
AAGGCTGCAGTTCCAGCTCGACGCCTTGGAGGCTGTTCACTGCAGCCCCG
TCGACTGA
back to top